# Makefile.in generated by automake 1.11.1 from Makefile.am.
# src/parallel/Makefile.  Generated from Makefile.in by configure.

# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
# 2003, 2004, 2005, 2006, 2007, 2008, 2009  Free Software Foundation,
# Inc.
# This Makefile.in is free software; the Free Software Foundation
# gives unlimited permission to copy and/or distribute it,
# with or without modifications, as long as this notice is preserved.

# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
# PARTICULAR PURPOSE.



#
# To MAKE in DEBUG mode (it will write out lots of status info):
#	make CFLAGS=" -DDEBUG_PARALLEL"

# redefine make macros 
#CC = $(MPICC)
# TLB: FIXME This command makes things at least compile with the -DPARALLEL switch,
# but there are two -O switches
#CFLAGS=
#INCLUDES = -I.. $(MPIINC)
#COMPILE = $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES)
#LINK = $(CCLD) $(AM_CFLAGS) $(AM_LDFLAGS) $(LDFLAGS) -o $@
#LINK = $(LIBTOOL) --mode=link --tag=CC $(CCLD) $(AM_CFLAGS) $(CFLAGS) \
#	$(AM_LDFLAGS) $(LDFLAGS) -o $@ 


pkgdatadir = $(datadir)/meme
pkgincludedir = $(includedir)/meme
pkglibdir = $(libdir)/meme
pkglibexecdir = $(libexecdir)/meme
am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
install_sh_DATA = $(install_sh) -c -m 644
install_sh_PROGRAM = $(install_sh) -c
install_sh_SCRIPT = $(install_sh) -c
INSTALL_HEADER = $(INSTALL_DATA)
transform = $(program_transform_name)
NORMAL_INSTALL = :
PRE_INSTALL = :
POST_INSTALL = :
NORMAL_UNINSTALL = :
PRE_UNINSTALL = :
POST_UNINSTALL = :
build_triplet = x86_64-unknown-linux-gnu
host_triplet = x86_64-unknown-linux-gnu
bin_PROGRAMS = meme_p$(EXEEXT)
subdir = src/parallel
DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
am__aclocal_m4_deps = $(top_srcdir)/configure.ac
am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
	$(ACLOCAL_M4)
mkinstalldirs = $(SHELL) $(top_srcdir)/config/mkinstalldirs
CONFIG_HEADER = $(top_builddir)/config.h
CONFIG_CLEAN_FILES =
CONFIG_CLEAN_VPATH_FILES =
am__installdirs = "$(DESTDIR)$(bindir)"
PROGRAMS = $(bin_PROGRAMS)
am_meme_p_OBJECTS = meme_p-banner.$(OBJEXT) \
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	meme_p-display.$(OBJEXT) meme_p-dpalign.$(OBJEXT) \
	meme_p-em.$(OBJEXT) meme_p-init.$(OBJEXT) \
	meme_p-justlike.$(OBJEXT) meme_p-likelihood.$(OBJEXT) \
	meme_p-llr.$(OBJEXT) meme_p-logs.$(OBJEXT) \
	meme_p-meme.$(OBJEXT) meme_p-meme-print-html.$(OBJEXT) \
	meme_p-meme_util.$(OBJEXT) meme_p-message.$(OBJEXT) \
	meme_p-mp.$(OBJEXT) meme_p-oops.$(OBJEXT) \
	meme_p-partition.$(OBJEXT) meme_p-prior.$(OBJEXT) \
	meme_p-psp.$(OBJEXT) meme_p-pssm-distr.$(OBJEXT) \
	meme_p-read_seq_file.$(OBJEXT) meme_p-regress.$(OBJEXT) \
	meme_p-seed.$(OBJEXT) meme_p-seed_diffs.$(OBJEXT) \
	meme_p-seq2theta.$(OBJEXT) meme_p-sp_matrix.$(OBJEXT) \
	meme_p-starts.$(OBJEXT) meme_p-subseq7.$(OBJEXT) \
	meme_p-tcm.$(OBJEXT) meme_p-verbosity.$(OBJEXT)
