******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.0.0 (Release date: 2008-07-12 05:23:09 +1000 (Sat, 12 Jul 2008)) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /home/t.bailey/MEME/SVNROOT/trunk/scripts/../tests/common/adh.s ALPHABET= ACDEFGHIKLMNPQRSTVWY Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ 2BHD_STREX 1.0000 255 3BHD_COMTE 1.0000 253 ADH_DROME 1.0000 255 AP27_MOUSE 1.0000 244 BA72_EUBSP 1.0000 249 BDH_HUMAN 1.0000 343 BPHB_PSEPS 1.0000 275 BUDC_KLETE 1.0000 241 DHES_HUMAN 1.0000 327 DHGB_BACME 1.0000 262 DHII_HUMAN 1.0000 292 DHMA_FLAS1 1.0000 270 ENTA_ECOLI 1.0000 248 FIXR_BRAJA 1.0000 278 GUTD_ECOLI 1.0000 259 HDE_CANTR 1.0000 906 HDHA_ECOLI 1.0000 255 LIGD_PSEPA 1.0000 305 NODG_RHIME 1.0000 245 RIDH_KLEAE 1.0000 249 YINL_LISMO 1.0000 248 YRTP_BACSU 1.0000 238 CSGA_MYXXA 1.0000 166 DHB2_HUMAN 1.0000 387 DHB3_HUMAN 1.0000 310 DHCA_HUMAN 1.0000 276 FABI_ECOLI 1.0000 262 FVT1_HUMAN 1.0000 332 HMTR_LEIMA 1.0000 287 MAS1_AGRRA 1.0000 476 PCR_PEA 1.0000 399 RFBB_NEIGO 1.0000 346 YURA_MYXXA 1.0000 258 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /home/t.bailey/MEME/SVNROOT/trunk/scripts/../tests/common/adh.s -text -mod oops -protein -nostatus -nmotifs 2 -minw 8 model: mod= oops nmotifs= 2 evt= inf object function= E-value of product of p-values width: minw= 8 maxw= 50 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 33 maxsites= 33 wnsites= 0.8 theta: prob= 1 spmap= pam spfuzz= 120 global: substring= yes branching= no wbranch= no em: prior= dmix b= 0 maxiter= 50 distance= 1e-05 data: n= 9996 N= 33 sample: seed= 0 seqfrac= 1 Dirichlet mixture priors file: prior30.plib Letter frequencies in dataset: A 0.111 C 0.012 D 0.050 E 0.055 F 0.036 G 0.090 H 0.018 I 0.057 K 0.052 L 0.092 M 0.027 N 0.041 P 0.041 Q 0.029 R 0.049 S 0.064 T 0.057 V 0.083 W 0.010 Y 0.027 Background letter frequencies (from dataset with add-one prior applied): A 0.111 C 0.012 D 0.050 E 0.055 F 0.036 G 0.090 H 0.018 I 0.057 K 0.052 L 0.092 M 0.027 N 0.041 P 0.041 Q 0.029 R 0.049 S 0.064 T 0.057 V 0.083 W 0.010 Y 0.027 ******************************************************************************** ******************************************************************************** MOTIF 1 width = 29 sites = 33 llr = 1118 E-value = 3.6e-165 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A :162:56112:1:215:::4:::::::11 pos.