% file for running simulations
block_size=2;%[100,200,400,500,1000];


filename1='locations_';
filename2='_block_length_';
filename3='_trial_';

for k=1:length(block_size)
    founders=2;
    no_locations=2;
    location_name=num2str(no_locations);
    block_name=num2str(block_size);
    for j=1:1
            [ location_vector,founder_matrix,founder_id,founder_selector] = hmm_input( founders,no_locations,block_size );
            %[ vpath,entropy ] = hmm_fun( no_founders,founder_matrix,location_vector )
            trial_name=num2str(j);
            new_filename = [filename1 location_name filename2 block_name filename3 trial_name ];
            %save(new_filename);
    end
end


