SpaMo - Spaced Motif Analysis

For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net.

Primary Motif | Sequence Database | Secondary Databases | Spacing Analysis | Program information

Primary Motif

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Name	Preview	Significant Secondaries	List
HGATAA (2.4e-254)	AGATAA	24	Ascl2 primary, M00698 (HEB), Tcfe2a secondary, M00176 (AP-4), M00277 (Lmo2), M01240 (BEN), M01288 (NeuroD), M00122 (USF), MA0267.1 (ACE2), Zic3 secondary, MA0210.1 (ara), MA0092.1 (Hand1::Tcfe2a), M00378 (Pax-4), M00414 (AREB6), M00072 (CP2), M00391 (UAY), M00344 (RAV1), Myf6 secondary, M00915 (AP-2), MA0103.1 (ZEB1)

Sequence Database

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Name	Last Modified	Loaded	Too Short	No Primary	Too Similar	Used
sequences	Fri Apr 8 21:53:27 2011	2400	0	948	121	1331

Secondary Databases

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Name	Last Modified	Number of Motifs	Motifs Significant	Motifs Redundant
JASPAR CORE 2009	Tue Mar 29 11:25:11 2011	476	5	3
transfac matrix	Tue Mar 29 11:25:11 2011	1226	15	21
uniprobe mouse	Tue Mar 29 11:25:11 2011	386	4	4

Spacings of "Ascl2 primary" relative to "HGATAA (2.4e-254)"

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Primary: HGATAA (2.4e-254)	Secondary: Ascl2 primary
AGATAA	CTCAGCAGCTGCTCCTG

Motif Spacing Histogram

Significant Motif Spacings

Upstream

Downstream

Upstream

Downstream

Other Details

Same Strand

Opposite Strand

P-value	Gap	#
2.3e-07	7	17

P-value	Gap	#
2.8e-15	5	24
0.0023	4	13
0.019	6	12

Total sequences with primary and secondary motif

893

Motif Database

uniprobe mouse

Similar Secondary: M00804 (E2A)

Same Strand

Opposite Strand

P-value	Gap	#
0.0012	2	13

P-value	Gap	#
1.3e-14	8	23
0.011	7	12

Total sequences with primary and secondary motif

833

Alignment by most significant spacings

Best Similar Secondary	CTCAGCAGCTGCTCCTG
This Similar Secondary	CCACCTGTCTCAGG

Similar Secondary: M00712 (myogenin)

Same Strand

Opposite Strand

P-value	Gap	#
9.5e-14	8	21
0.0016	7	12

P-value	Gap	#
0.0016	6	12

Total sequences with primary and secondary motif

720

Alignment by most significant spacings

Best Similar Secondary	CAGGAGCAGCTGCTGAG
This Similar Secondary	GGCAGGTG

Similar Secondary: M00184 (MyoD)

Same Strand

Opposite Strand

P-value	Gap	#
0.0011	6	13

P-value	Gap	#
1.8e-13	8	22
1.1e-05	7	15

Total sequences with primary and secondary motif

851

Alignment by most significant spacings

Best Similar Secondary	CTCAGCAGCTGCTCCTG
This Similar Secondary	AGCACCTGTC

Similar Secondary: Myf6 primary

Same Strand

Opposite Strand

P-value	Gap	#
1.4e-12	6	21
0.0068	5	12

P-value	Gap	#
7e-06	6	15

Total sequences with primary and secondary motif

811

Alignment by most significant spacings

Best Similar Secondary	CAGGAGCAGCTGCTGAG
This Similar Secondary	GAAGAACAGGTGTCCG

Similar Secondary: Tcfe2a primary

Same Strand

Opposite Strand

P-value	Gap	#
4.3e-11	7	18
3.1e-05	6	13
0.0042	8	11

P-value	Gap	#
0.042	7	10

Total sequences with primary and secondary motif

631

Alignment by most significant spacings

Best Similar Secondary	CAGGAGCAGCTGCTGAG
This Similar Secondary	ATCCACAGGTGCGAAAA

Similar Secondary: M00001 (MyoD)

Same Strand

Opposite Strand

P-value	Gap	#
5.1e-11	5	17

Total sequences with primary and secondary motif

521

Alignment by most significant spacings

Best Similar Secondary	CAGGAGCAGCTGCTGAG
This Similar Secondary	GAACAGGTGTTG

Similar Secondary: M00929 (MyoD)