-specific C :1:::::::::::1:::::::::::1:1: probability D ::::::::1:::1::::2::::::::::: matrix E ::::::::1:::21:::5:111::::::: F :::::31:::2:::::1:::::::::::: G :2:::13::4:::1:1:::11:5:1:11: H :::::::::1::1:::1::::1::::::: I :::::::11:::::::::1::::5:2:13 K ::::9:::1:::2:::1::121::1:1:: L :::::::31:6:1:5:215::1:::::12 M ::1::::1:2:1::2:1:1:::::::::: N :::::::::1::::::::::::2:1:41: P ::::::::::::::::::::3:::::::: Q ::::::::::::1::11:::11::::::: R ::::::::2:::3::22::21:1:4:1:: S :426::1:11:213:::::1:11:::21: T :1:2::::1::3:1::::::11::1:11: V :::::::41::2:1::1:1::::316123 W :::::1::::::::::::::::::::::: Y 9:::::::::::::::::2::2::::::: bits 6.7 6.0 5.4 4.7 * Relative 4.0 * * Entropy 3.4 * * (48.9 bits) 2.7 * ** * 2.0 * **** * * * * * 1.3 ******** ******* ** * ***** * 0.7 ***************************** 0.0 ----------------------------- Multilevel YSASKAAVxGLTRSLAxELAPxGIRVNVV consensus FGL FSE MR D V I sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ----------------------------- YRTP_BACSU 155 1.57e-22 GQRGAAVTSA YSASKFAVLGLTESLMQEVRKHNIRVSAL TPSTVASDMS AP27_MOUSE 149 6.97e-22 AHVTFPNLIT YSSTKGAMTMLTKAMAMELGPHKIRVNSV NPTVVLTDMG NODG_RHIME 152 1.08e-21 GAIGNPGQTN YCASKAGMIGFSKSLAQEIATRNITVNCV APGFIESAMT BUDC_KLETE 152 3.84e-21 GHVGNPELAV YSSSKFAVRGLTQTAARDLAPLGITVNGF CPGIVKTPMW FIXR_BRAJA 189 6.66e-21 SRVHPFAGSA YATSKAALASLTRELAHDYAPHGIRVNAI APGEIRTDML DHGB_BACME 160 7.13e-20 WKIPWPLFVH YAASKGGMKLMTETLALEYAPKGIRVNNI GPGAINTPIN HMTR_LEIMA 193 3.17e-19 TNQPLLGYTI YTMAKGALEGLTRSAALELAPLQIRVNGV GPGLSVLVDD GUTD_ECOLI 154 4.04e-19 GKVGSKHNSG YSAAKFGGVGLTQSLALDLAEYGITVHSL MLGNLLKSPM YURA_MYXXA 160 5.80e-19 AGFRGLPATR YSASKAFLSTFMESLRVDLRGTGVRVTCI YPGFVKSELT 2BHD_STREX 152 1.05e-18 GLMGLALTSS YGASKWGVRGLSKLAAVELGTDRIRVNSV HPGMTYTPMT HDHA_ECOLI 159 1.18e-18 AENKNINMTS YASSKAAASHLVRNMAFDLGEKNIRVNGI APGAILTDAL DHB2_HUMAN 232 2.37e-18 GGAPMERLAS YGSSKAAVTMFSSVMRLELSKWGIKVASI QPGGFLTNIA DHMA_FLAS1 165 5.86e-18 SFMAEPEAAA YVAAKGGVAMLTRAMAVDLARHGILVNMI APGPVDVTGN HDE_CANTR 467 9.13e-18 GIYGNFGQAN YSSSKAGILGLSKTMAIEGAKNNIKVNIV APHAETAMTL FVT1_HUMAN 186 3.01e-17 GQLGLFGFTA YSASKFAIRGLAEALQMEVKPYNVYITVA YPPDTDTPGF BDH_HUMAN 208 8.60e-17 GRMANPARSP YCITKFGVEAFSDCLRYEMYPLGVKVSVV EPGNFIAATS RIDH_KLEAE 160 1.17e-16 GVVPVIWEPV YTASKFAVQAFVHTTRRQVAQYGVRVGAV LPGPVVTALL DHES_HUMAN 155 1.44e-16 GLMGLPFNDV YCASKFALEGLCESLAVLLLPFGVHLSLI ECGPVHTAFM BA72_EUBSP 157 2.38e-16 GIFGSLSGVG YPASKASVIGLTHGLGREIIRKNIRVVGV APGVVNTDMT LIGD_PSEPA 157 1.38e-15 GFMGSALAGP YSAAKAASINLMEGYRQGLEKYGIGVSVC TPANIKSNIA ENTA_ECOLI 144 1.84e-15 AHTPRIGMSA YGASKAALKSLALSVGLELAGSGVRCNVV SPGSTDTDMQ DHII_HUMAN 183 1.84e-15 GKVAYPMVAA YSASKFALDGFFSSIRKEYSVSRVNVSIT LCVLGLIDTE 3BHD_COMTE 151 8.09e-15 SWLPIEQYAG YSASKAAVSALTRAAALSCRKQGYAIRVN SIHPDGIYTP DHB3_HUMAN 198 9.70e-15 ALFPWPLYSM YSASKAFVCAFSKALQEEYKAKEVIIQVL TPYAVSTAMT RFBB_NEIGO 165 