PLINK v1.90b3k 64-bit (9 Apr 2015) 6 arguments: --file 72chip_data --out 72chip_data --recode transpose Hostname: sparse Working directory: /data/scratch/caina/projects/CONVERGE/variants/array Start time: Tue Oct 6 16:12:22 2015 Random number seed: 1444144342 515993 MB RAM detected; reserving 257996 MB for main workspace. Scanning .ped file... done. Performing single-pass .bed write (855131 variants, 72 people). --file: 72chip_data-temporary.bed + 72chip_data-temporary.bim + 72chip_data-temporary.fam written. 855131 variants loaded from .bim file. 72 people (0 males, 0 females, 72 ambiguous) loaded from .fam. Ambiguous sex IDs written to 72chip_data.nosex . Using 1 thread (no multithreaded calculations invoked). Before main variant filters, 72 founders and 0 nonfounders present. Calculating allele frequencies... done. 855131 variants and 72 people pass filters and QC. Note: No phenotypes present. --recode transpose to 72chip_data.tped + 72chip_data.tfam ... done. End time: Tue Oct 6 16:12:55 2015