meme_p_OBJECTS = $(am_meme_p_OBJECTS)
am__DEPENDENCIES_1 =
meme_p_DEPENDENCIES = ../libcommon.la $(am__DEPENDENCIES_1) \
	$(am__DEPENDENCIES_1)
meme_p_LINK = $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) \
	--mode=link $(CCLD) $(meme_p_CFLAGS) $(CFLAGS) $(AM_LDFLAGS) \
	$(LDFLAGS) -o $@
DEFAULT_INCLUDES = -I. -I$(top_builddir)
depcomp = $(SHELL) $(top_srcdir)/config/depcomp
am__depfiles_maybe = depfiles
am__mv = mv -f
COMPILE = $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) \
	$(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS)
LTCOMPILE = $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) \
	--mode=compile $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) \
	$(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS)
CCLD = $(CC)
LINK = $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) \
	--mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) $(AM_LDFLAGS) \
	$(LDFLAGS) -o $@
SOURCES = $(meme_p_SOURCES)
DIST_SOURCES = $(meme_p_SOURCES)
ETAGS = etags
CTAGS = ctags
DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
ACLOCAL = ${SHELL} /data/MEME/meme_4.7.0/config/missing --run aclocal-1.11
AMTAR = ${SHELL} /data/MEME/meme_4.7.0/config/missing --run tar
ANT = /usr/bin/ant
AR = ar
AUTOCONF = ${SHELL} /data/MEME/meme_4.7.0/config/missing --run autoconf
AUTOHEADER = ${SHELL} /data/MEME/meme_4.7.0/config/missing --run autoheader
AUTOMAKE = ${SHELL} /data/MEME/meme_4.7.0/config/missing --run automake-1.11
AWK = gawk
BLOCKS_URL = http://blocks.fhcrc.org/blocks-bin/process_blocks.pl
CC = $(MPICC)
CCDEPMODE = depmode=gcc3
CFLAGS = -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__   -O3
CONTACT = @mus
CONVERT = /usr/bin/convert
CPP = gcc -E
CPPFLAGS = 
CYGPATH_W = echo
DEBUG_FLAGS = 
DEFS = -DHAVE_CONFIG_H
DEPDIR = .deps
DOT = /usr/bin/dot
DSYMUTIL = 
DUMPBIN = 
ECHO_C = 
ECHO_N = -n
ECHO_T = 
EGREP = /bin/grep -E
EXEEXT = 
FGREP = /bin/grep -F
GHOSTSCRIPT = /usr/bin/gs
GOSERVER_URL = http://amigo.geneontology.org/cgi-bin/amigo/
GREP = /bin/grep
HAVE_ELINKS = no
HOSTNAME = mus
INSTALL = /usr/bin/install -c
INSTALL_DATA = ${INSTALL} -m 644
INSTALL_PROGRAM = ${INSTALL}
INSTALL_SCRIPT = ${INSTALL}
INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
LAMBIN = 
LD = /usr/bin/ld -m elf_x86_64
LDFLAGS = 
LIBEXSLT_CFLAGS = -I${top_srcdir}/src/libexslt
LIBEXSLT_LIBS = ${top_builddir}/src/libexslt/libexslt.la
LIBOBJS = 
LIBS = -lmpi -lm 
LIBTOOL = $(SHELL) $(top_builddir)/libtool
LIBXML2_CFLAGS = -I${top_srcdir}/src/libxml2/include
LIBXML2_LIBS = ${top_builddir}/src/libxml2/libxml2.la
LIBXSLT_CFLAGS = -I${top_srcdir}/src/
LIBXSLT_LIBS = ${top_builddir}/src/libxslt/libxslt.la
LIPO = 
LN_S = ln -s
LTLIBOBJS = 
MACHID = linux
MAIL = /usr/bin/mail
MAKEINFO = ${SHELL} /data/MEME/meme_4.7.0/config/missing --run makeinfo
MAST_PORT = 
MAXTIME = 7200
MEME_DB = ${prefix}/db
MEME_DIRECTORY = ${prefix}