Same Strand

Opposite Strand

P-value	Gap	#
5.1e-10	5	20
7.6e-06	4	16

P-value	Gap	#
7.5e-07	4	17

Total sequences with primary and secondary motif

943

Alignment by most significant spacings

Best Similar Secondary	CAGGAGCAGCTGCTGAG
This Similar Secondary	CCGAAGCAGGTGGCGAAG

Similar Secondary: M00973 (E2A)

Same Strand

Opposite Strand

P-value	Gap	#
2.8e-06	6	16
0.00028	5	14

P-value	Gap	#
1.9e-09	8	19
2.8e-06	7	16
0.021	9	12

Total sequences with primary and secondary motif

913

Alignment by most significant spacings

Best Similar Secondary	CTCAGCAGCTGCTCCTG
This Similar Secondary	CACCTGTC

Similar Secondary: M00644 (LBP-1)

Same Strand

Opposite Strand

P-value	Gap	#
2.7e-08	7	16

P-value	Gap	#
5e-06	8	14

Total sequences with primary and secondary motif

672

Alignment by most significant spacings

Best Similar Secondary	CAGGAGCAGCTGCTGAG
This Similar Secondary	CAGCTGC

Similar Secondary: M00693 (E12)

Same Strand

Opposite Strand

P-value	Gap	#
2.5e-07	5	15
0.00051	4	12

P-value	Gap	#
4.3e-05	6	13

Total sequences with primary and secondary motif

635

Alignment by most significant spacings

Best Similar Secondary	CAGGAGCAGCTGCTGAG
This Similar Secondary	GGCAGGTGCCG

Similar Secondary: M00002 (E47)

Same Strand

Opposite Strand

P-value	Gap	#
1.4e-06	5	13

Total sequences with primary and secondary motif

472

Alignment by most significant spacings

Best Similar Secondary	CAGGAGCAGCTGCTGAG
This Similar Secondary	ACGGCAGGTGTCCGC

Similar Secondary: M00071 (E47)

Same Strand

Opposite Strand

P-value	Gap	#
1.9e-06	5	13

P-value	Gap	#
0.0053	6	10

Total sequences with primary and secondary motif

492

Alignment by most significant spacings

Best Similar Secondary	CAGGAGCAGCTGCTGAG
This Similar Secondary	AATAACAGGTGTTCAC

Similar Secondary: M00066 (Tal-1alpha:E47)

Same Strand

Opposite Strand

P-value	Gap	#
0.00027	6	11
0.0036	5	10

P-value	Gap	#
0.043	6	9

Total sequences with primary and secondary motif

476

Alignment by most significant spacings

Best Similar Secondary	CAGGAGCAGCTGCTGAG
This Similar Secondary	TCGAACAGATGGTGAC

Similar Secondary: M00065 (Tal-1beta:E47)

Same Strand

Opposite Strand

P-value	Gap	#
0.021	6	9

P-value	Gap	#
0.021	6	9

Total sequences with primary and secondary motif

435

Alignment by most significant spacings

Best Similar Secondary	CAGGAGCAGCTGCTGAG
This Similar Secondary	CTGAACAGATGGTCGG

Spacings of "M00698 (HEB)" relative to "HGATAA (2.4e-254)"

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Primary: HGATAA (2.4e-254)	Secondary: M00698 (HEB)
AGATAA	GCCAGCTG

Motif Spacing Histogram

Significant Motif Spacings

Upstream

Downstream

Upstream

Downstream

Other Details

Same Strand

Opposite Strand

P-value	Gap	#
4.4e-11	8	19
0.02	7	11

P-value	Gap	#
9.4e-09	6	17

Total sequences with primary and secondary motif

740

Motif Database

transfac matrix

Secondary motifs with similar spacings

MA0048.1 (NHLH1)M00993 (TAL1)M00927 (AP-4)

Similar Secondary: MA0048.1 (NHLH1)

Same Strand

Opposite Strand

P-value	Gap	#
9.7e-10	6	16

Total sequences with primary and secondary motif

529

Alignment by most significant spacings

Best Similar Secondary	GCCAGCTG
This Similar Secondary	GCGCAGCTGCGT

Similar Secondary: M00993 (TAL1)

