getsize

Usage: getsize <datafile> [options]

Description:

getsize prints statistics about the sequences in <datafile>.

Input:

• A file in FASTA format. If the filename is given as "-", then the program reads from standard input.

Output:

• Writes statistics about the sequences to stdout.

Options:

• -codons - Print frame 0 codon usage.
• -dna - Print DNA frequencies in background file format.
• -f - Print letter frequences.
• -ft - Print letter frequences in a LaTex table.
• -l - Just print the length of each sequence.
• -f - Do not print warnings about duplicate sequences.
• -prot - Print protein frequencies in background file format.
• -x - Translate DNA in 6 frames.

Bugs: None known.

Author: Tim Bailey