1.66e-14 ETTPYAPSSP YSASKAAADHLVRAWQRTYRLPSIVSNCS NNYGPRQFPE YINL_LISMO 154 3.35e-14 GLKAYPGGAV YGATKWAVRDLMEVLRMESAQEGTNIRTA TIYPAAINTE CSGA_MYXXA 88 1.84e-12 AANTDGGAYA YRMSKAALNMAVRSMSTDLRPEGFVTVLL HPGWVQTDMG BPHB_PSEPS 153 1.99e-12 GFYPNGGGPL YTAAKQAIVGLVRELAFELAPYVRVNGVG PGGMNSDMRG FABI_ECOLI 159 4.59e-12 AERAIPNYNV MGLAKASLEANVRYMANAMGPEGVRVNAI SAGPIRTLAA ADH_DROME 152 5.74e-12 GFNAIYQVPV YSGTKAAVVNFTSSLAKLAPITGVTAYTV NPGITRTTLV DHCA_HUMAN 193 4.30e-10 HQKEGWPSSA YGVTKIGVTVLSRIHARKLSEQRKGDKIL LNACCPGWVR PCR_PEA 26 2.66e-08 PKEGKIGASL KDSTLFGVSSLSDSLKGDFTSSALRCKEL RQKVGAVRAE MAS1_AGRRA 349 5.81e-08 VDYQRFHLQW YINCVAPLRMTELCLPHLYETGSGRIVNI NSMSGQRVLN -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- YRTP_BACSU 1.6e-22 154_[1]_55 AP27_MOUSE 7e-22 148_[1]_67 NODG_RHIME 1.1e-21 151_[1]_65 BUDC_KLETE 3.8e-21 151_[1]_61 FIXR_BRAJA 6.7e-21 188_[1]_61 DHGB_BACME 7.1e-20 159_[1]_74 HMTR_LEIMA 3.2e-19 192_[1]_66 GUTD_ECOLI 4e-19 153_[1]_77 YURA_MYXXA 5.8e-19 159_[1]_70 2BHD_STREX 1e-18 151_[1]_75 HDHA_ECOLI 1.2e-18 158_[1]_68 DHB2_HUMAN 2.4e-18 231_[1]_127 DHMA_FLAS1 5.9e-18 164_[1]_77 HDE_CANTR 9.1e-18 466_[1]_411 FVT1_HUMAN 3e-17 185_[1]_118 BDH_HUMAN 8.6e-17 207_[1]_107 RIDH_KLEAE 1.2e-16 159_[1]_61 DHES_HUMAN 1.4e-16 154_[1]_144 BA72_EUBSP 2.4e-16 156_[1]_64 LIGD_PSEPA 1.4e-15 156_[1]_120 ENTA_ECOLI 1.8e-15 143_[1]_76 DHII_HUMAN 1.8e-15 182_[1]_81 3BHD_COMTE 8.1e-15 150_[1]_74 DHB3_HUMAN 9.7e-15 197_[1]_84 RFBB_NEIGO 1.7e-14 164_[1]_153 YINL_LISMO 3.3e-14 153_[1]_66 CSGA_MYXXA 1.8e-12 87_[1]_50 BPHB_PSEPS 2e-12 152_[1]_94 FABI_ECOLI 4.6e-12 158_[1]_75 ADH_DROME 5.7e-12 151_[1]_75 DHCA_HUMAN 4.3e-10 192_[1]_55 PCR_PEA 2.7e-08 25_[1]_345 MAS1_AGRRA 5.8e-08 348_[1]_99 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=29 seqs=33 YRTP_BACSU ( 155) YSASKFAVLGLTESLMQEVRKHNIRVSAL 1 AP27_MOUSE ( 149) YSSTKGAMTMLTKAMAMELGPHKIRVNSV 1 NODG_RHIME ( 152) YCASKAGMIGFSKSLAQEIATRNITVNCV 1 BUDC_KLETE ( 152) YSSSKFAVRGLTQTAARDLAPLGITVNGF 1 FIXR_BRAJA ( 189) YATSKAALASLTRELAHDYAPHGIRVNAI 1 DHGB_BACME ( 160) YAASKGGMKLMTETLALEYAPKGIRVNNI 1 HMTR_LEIMA ( 193) YTMAKGALEGLTRSAALELAPLQIRVNGV 1 GUTD_ECOLI ( 154) YSAAKFGGVGLTQSLALDLAEYGITVHSL 1 YURA_MYXXA ( 160) YSASKAFLSTFMESLRVDLRGTGVRVTCI 1 2BHD_STREX ( 152) YGASKWGVRGLSKLAAVELGTDRIRVNSV 1 HDHA_ECOLI ( 159) YASSKAAASHLVRNMAFDLGEKNIRVNGI 1 DHB2_HUMAN ( 232) YGSSKAAVTMFSSVMRLELSKWGIKVASI 1 DHMA_FLAS1 ( 165) YVAAKGGVAMLTRAMAVDLARHGILVNMI 1 HDE_CANTR ( 467) YSSSKAGILGLSKTMAIEGAKNNIKVNIV 1 FVT1_HUMAN ( 186) YSASKFAIRGLAEALQMEVKPYNVYITVA 1 BDH_HUMAN ( 208) YCITKFGVEAFSDCLRYEMYPLGVKVSVV 1 RIDH_KLEAE ( 160) YTASKFAVQAFVHTTRRQVAQYGVRVGAV 