MEME_LOGS = ${prefix}/LOGS
MEME_PORT = 
MEME_TEMP = 
MKDIR_P = /bin/mkdir -p
MPICC = /usr/bin/mpicc
MPIFLAGS = -DPARALLEL 
MPIINC = -DMPI -I/usr/include
MPILIBDIR = /usr/lib
MPITYPE = mpich
MPI_CMD = /usr/bin/mpirun -np
NM = /usr/bin/nm -B
NMEDIT = 
OBJDUMP = objdump
OBJEXT = o
OPAL_URL = no
OPAL_XML = no
OPT_FLAGS = -O3
OTOOL = 
OTOOL64 = 
PACKAGE = meme
PACKAGE_BUGREPORT = 
PACKAGE_NAME = meme
PACKAGE_STRING = meme 4.7.0
PACKAGE_TARNAME = meme
PACKAGE_URL = 
PACKAGE_VERSION = 4.7.0
PATH_SEPARATOR = :
PERL = /usr/local/bin/perl
PYTHON = /usr/bin/python
RANLIB = ranlib
SED = /bin/sed
SENDMAIL = /usr/sbin/sendmail
SET_MAKE = 
SHELL = /bin/bash
STRIP = strip
URL = http://meme.nbcr.net/meme
VERSION = 4.7.0
WEBDIR = ${prefix}/web
WEBSERVICE = 
XML2_CONFIG = 
XSLT_CONFIG = 
abs_builddir = /data/MEME/meme_4.7.0/src/parallel
abs_srcdir = /data/MEME/meme_4.7.0/src/parallel
abs_top_builddir = /data/MEME/meme_4.7.0
abs_top_srcdir = /data/MEME/meme_4.7.0
ac_ct_CC = gcc
ac_ct_DUMPBIN = 
am__include = include
am__leading_dot = .
am__quote = 
am__tar = tar --format=posix -chf - "$$tardir"
am__untar = tar -xf -
bindir = ${exec_prefix}/bin
build = x86_64-unknown-linux-gnu
build_alias = 
build_cpu = x86_64
build_os = linux-gnu
build_vendor = unknown
builddir = .
datadir = ${datarootdir}
datarootdir = ${prefix}/share
docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
dvidir = ${docdir}
exec_prefix = ${prefix}
host = x86_64-unknown-linux-gnu
host_alias = 
host_cpu = x86_64
host_os = linux-gnu
host_vendor = unknown
htmldir = ${docdir}
includedir = ${prefix}/include
infodir = ${datarootdir}/info
install_sh = ${SHELL} /data/MEME/meme_4.7.0/config/install-sh
libdir = ${exec_prefix}/lib
libexecdir = ${exec_prefix}/libexec
localedir = ${datarootdir}/locale
localstatedir = ${prefix}/var
lt_ECHO = echo
mandir = ${datarootdir}/man
mkdir_p = /bin/mkdir -p
oldincludedir = /usr/include
pdfdir = ${docdir}
prefix = /home/rmott/meme
program_transform_name = s,x,x,
psdir = ${docdir}
sbindir = ${exec_prefix}/sbin
sharedstatedir = ${prefix}/com
srcdir = .
sysconfdir = ${prefix}/etc
target_alias = 
top_build_prefix = ../../
top_builddir = ../..
top_srcdir = ../..
meme_p_LDADD = ../libcommon.la $(LIBXML2_LIBS) $(LIBXSLT_LIBS)
meme_p_CFLAGS = -I.. $(MPIFLAGS) $(LIBXML2_CFLAGS) $(LIBXSLT_CFLAGS)
meme_p_SOURCES = \
  ../banner.c \
  ../branching_search.c \
  ../calculate_p_y.c \
  ../discretize.c \
  ../display.c \
  ../dpalign.c \
  ../em.c  \
  ../init.c  \
  ../justlike.c \
  ../likelihood.c \
  ../llr.c \
  ../logs.c \
  ../meme.c \
  ../meme-print-html.c \
  ../meme_util.c \
  ../message.c \
  ../mp.c \
  ../oops.c \
	../partition.c \
  ../prior.c  \
  ../psp.c \
  ../pssm-distr.c  \
  ../read_seq_file.c \
  ../regress.c \
  ../seed.c \
  ../seed_diffs.c \
  ../seq2theta.c \
  ../sp_matrix.c \
  ../starts.c \
  ../subseq7.c \
  ../tcm.c \
  ../verbosity.c

