@----------------------------------------------------------@
|        PLINK!       |     v1.06      |   24/Apr/2009     |
|----------------------------------------------------------|
|  (C) 2009 Shaun Purcell, GNU General Public License, v2  |
|----------------------------------------------------------|
|  For documentation, citation & bug-report instructions:  |
|        http://pngu.mgh.harvard.edu/purcell/plink/        |
@----------------------------------------------------------@

Skipping web check... [ --noweb ] 
Writing this text to log file [ /Net/mus/data/HSrats/rats/genome_cache_oct/replication/sub.log ]
Analysis started: Thu Apr 26 10:31:06 2012

Options in effect:
	--noweb
	--ped /Net/mus/data/HSrats/rats/genome_cache_oct/ped_w_X.txt
	--map /Net/mus/data/HSrats/rats/genome_cache_oct/map_w_X.txt
	--no-fid
	--no-parents
	--no-sex
	--no-pheno
	--allow-no-sex
	--missing-genotype N
	--map3
	--compound-genotypes
	--extract /Net/mus/data/HSrats/rats/genome_cache_oct/replication/replicated_markers.txt
	--out /Net/mus/data/HSrats/rats/genome_cache_oct/replication/sub

265551 (of 265551) markers to be included from [ /Net/mus/data/HSrats/rats/genome_cache_oct/map_w_X.txt ]