Same Strand

Opposite Strand

P-value	Gap	#
1.8e-08	6	16

P-value	Gap	#
1.8e-08	6	16

Total sequences with primary and secondary motif

640

Alignment by most significant spacings

Best Similar Secondary	GCCAGCTG
This Similar Secondary	TCCATCTGCT

Similar Secondary: M00927 (AP-4)

Same Strand

Opposite Strand

P-value	Gap	#
3.6e-08	7	19

P-value	Gap	#
3.6e-06	6	17

Total sequences with primary and secondary motif

1073

Alignment by most significant spacings

Best Similar Secondary	GCCAGCTG
This Similar Secondary	ACCAGCTGC

Spacings of "Tcfe2a secondary" relative to "HGATAA (2.4e-254)"

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Primary: HGATAA (2.4e-254)	Secondary: Tcfe2a secondary
AGATAA	AAGGCCAGATGGTCCGG

Motif Spacing Histogram

Significant Motif Spacings

Upstream

Downstream

Upstream

Downstream

Other Details

Same Strand

Opposite Strand

P-value	Gap	#
2.2e-06	6	15

P-value	Gap	#
6.8e-11	8	19

Total sequences with primary and secondary motif

758

Motif Database

uniprobe mouse

Secondary motifs with similar spacings

MA0091.1 (TAL1::TCF3)M00068 (HEN1)

Similar Secondary: MA0091.1 (TAL1::TCF3)

Same Strand

Opposite Strand

P-value	Gap	#
2.7e-06	6	12

Total sequences with primary and secondary motif

402

Alignment by most significant spacings

Best Similar Secondary	CCGGACCATCTGGCCTT
This Similar Secondary	CGACCATCTGTT

Similar Secondary: M00068 (HEN1)

Same Strand

Opposite Strand

P-value	Gap	#
0.007	2	8

Total sequences with primary and secondary motif

258

Alignment by most significant spacings

Best Similar Secondary	CCGGACCATCTGGCCTT
This Similar Secondary	ATGGGGCGCAGCTGCGCCCCTC

Spacings of "M00176 (AP-4)" relative to "HGATAA (2.4e-254)"

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Primary: HGATAA (2.4e-254)	Secondary: M00176 (AP-4)
AGATAA	CACAGCTGGT

Motif Spacing Histogram

Significant Motif Spacings

Upstream

Downstream

Upstream

Downstream

Other Details

Same Strand

Opposite Strand

P-value	Gap	#
6.5e-09	7	17

Total sequences with primary and secondary motif

718

Motif Database

transfac matrix

Secondary motifs with similar spacings

M01287 (Neuro)M00175 (AP-4)

Similar Secondary: M01287 (Neuro)

Same Strand

Opposite Strand

P-value	Gap	#
3e-08	8	18

P-value	Gap	#
3.4e-07	8	17

Total sequences with primary and secondary motif

941

Alignment by most significant spacings

Best Similar Secondary	CACAGCTGGT
This Similar Secondary	CAGCTG

Similar Secondary: M00175 (AP-4)

Same Strand

Opposite Strand

P-value	Gap	#
2.9e-07	8	17

Total sequences with primary and secondary motif

919

Alignment by most significant spacings

Best Similar Secondary	CACAGCTGGT
This Similar Secondary	CTCAGCTGGT

Spacings of "M00277 (Lmo2)" relative to "HGATAA (2.4e-254)"

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Primary: HGATAA (2.4e-254)	Secondary: M00277 (Lmo2)
AGATAA	CGCCAGGTGCAG

Motif Spacing Histogram

Significant Motif Spacings

Upstream

Downstream

Upstream

Downstream

Other Details

Same Strand

Opposite Strand

P-value	Gap	#
2.1e-08	7	18
0.00026	6	14

P-value	Gap	#
2.1e-08	5	18
0.00026	4	14

Total sequences with primary and secondary motif

896

Motif Database

transfac matrix

Secondary motifs with similar spacings

M01034 (Ebox)

Similar Secondary: M01034 (Ebox)

Same Strand

Opposite Strand

P-value	Gap	#
0.00016	6	15

P-value	Gap	#
1.8e-07	8	18

Total sequences with primary and secondary motif

1034

Alignment by most significant spacings

Best Similar Secondary	CTGCACCTGGCG
This Similar Secondary	CCACGTGACC

Spacings of "M01240 (BEN)" relative to "HGATAA (2.4e-254)"