all: all-am

.SUFFIXES:
.SUFFIXES: .c .lo .o .obj
$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
	@for dep in $?; do \
	  case '$(am__configure_deps)' in \
	    *$$dep*) \
	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
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	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu src/parallel/Makefile'; \
	$(am__cd) $(top_srcdir) && \
	  $(AUTOMAKE) --gnu src/parallel/Makefile
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$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
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	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
$(am__aclocal_m4_deps):
install-binPROGRAMS: $(bin_PROGRAMS)
	@$(NORMAL_INSTALL)
	test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
	@list='$(bin_PROGRAMS)'; test -n "$(bindir)" || list=; \
	for p in $$list; do echo "$$p $$p"; done | \
	sed 's/$(EXEEXT)$$//' | \
	while read p p1; do if test -f $$p || test -f $$p1; \
	  then echo "$$p"; echo "$$p"; else :; fi; \
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	    -e 'p;x;s,.*/,,;s/$(EXEEXT)$$//;$(transform);s/$$/$(EXEEXT)/' | \
	sed 'N;N;N;s,\n, ,g' | \
	$(AWK) 'BEGIN { files["."] = ""; dirs["."] = 1 } \
	  { d=$$3; if (dirs[d] != 1) { print "d", d; dirs[d] = 1 } \
	    if ($$2 == $$4) files[d] = files[d] " " $$1; \
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	while read type dir files; do \
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	    } \
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uninstall-binPROGRAMS:
	@$(NORMAL_UNINSTALL)
	@list='$(bin_PROGRAMS)'; test -n "$(bindir)" || list=; \
	files=`for p in $$list; do echo "$$p"; done | \
	  sed -e 'h;s,^.*/,,;s/$(EXEEXT)$$//;$(transform)' \
	      -e 's/$$/$(EXEEXT)/' `; \
	test -n "$$list" || exit 0; \
	echo " ( cd '$(DESTDIR)$(bindir)' && rm -f" $$files ")"; \
	cd "$(DESTDIR)$(bindir)" && rm -f $$files

clean-binPROGRAMS:
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	echo " rm -f" $$list; \
	rm -f $$list || exit $$?; \
	test -n "$(EXEEXT)" || exit 0; \
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meme_p$(EXEEXT): $(meme_p_OBJECTS) $(meme_p_DEPENDENCIES) 
	@rm -f meme_p$(EXEEXT)
	$(meme_p_LINK) $(meme_p_OBJECTS) $(meme_p_LDADD) $(LIBS)

mostlyclean-compile:
	-rm -f *.$(OBJEXT)

distclean-compile:
	-rm -f *.tab.c

include ./$(DEPDIR)/meme_p-banner.Po
include ./$(DEPDIR)/meme_p-branching_search.Po
include ./$(DEPDIR)/meme_p-calculate_p_y.Po
include ./$(DEPDIR)/meme_p-discretize.Po
include ./$(DEPDIR)/meme_p-display.Po
include ./$(DEPDIR)/meme_p-dpalign.Po
include ./$(DEPDIR)/meme_p-em.Po
include ./$(DEPDIR)/meme_p-init.Po
include ./$(DEPDIR)/meme_p-justlike.Po
include ./$(DEPDIR)/meme_p-likelihood.Po
include ./$(DEPDIR)/meme_p-llr.Po
include ./$(DEPDIR)/meme_p-logs.Po
include ./$(DEPDIR)/meme_p-meme-print-html.Po
include ./$(DEPDIR)/meme_p-meme.Po
include ./$(DEPDIR)/meme_p-meme_util.Po
include ./$(DEPDIR)/meme_p-message.Po
include ./$(DEPDIR)/meme_p-mp.Po
include ./$(DEPDIR)/meme_p-oops.Po
include ./$(DEPDIR)/meme_p-partition.Po
include ./$(DEPDIR)/meme_p-prior.Po
include ./$(DEPDIR)/meme_p-psp.Po
include ./$(DEPDIR)/meme_p-pssm-distr.Po
include ./$(DEPDIR)/meme_p-read_seq_file.Po
include ./$(DEPDIR)/meme_p-regress.Po
include ./$(DEPDIR)/meme_p-seed.Po
include ./$(DEPDIR)/meme_p-seed_diffs.Po
include ./$(DEPDIR)/meme_p-seq2theta.Po
include ./$(DEPDIR)/meme_p-sp_matrix.Po
include ./$(DEPDIR)/meme_p-starts.Po
include ./$(DEPDIR)/meme_p-subseq7.Po
include ./$(DEPDIR)/meme_p-tcm.Po
include ./$(DEPDIR)/meme_p-verbosity.Po

