fasta-io

Usage: fasta-io [options] <sequences>

Description:

This utility reads a sequence file in FASTA format and writes it to standard out.

Input:

• <sequences> - a file containing a set of sequences in FASTA format.

Output:

The program prints to standard output.

Options:

• --blocksize <n> - Read sequences in blocks of size n. Default behavior is to read one full sequence at a time.
• -dna - Sets alphabet to DNA (default protein).
• -many - Read all sequences into memory at start up.
• --verbosity 1|2|3|4 - Set the verbosity of status reports to standard error. The default level is 2.

Bugs: None known.