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Primary: HGATAA (2.4e-254)	Secondary: M01240 (BEN)
AGATAA	CAGCGACC

Motif Spacing Histogram

Significant Motif Spacings

Upstream

Downstream

Upstream

Downstream

Other Details

Same Strand

Opposite Strand

P-value	Gap	#
2.6e-07	8	17

Total sequences with primary and secondary motif

912

Motif Database

transfac matrix

Spacings of "M01288 (NeuroD)" relative to "HGATAA (2.4e-254)"

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Primary: HGATAA (2.4e-254)	Secondary: M01288 (NeuroD)
AGATAA	CTGCTGCTGTGC

Motif Spacing Histogram

Significant Motif Spacings

Upstream

Downstream

Upstream

Downstream

Other Details

Same Strand

Opposite Strand

P-value	Gap	#
7.3e-07	5	18

P-value	Gap	#
6.8e-06	5	17
0.0039	4	14

Total sequences with primary and secondary motif

1096

Motif Database

transfac matrix

Spacings of "M00122 (USF)" relative to "HGATAA (2.4e-254)"

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Primary: HGATAA (2.4e-254)	Secondary: M00122 (USF)
AGATAA	AAATCACGTGATAT

Motif Spacing Histogram

Significant Motif Spacings

Upstream

Downstream

Upstream

Downstream

Other Details

Same Strand

Opposite Strand

P-value	Gap	#
2.6e-06	6	14

Total sequences with primary and secondary motif

626

Motif Database

transfac matrix

Secondary motifs with similar spacings

M00796 (USF)

Similar Secondary: M00796 (USF)

Same Strand

Opposite Strand

P-value	Gap	#
0.013	6	11

Total sequences with primary and secondary motif

699

Alignment by most significant spacings

Best Similar Secondary	ATATCACGTGATTT
This Similar Secondary	GACCACGTGACA

Spacings of "MA0267.1 (ACE2)" relative to "HGATAA (2.4e-254)"

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Primary: HGATAA (2.4e-254)	Secondary: MA0267.1 (ACE2)
AGATAA	ACCAGCA

Motif Spacing Histogram

Significant Motif Spacings

Upstream

Downstream

Upstream

Downstream

Other Details

Same Strand

Opposite Strand

P-value	Gap	#
3.2e-05	6	16

Total sequences with primary and secondary motif

1093

Motif Database

JASPAR CORE 2009

Secondary motifs with similar spacings

MA0402.1 (SWI5)

Similar Secondary: MA0402.1 (SWI5)

Same Strand

Opposite Strand

P-value	Gap	#
0.0018	6	13

Total sequences with primary and secondary motif

895

Alignment by most significant spacings

Best Similar Secondary	TGCTGGT
This Similar Secondary	TGCTGGTT

Spacings of "Zic3 secondary" relative to "HGATAA (2.4e-254)"

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Primary: HGATAA (2.4e-254)	Secondary: Zic3 secondary
AGATAA	GAGCACAGCAGGACA

Motif Spacing Histogram

Significant Motif Spacings

Upstream

Downstream

Upstream

Downstream

Other Details

Same Strand

Opposite Strand

P-value	Gap	#
4.3e-05	5	14

Total sequences with primary and secondary motif

777

Motif Database

uniprobe mouse

Secondary motifs with similar spacings

Zic2 secondaryZic1 secondary

Similar Secondary: Zic2 secondary

Same Strand

Opposite Strand

P-value	Gap	#
6.4e-05	5	14

Total sequences with primary and secondary motif

802

Alignment by most significant spacings

Best Similar Secondary	GAGCACAGCAGGACA
This Similar Secondary	CCACACAGCAGGAGA

Similar Secondary: Zic1 secondary

Same Strand

Opposite Strand

P-value	Gap	#
7e-05	5	14

Total sequences with primary and secondary motif

807

Alignment by most significant spacings

Best Similar Secondary	GAGCACAGCAGGACA
This Similar Secondary	CCACACAGCAGGAGA

Spacings of "MA0210.1 (ara)" relative to "HGATAA (2.4e-254)"

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Primary: HGATAA (2.4e-254)	Secondary: MA0210.1 (ara)
AGATAA	TAACA

Motif Spacing Histogram

Significant Motif Spacings

Upstream

Downstream

Upstream

Downstream

Other Details

Same Strand

Opposite Strand

P-value	Gap	#
0.00012	5	15

Total sequences with primary and secondary motif

1033

Motif Database

JASPAR CORE 2009

Spacings of "MA0092.1 (Hand1::Tcfe2a)" relative to "HGATAA (2.4e-254)"

