meme2meme

Usage: meme2meme [options] [<meme file>]+

Description:

Convert and merge multiple MEME formatted files into a single minimal meme format file.

Input:

Multiple meme files. The new meme html format is supported but the old html format is not.

Options:

-consensus

numeric names are swapped for an IUPAC consensus; default: use existing names

-numbers

use numbers instead of strings for motif names; default: use existing ID

-bg <background file>

file with background frequencies of letters; default: use first file background

-logodds

print log-odds matrix as well as frequency matrix; default: frequency matrix only

-url <website>

website for the motif if it doesn't have one already; The motif name is substituted for MOTIF_NAME; default: use existing url

-forceurl

Existing urls are ignored

Output:

Writes MEME format to standard output.