1 DHES_HUMAN ( 155) YCASKFALEGLCESLAVLLLPFGVHLSLI 1 BA72_EUBSP ( 157) YPASKASVIGLTHGLGREIIRKNIRVVGV 1 LIGD_PSEPA ( 157) YSAAKAASINLMEGYRQGLEKYGIGVSVC 1 ENTA_ECOLI ( 144) YGASKAALKSLALSVGLELAGSGVRCNVV 1 DHII_HUMAN ( 183) YSASKFALDGFFSSIRKEYSVSRVNVSIT 1 3BHD_COMTE ( 151) YSASKAAVSALTRAAALSCRKQGYAIRVN 1 DHB3_HUMAN ( 198) YSASKAFVCAFSKALQEEYKAKEVIIQVL 1 RFBB_NEIGO ( 165) YSASKAAADHLVRAWQRTYRLPSIVSNCS 1 YINL_LISMO ( 154) YGATKWAVRDLMEVLRMESAQEGTNIRTA 1 CSGA_MYXXA ( 88) YRMSKAALNMAVRSMSTDLRPEGFVTVLL 1 BPHB_PSEPS ( 153) YTAAKQAIVGLVRELAFELAPYVRVNGVG 1 FABI_ECOLI ( 159) MGLAKASLEANVRYMANAMGPEGVRVNAI 1 ADH_DROME ( 152) YSGTKAAVVNFTSSLAKLAPITGVTAYTV 1 DHCA_HUMAN ( 193) YGVTKIGVTVLSRIHARKLSEQRKGDKIL 1 PCR_PEA ( 26) KDSTLFGVSSLSDSLKGDFTSSALRCKEL 1 MAS1_AGRRA ( 349) YINCVAPLRMTELCLPHLYETGSGRIVNI 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 20 w= 29 n= 9072 bayes= 8.09755 E= 3.6e-165 -715 -495 -697 -690 -169 -730 -301 -560 -80 -505 12 -548 -660 -511 -562 -603 -623 -607 -214 508 -51 240 -90 -248 -333 53 -232 -106 -219 -337 -278 -209 -72 -192 -79 276 81 -153 -332 -305 257 -64 -390 -343 -320 -160 -326 -144 -343 -193 26 -120 -436 -313 -349 86 -117 -123 -309 -358 57 116 -511 -541 -503 -420 -453 -532 -480 -548 -469 -352 -433 -438 -470 325 161 -493 -484 -492 -432 -317 -481 -429 -523 -520 -342 -409 413 -328 -416 -348 -434 -343 -56 -432 -392 -323 -374 -452 205 -260 -558 -504 282 34 -354 -70 -473 -331 -297 -444 -475 -1 -467 -327 -334 -310 255 -222 235 -272 -630 -622 68 154 -557 -603 -635 -616 -544 -517 -44 -518 -595 5 -371 -482 -571 -615 -79 -196 -500 -423 -233 -160 -307 78 -390 147 166 -379 -411 -325 -385 -95 -251 222 -274 -264 -75 107 27 110 -355 -358 -150 45 46 -69 -279 -14 -296 44 145 85 61 -5 -331 -279 33 -284 -54 -168 -322 176 159 -291 -150 -137 223 56 -315 -120 -208 49 -61 -125 -319 -277 -215 -277 -532 -447 216 -557 -359 -167 -423 288 23 -96 -427 -324 -395 -412 -123 -249 -310 -327 -89 117 -466 -101 -26 -476 -318 -198 -376 -256 155 -324 -415 -315 -380 173 259 99 -304 -301 -295 -344 26 181 -386 -383 160 -385 151 -69 -305 -196 -322 112 242 49 -236 -378 -354 -305 56 211 -348 6 -258 -72 -244 -52 -256 -112 -197 -40 -364 -217 -294 224 101 -30 -286 10 -3 -202 -498 -419 -223 -472 54 -37 -388 234 272 -382 -407 -317 -379 -325 -74 -85 143 8 204 -307 -263 -189 -396 -69 -189 -390 -14 -378 3 -217 -51 156 193 -72 -250 -369 -361 -321 -277 -281 -236 -39 57 -152 158 -81 39 79 153 -21 -313 156 145 -204 -60 39 -316 8 -164 -465 216 305 -496 -158 -268 -472 -47 -16 -396 -277 -379 31 -306 -90 -81 -453 -469 -411 -157 123 -496 -418 -13 -163 -303 31 -385 220 113 -376 -406 -318 -379 -98 -251 25 -270 253 149 -311 -209 33 -354 22 -151 -97 45 -149 -278 -172 -46 -92 145 50 -59 -348 -330 5 -142 -318 -208 76 -356 -68 -151 -97 147 -150 -280 -172 276 112 34 -61 60 -140 -332 -280 -268 -317 -47 77 -38 -150 250 -359 121 -18 -279 -15 -46 112 -37 50 13 -352 139 222 -156 -337 -229 -48 -391 239 -183 -396 -30 -386 -318 190 -329 27 74 -6 -247 -151 -356 -313 -373 -253 -409 -399 -124 -294 -366 345 -198 -52 -101 -354 -429 -337 -205 -342 -172 118 -314 -111 -144 -290 -233 -162 -327 -68 73 -84 85 -139 -256 56 -312 -113 285 -203 97 1 -321 8 -146 95 -193 -330 -284 -443 -265 73 -338 -176 -228 -167 -320 -310 -312 -198 -112 308 -343 -388 -142 -319 -207 -138 -356 -68 75 -360 46 -347 -280 302 -296 44 34 113 13 -5 -332 6 6 273 -480 -92 -230 26 -297 77 -371 -32 33 44 -403 -310 -372 80 13 130 -270 -259 -80 124 -493 -417 -13 -162 -302 218 -384 94 -169 -50 -406 -320 -380 -96 -66 176 -270 -259 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 20 w= 29 nsites= 33 E= 3.6e-165 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.030303 0.000000 0.030303 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.939394 0.090909 0.090909 0.030303 0.000000 0.000000 0.181818 0.000000 0.030303 0.000000 0.000000 0.000000 0.000000 0.030303 0.000000 0.030303 0.393939 0.090909 0.030303 0.000000 0.000000 0.575758 0.000000 0.000000 0.000000 0.000000 0.030303 0.000000 0.030303 0.000000 0.030303 0.060606 0.030303 0.000000 0.000000 0.000000 0.181818 0.030303 0.030303 0.000000 0.000000 0.181818 0.030303 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.606061 0.181818 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.939394 0.030303 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.030303 0.000000 0.000000 0.484848 0.000000 0.000000 0.000000 0.272727 0.121212 0.000000 0.030303 0.000000 0.000000 0.000000 0.000000 0.000000 0.030303 0.000000 0.000000 0.000000 0.000000 0.060606 0.000000 0.575758 0.000000 0.000000 0.000000 0.060606 0.272727 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.030303 0.000000 0.000000 0.060606 0.000000 0.000000 0.000000 0.000000 0.060606 0.000000 0.000000 0.000000 0.000000 0.030303 0.000000 0.090909 0.000000 0.272727 0.090909 0.000000 0.000000 0.000000 0.000000 0.030303 0.000000 0.424242 0.000000 0.000000 0.060606 0.030303 0.060606 0.121212 0.000000 0.000000 0.000000 0.090909 0.060606 0.060606 0.000000 0.030303 0.000000 0.030303 0.151515 0.121212 0.090909 0.090909 0.000000 0.000000 0.151515 0.000000 0.030303 0.000000 0.000000 0.363636 0.060606 0.000000 0.000000 0.030303 0.151515 0.060606 0.000000 0.000000 0.000000 0.090909 0.030303 0.030303 0.000000 