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Primary: HGATAA (2.4e-254)	Secondary: MA0092.1 (Hand1::Tcfe2a)
AGATAA	GGTCTGGCAT

Motif Spacing Histogram

Significant Motif Spacings

Upstream

Downstream

Upstream

Downstream

Other Details

Same Strand

Opposite Strand

P-value	Gap	#
0.00036	4	14

Total sequences with primary and secondary motif

924

Motif Database

JASPAR CORE 2009

Spacings of "M00378 (Pax-4)" relative to "HGATAA (2.4e-254)"

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Primary: HGATAA (2.4e-254)	Secondary: M00378 (Pax-4)
AGATAA	AATCCCCACCCG

Motif Spacing Histogram

Significant Motif Spacings

Upstream

Downstream

Upstream

Downstream

Other Details

Same Strand

Opposite Strand

P-value	Gap	#
0.00068	7	15

Total sequences with primary and secondary motif

1163

Motif Database

transfac matrix

Spacings of "M00414 (AREB6)" relative to "HGATAA (2.4e-254)"

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Primary: HGATAA (2.4e-254)	Secondary: M00414 (AREB6)
AGATAA	CTGCACCTGTGC

Motif Spacing Histogram

Significant Motif Spacings

Upstream

Downstream

Upstream

Downstream

Other Details

Same Strand

Opposite Strand

P-value	Gap	#
0.0013	6	9

Total sequences with primary and secondary motif

311

Motif Database

transfac matrix

Spacings of "M00072 (CP2)" relative to "HGATAA (2.4e-254)"

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Primary: HGATAA (2.4e-254)	Secondary: M00072 (CP2)
AGATAA	GCACAACCCAG

Motif Spacing Histogram

Significant Motif Spacings

Upstream

Downstream

Upstream

Downstream

Other Details

Same Strand

Opposite Strand

P-value	Gap	#
0.0017	0	10

Total sequences with primary and secondary motif

435

Motif Database

transfac matrix

Spacings of "M00391 (UAY)" relative to "HGATAA (2.4e-254)"

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Primary: HGATAA (2.4e-254)	Secondary: M00391 (UAY)
AGATAA	ATCGCAGGAGGCCGAC

Motif Spacing Histogram

Significant Motif Spacings

Upstream

Downstream

Upstream

Downstream

Other Details

Same Strand

Opposite Strand

P-value	Gap	#
0.0023	19	5

Total sequences with primary and secondary motif

Motif Database

transfac matrix

Spacings of "M00344 (RAV1)" relative to "HGATAA (2.4e-254)"

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Primary: HGATAA (2.4e-254)	Secondary: M00344 (RAV1)
AGATAA	ATCACCTGAGGC

Motif Spacing Histogram

Significant Motif Spacings

Upstream

Downstream

Upstream

Downstream

Other Details

Same Strand

Opposite Strand

P-value	Gap	#
0.0028	7	14

Total sequences with primary and secondary motif

1107

Motif Database

transfac matrix

Spacings of "Myf6 secondary" relative to "HGATAA (2.4e-254)"

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Primary: HGATAA (2.4e-254)	Secondary: Myf6 secondary
AGATAA	AGCAACAGCCGCACC

Motif Spacing Histogram

Significant Motif Spacings

Upstream

Downstream

Upstream

Downstream

Other Details

Same Strand

Opposite Strand

P-value	Gap	#
0.0036	6	14

Total sequences with primary and secondary motif

1090

Motif Database

uniprobe mouse

Spacings of "M00915 (AP-2)" relative to "HGATAA (2.4e-254)"

Previous Next Top

Primary: HGATAA (2.4e-254)	Secondary: M00915 (AP-2)
AGATAA	CGGCCCCCAGGCC

Motif Spacing Histogram

Significant Motif Spacings

Upstream

Downstream

Upstream

Downstream

Other Details

Same Strand

Opposite Strand

P-value	Gap	#
0.005	1	13

Total sequences with primary and secondary motif

943

Motif Database

transfac matrix

Spacings of "MA0103.1 (ZEB1)" relative to "HGATAA (2.4e-254)"