.c.o:
	$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $<
	$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po
#	source='$<' object='$@' libtool=no \
#	DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) \
#	$(COMPILE) -c $<

.c.obj:
	$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ `$(CYGPATH_W) '$<'`
	$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po
#	source='$<' object='$@' libtool=no \
#	DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) \
#	$(COMPILE) -c `$(CYGPATH_W) '$<'`

.c.lo:
	$(LTCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $<
	$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Plo
#	source='$<' object='$@' libtool=yes \
#	DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) \
#	$(LTCOMPILE) -c -o $@ $<

meme_p-banner.o: ../banner.c
	$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(meme_p_CFLAGS) $(CFLAGS) -MT meme_p-banner.o -MD -MP -MF $(DEPDIR)/meme_p-banner.Tpo -c -o meme_p-banner.o `test -f '../banner.c' || echo '$(srcdir)/'`../banner.c
	$(am__mv) $(DEPDIR)/meme_p-banner.Tpo $(DEPDIR)/meme_p-banner.Po
#	source='../banner.c' object='meme_p-banner.o' libtool=no \
#	DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) \
#	$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(meme_p_CFLAGS) $(CFLAGS) -c -o meme_p-banner.o `test -f '../banner.c' || echo '$(srcdir)/'`../banner.c

meme_p-banner.obj: ../banner.c
	$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(meme_p_CFLAGS) $(CFLAGS) -MT meme_p-banner.obj -MD -MP -MF $(DEPDIR)/meme_p-banner.Tpo -c -o meme_p-banner.obj `if test -f '../banner.c'; then $(CYGPATH_W) '../banner.c'; else $(CYGPATH_W) '$(srcdir)/../banner.c'; fi`
	$(am__mv) $(DEPDIR)/meme_p-banner.Tpo $(DEPDIR)/meme_p-banner.Po
#	source='../banner.c' object='meme_p-banner.obj' libtool=no \
#	DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) \
#	$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(meme_p_CFLAGS) $(CFLAGS) -c -o meme_p-banner.obj `if test -f '../banner.c'; then $(CYGPATH_W) '../banner.c'; else $(CYGPATH_W) '$(srcdir)/../banner.c'; fi`

meme_p-branching_search.o: ../branching_search.c
	$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(meme_p_CFLAGS) $(CFLAGS) -MT meme_p-branching_search.o -MD -MP -MF $(DEPDIR)/meme_p-branching_search.Tpo -c -o meme_p-branching_search.o `test -f '../branching_search.c' || echo '$(srcdir)/'`../branching_search.c
	$(am__mv) $(DEPDIR)/meme_p-branching_search.Tpo $(DEPDIR)/meme_p-branching_search.Po
#	source='../branching_search.c' object='meme_p-branching_search.o' libtool=no \
#	DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) \
#	$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(meme_p_CFLAGS) $(CFLAGS) -c -o meme_p-branching_search.o `test -f '../branching_search.c' || echo '$(srcdir)/'`../branching_search.c

