fitevd

Usage: fitevd <q> [options]

Description:

fitevd fits an extreme value distribution to a set of score-length paris with a query length of <q>.

Input:

• Reads white-space separated score-length pairs from stdin

Output:

• Writes the EVD parameters to stdout.

Options:

• -d <smin> <smax> - Print length vs p-value for <smin> <= score <= <smax>.
• -h <H> - Initial value of H. Default value: 1.0.
• -ilh <ilh> - Maximum iterations in outer L-H loop. Default value: 10.
• -inr <inr> - Maximum iterations in inner N-R loop. Default value: 20.
• -lr <lr> - Minimum ration of shortest to longest in group. Default value: 1.50.
• -p <n> - Print p-values. Default value: off.
• -r <n> - use <n> randomly selected scores. Default value: all.
• -s <s> - Size of length groups. Default value: 10000.
• -t - Turn on debug tracing. Default value: off.

Bugs: None known.

Author: Tim Bailey