Previous Next Top

Primary: HGATAA (2.4e-254)	Secondary: MA0103.1 (ZEB1)
AGATAA	CACCTG

Motif Spacing Histogram

Significant Motif Spacings

Upstream

Downstream

Upstream

Downstream

Other Details

Same Strand

Opposite Strand

P-value	Gap	#
0.0051	7	11

Total sequences with primary and secondary motif

652

Motif Database

JASPAR CORE 2009

Secondary motifs with similar spacings

M00073 (deltaEF1)

Similar Secondary: M00073 (deltaEF1)

Same Strand

Opposite Strand

P-value	Gap	#
0.02	7	11

Total sequences with primary and secondary motif

745

Alignment by most significant spacings

Best Similar Secondary	CACCTG
This Similar Secondary	ACTCACCTGAA

Spacings of "M01090 (MAD)" relative to "HGATAA (2.4e-254)"

Previous Next Top

Primary: HGATAA (2.4e-254)	Secondary: M01090 (MAD)
AGATAA	GCGACGAC

Motif Spacing Histogram

Significant Motif Spacings

Upstream

Downstream

Upstream

Downstream

Other Details

Same Strand

Opposite Strand

P-value	Gap	#
0.0051	4	12

Total sequences with primary and secondary motif

806

Motif Database

transfac matrix

Spacings of "M00044 (Sn)" relative to "HGATAA (2.4e-254)"

Previous Next Top

Primary: HGATAA (2.4e-254)	Secondary: M00044 (Sn)
AGATAA	ACCACCTGTTTACA

Motif Spacing Histogram

Significant Motif Spacings

Upstream

Downstream

Upstream

Downstream

Other Details

Same Strand

Opposite Strand

P-value	Gap	#
0.015	2	11

Total sequences with primary and secondary motif

688

Motif Database

transfac matrix

Spacings of "M01139 (LMAF)" relative to "HGATAA (2.4e-254)"

Previous Next Top

Primary: HGATAA (2.4e-254)	Secondary: M01139 (LMAF)
AGATAA	GGTCAGCAG

Motif Spacing Histogram

Significant Motif Spacings

Upstream

Downstream

Upstream

Downstream

Other Details

Same Strand

Opposite Strand

P-value	Gap	#
0.019	2	10

Total sequences with primary and secondary motif

575

Motif Database

transfac matrix

Spacings of "MA0055.1 (Myf)" relative to "HGATAA (2.4e-254)"

Previous Next Top

Primary: HGATAA (2.4e-254)	Secondary: MA0055.1 (Myf)
AGATAA	CAGCAGCTGCTG

Motif Spacing Histogram

Significant Motif Spacings

Upstream

Downstream

Upstream

Downstream

Other Details

Same Strand

Opposite Strand

P-value	Gap	#
0.03	5	9

Total sequences with primary and secondary motif

449

Motif Database

JASPAR CORE 2009

Secondary motifs with similar spacings

M01302 (MYF)

Similar Secondary: M01302 (MYF)

Same Strand

Opposite Strand

P-value	Gap	#
0.03	5	9

Total sequences with primary and secondary motif

449

Alignment by most significant spacings

Best Similar Secondary	CAGCAGCTGCTG
This Similar Secondary	CAGCAGCTGCTG

Previous Top

SpaMo version

4.6.1 (Release date: Mon Mar 21 13:41:45 EST 2011)

Reference

"Inferring transcription factor complexes from ChIP-seq data", Tom Whitington, Martin C. Frith, James Johnson, and Timothy L. Bailey, submitted for publication.

Command line summary

spamo  -v 1 -oc . -png -numgen 1 -margin 150 sequences dreme.txt db/JASPAR_CORE_2009.meme db/transfac_matrix.meme db/uniprobe_mouse.meme

Result calculation took 3 minutes 53 seconds
Note that the random number generator was initilized with a seed of 1 so you need "-numgen 1" in the list of arguments to replicate the experiment.

show model parameters...

Model parameters

seed                  = 1
margin                = 150
bin_size              = 1
bin_pvalue_calc_range = 20
bin_pvalue_cutoff     = 0.05
seq_max_shared_fract  = 0.5
seq_min_hit_score     = 7
redundant_overlap     = 2
redundant_joint       = 0.5
motif_pseudocount     = 0.1
motif_trim            = 0.25
bin_max               = 24
host                  = compute-0-9.local
when                  = Fri Apr 8 21:53:38 2011