meme_p-branching_search.obj: ../branching_search.c
	$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(meme_p_CFLAGS) $(CFLAGS) -MT meme_p-branching_search.obj -MD -MP -MF $(DEPDIR)/meme_p-branching_search.Tpo -c -o meme_p-branching_search.obj `if test -f '../branching_search.c'; then $(CYGPATH_W) '../branching_search.c'; else $(CYGPATH_W) '$(srcdir)/../branching_search.c'; fi`
	$(am__mv) $(DEPDIR)/meme_p-branching_search.Tpo $(DEPDIR)/meme_p-branching_search.Po
#	source='../branching_search.c' object='meme_p-branching_search.obj' libtool=no \
#	DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) \
#	$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(meme_p_CFLAGS) $(CFLAGS) -c -o meme_p-branching_search.obj `if test -f '../branching_search.c'; then $(CYGPATH_W) '../branching_search.c'; else $(CYGPATH_W) '$(srcdir)/../branching_search.c'; fi`

meme_p-calculate_p_y.o: ../calculate_p_y.c
	$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(meme_p_CFLAGS) $(CFLAGS) -MT meme_p-calculate_p_y.o -MD -MP -MF $(DEPDIR)/meme_p-calculate_p_y.Tpo -c -o meme_p-calculate_p_y.o `test -f '../calculate_p_y.c' || echo '$(srcdir)/'`../calculate_p_y.c
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meme_p-calculate_p_y.obj: ../calculate_p_y.c
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meme_p-discretize.o: ../discretize.c
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meme_p-discretize.obj: ../discretize.c
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meme_p-display.o: ../display.c
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meme_p-display.obj: ../display.c
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meme_p-dpalign.o: ../dpalign.c
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meme_p-dpalign.obj: ../dpalign.c
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meme_p-em.o: ../em.c
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meme_p-em.obj: ../em.c
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meme_p-init.o: ../init.c
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meme_p-init.obj: ../init.c
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meme_p-justlike.o: ../justlike.c
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meme_p-justlike.obj: ../justlike.c
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meme_p-likelihood.o: ../likelihood.c
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meme_p-likelihood.obj: ../likelihood.c
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meme_p-llr.o: ../llr.c
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meme_p-llr.obj: ../llr.c
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meme_p-logs.o: ../logs.c
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meme_p-logs.obj: ../logs.c
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meme_p-meme.o: ../meme.c
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meme_p-meme.obj: ../meme.c
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meme_p-meme-print-html.o: ../meme-print-html.c
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meme_p-meme-print-html.obj: ../meme-print-html.c
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meme_p-meme_util.o: ../meme_util.c
	$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(meme_p_CFLAGS) $(CFLAGS) -MT meme_p-meme_util.o -MD -MP -MF $(DEPDIR)/meme_p-meme_util.Tpo -c -o meme_p-meme_util.o `test -f '../meme_util.c' || echo '$(srcdir)/'`../meme_util.c
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meme_p-meme_util.obj: ../meme_util.c
	$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(meme_p_CFLAGS) $(CFLAGS) -MT meme_p-meme_util.obj -MD -MP -MF $(DEPDIR)/meme_p-meme_util.Tpo -c -o meme_p-meme_util.obj `if test -f '../meme_util.c'; then $(CYGPATH_W) '../meme_util.c'; else $(CYGPATH_W) '$(srcdir)/../meme_util.c'; fi`
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meme_p-message.o: ../message.c
	$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(meme_p_CFLAGS) $(CFLAGS) -MT meme_p-message.o -MD -MP -MF $(DEPDIR)/meme_p-message.Tpo -c -o meme_p-message.o `test -f '../message.c' || echo '$(srcdir)/'`../message.c
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#	$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(meme_p_CFLAGS) $(CFLAGS) -c -o meme_p-message.o `test -f '../message.c' || echo '$(srcdir)/'`../message.c

meme_p-message.obj: ../message.c
	$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(meme_p_CFLAGS) $(CFLAGS) -MT meme_p-message.obj -MD -MP -MF $(DEPDIR)/meme_p-message.Tpo -c -o meme_p-message.obj `if test -f '../message.c'; then $(CYGPATH_W) '../message.c'; else $(CYGPATH_W) '$(srcdir)/../message.c'; fi`
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meme_p-mp.o: ../mp.c
	$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(meme_p_CFLAGS) $(CFLAGS) -MT meme_p-mp.o -MD -MP -MF $(DEPDIR)/meme_p-mp.Tpo -c -o meme_p-mp.o `test -f '../mp.c' || echo '$(srcdir)/'`../mp.c
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meme_p-mp.obj: ../mp.c
	$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(meme_p_CFLAGS) $(CFLAGS) -MT meme_p-mp.obj -MD -MP -MF $(DEPDIR)/meme_p-mp.Tpo -c -o meme_p-mp.obj `if test -f '../mp.c'; then $(CYGPATH_W) '../mp.c'; else $(CYGPATH_W) '$(srcdir)/../mp.c'; fi`
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meme_p-oops.o: ../oops.c
	$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(meme_p_CFLAGS) $(CFLAGS) -MT meme_p-oops.o -MD -MP -MF $(DEPDIR)/meme_p-oops.Tpo -c -o meme_p-oops.o `test -f '../oops.c' || echo '$(srcdir)/'`../oops.c
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meme_p-oops.obj: ../oops.c
	$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(meme_p_CFLAGS) $(CFLAGS) -MT meme_p-oops.obj -MD -MP -MF $(DEPDIR)/meme_p-oops.Tpo -c -o meme_p-oops.obj `if test -f '../oops.c'; then $(CYGPATH_W) '../oops.c'; else $(CYGPATH_W) '$(srcdir)/../oops.c'; fi`
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meme_p-partition.o: ../partition.c
	$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(meme_p_CFLAGS) $(CFLAGS) -MT meme_p-partition.o -MD -MP -MF $(DEPDIR)/meme_p-partition.Tpo -c -o meme_p-partition.o `test -f '../partition.c' || echo '$(srcdir)/'`../partition.c
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meme_p-partition.obj: ../partition.c
	$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(meme_p_CFLAGS) $(CFLAGS) -MT meme_p-partition.obj -MD -MP -MF $(DEPDIR)/meme_p-partition.Tpo -c -o meme_p-partition.obj `if test -f '../partition.c'; then $(CYGPATH_W) '../partition.c'; else $(CYGPATH_W) '$(srcdir)/../partition.c'; fi`
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meme_p-prior.o: ../prior.c
	$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(meme_p_CFLAGS) $(CFLAGS) -MT meme_p-prior.o -MD -MP -MF $(DEPDIR)/meme_p-prior.Tpo -c -o meme_p-prior.o `test -f '../prior.c' || echo '$(srcdir)/'`../prior.c
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meme_p-prior.obj: ../prior.c
	$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(meme_p_CFLAGS) $(CFLAGS) -MT meme_p-prior.obj -MD -MP -MF $(DEPDIR)/meme_p-prior.Tpo -c -o meme_p-prior.obj `if test -f '../prior.c'; then $(CYGPATH_W) '../prior.c'; else $(CYGPATH_W) '$(srcdir)/../prior.c'; fi`
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meme_p-psp.o: ../psp.c
	$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(meme_p_CFLAGS) $(CFLAGS) -MT meme_p-psp.o -MD -MP -MF $(DEPDIR)/meme_p-psp.Tpo -c -o meme_p-psp.o `test -f '../psp.c' || echo '$(srcdir)/'`../psp.c
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meme_p-psp.obj: ../psp.c
	$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(meme_p_CFLAGS) $(CFLAGS) -MT meme_p-psp.obj -MD -MP -MF $(DEPDIR)/meme_p-psp.Tpo -c -o meme_p-psp.obj `if test -f '../psp.c'; then $(CYGPATH_W) '../psp.c'; else $(CYGPATH_W) '$(srcdir)/../psp.c'; fi`
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meme_p-pssm-distr.o: ../pssm-distr.c
	$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(meme_p_CFLAGS) $(CFLAGS) -MT meme_p-pssm-distr.o -MD -MP -MF $(DEPDIR)/meme_p-pssm-distr.Tpo -c -o meme_p-pssm-distr.o `test -f '../pssm-distr.c' || echo '$(srcdir)/'`../pssm-distr.c
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meme_p-pssm-distr.obj: ../pssm-distr.c
	$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(meme_p_CFLAGS) $(CFLAGS) -MT meme_p-pssm-distr.obj -MD -MP -MF $(DEPDIR)/meme_p-pssm-distr.Tpo -c -o meme_p-pssm-distr.obj `if test -f '../pssm-distr.c'; then $(CYGPATH_W) '../pssm-distr.c'; else $(CYGPATH_W) '$(srcdir)/../pssm-distr.c'; fi`
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meme_p-read_seq_file.o: ../read_seq_file.c
	$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(meme_p_CFLAGS) $(CFLAGS) -MT meme_p-read_seq_file.o -MD -MP -MF $(DEPDIR)/meme_p-read_seq_file.Tpo -c -o meme_p-read_seq_file.o `test -f '../read_seq_file.c' || echo '$(srcdir)/'`../read_seq_file.c
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meme_p-read_seq_file.obj: ../read_seq_file.c
	$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(meme_p_CFLAGS) $(CFLAGS) -MT meme_p-read_seq_file.obj -MD -MP -MF $(DEPDIR)/meme_p-read_seq_file.Tpo -c -o meme_p-read_seq_file.obj `if test -f '../read_seq_file.c'; then $(CYGPATH_W) '../read_seq_file.c'; else $(CYGPATH_W) '$(srcdir)/../read_seq_file.c'; fi`
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meme_p-regress.o: ../regress.c
	$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(meme_p_CFLAGS) $(CFLAGS) -MT meme_p-regress.o -MD -MP -MF $(DEPDIR)/meme_p-regress.Tpo -c -o meme_p-regress.o `test -f '../regress.c' || echo '$(srcdir)/'`../regress.c
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meme_p-regress.obj: ../regress.c
	$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(meme_p_CFLAGS) $(CFLAGS) -MT meme_p-regress.obj -MD -MP -MF $(DEPDIR)/meme_p-regress.Tpo -c -o meme_p-regress.obj `if test -f '../regress.c'; then $(CYGPATH_W) '../regress.c'; else $(CYGPATH_W) '$(srcdir)/../regress.c'; fi`
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meme_p-seed.o: ../seed.c
	$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(meme_p_CFLAGS) $(CFLAGS) -MT meme_p-seed.o -MD -MP -MF $(DEPDIR)/meme_p-seed.Tpo -c -o meme_p-seed.o `test -f '../seed.c' || echo '$(srcdir)/'`../seed.c
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meme_p-seed.obj: ../seed.c
	$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(meme_p_CFLAGS) $(CFLAGS) -MT meme_p-seed.obj -MD -MP -MF $(DEPDIR)/meme_p-seed.Tpo -c -o meme_p-seed.obj `if test -f '../seed.c'; then $(CYGPATH_W) '../seed.c'; else $(CYGPATH_W) '$(srcdir)/../seed.c'; fi`
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meme_p-seed_diffs.o: ../seed_diffs.c
	$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(meme_p_CFLAGS) $(CFLAGS) -MT meme_p-seed_diffs.o -MD -MP -MF $(DEPDIR)/meme_p-seed_diffs.Tpo -c -o meme_p-seed_diffs.o `test -f '../seed_diffs.c' || echo '$(srcdir)/'`../seed_diffs.c
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meme_p-seed_diffs.obj: ../seed_diffs.c
	$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(meme_p_CFLAGS) $(CFLAGS) -MT meme_p-seed_diffs.obj -MD -MP -MF $(DEPDIR)/meme_p-seed_diffs.Tpo -c -o meme_p-seed_diffs.obj `if test -f '../seed_diffs.c'; then $(CYGPATH_W) '../seed_diffs.c'; else $(CYGPATH_W) '$(srcdir)/../seed_diffs.c'; fi`
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meme_p-seq2theta.o: ../seq2theta.c
	$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(meme_p_CFLAGS) $(CFLAGS) -MT meme_p-seq2theta.o -MD -MP -MF $(DEPDIR)/meme_p-seq2theta.Tpo -c -o meme_p-seq2theta.o `test -f '../seq2theta.c' || echo '$(srcdir)/'`../seq2theta.c
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