0.000000 0.030303 0.000000 0.000000 0.000000 0.242424 0.000000 0.000000 0.000000 0.000000 0.636364 0.030303 0.030303 0.000000 0.000000 0.000000 0.000000 0.030303 0.000000 0.000000 0.000000 0.060606 0.030303 0.000000 0.030303 0.030303 0.000000 0.000000 0.000000 0.000000 0.000000 0.090909 0.000000 0.000000 0.000000 0.000000 0.242424 0.333333 0.181818 0.000000 0.000000 0.000000 0.000000 0.060606 0.212121 0.000000 0.000000 0.060606 0.000000 0.151515 0.060606 0.000000 0.000000 0.000000 0.060606 0.303030 0.090909 0.000000 0.000000 0.000000 0.000000 0.181818 0.060606 0.000000 0.060606 0.000000 0.060606 0.000000 0.030303 0.000000 0.030303 0.000000 0.030303 0.000000 0.000000 0.000000 0.333333 0.121212 0.060606 0.000000 0.030303 0.121212 0.000000 0.000000 0.000000 0.000000 0.000000 0.030303 0.030303 0.000000 0.484848 0.212121 0.000000 0.000000 0.000000 0.000000 0.000000 0.030303 0.030303 0.030303 0.030303 0.515152 0.000000 0.000000 0.000000 0.000000 0.060606 0.000000 0.000000 0.030303 0.000000 0.030303 0.000000 0.030303 0.090909 0.212121 0.030303 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.030303 0.060606 0.030303 0.060606 0.030303 0.060606 0.181818 0.090909 0.030303 0.000000 0.090909 0.151515 0.000000 0.030303 0.121212 0.000000 0.030303 0.030303 0.000000 0.242424 0.484848 0.000000 0.030303 0.000000 0.000000 0.030303 0.090909 0.000000 0.000000 0.000000 0.030303 0.000000 0.030303 0.030303 0.000000 0.000000 0.000000 0.030303 0.030303 0.000000 0.000000 0.030303 0.030303 0.000000 0.060606 0.000000 0.454545 0.060606 0.000000 0.000000 0.000000 0.000000 0.030303 0.000000 0.090909 0.000000 0.181818 0.363636 0.000000 0.000000 0.060606 0.000000 0.121212 0.000000 0.030303 0.060606 0.030303 0.000000 0.000000 0.030303 0.000000 0.151515 0.090909 0.030303 0.000000 0.000000 0.030303 0.030303 0.000000 0.000000 0.090909 0.000000 0.060606 0.000000 0.030303 0.151515 0.030303 0.000000 0.000000 0.333333 0.060606 0.060606 0.030303 0.090909 0.030303 0.000000 0.000000 0.000000 0.000000 0.030303 0.090909 0.030303 0.030303 0.121212 0.000000 0.121212 0.090909 0.000000 0.030303 0.030303 0.060606 0.030303 0.090909 0.060606 0.000000 0.030303 0.151515 0.030303 0.000000 0.000000 0.030303 0.000000 0.515152 0.000000 0.000000 0.030303 0.000000 0.000000 0.181818 0.000000 0.030303 0.090909 0.060606 0.000000 0.030303 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.030303 0.030303 0.000000 0.484848 0.030303 0.030303 0.000000 0.000000 0.000000 0.000000 0.030303 0.000000 0.030303 0.303030 0.000000 0.030303 0.030303 0.000000 0.000000 0.000000 0.000000 0.060606 0.030303 0.030303 0.090909 0.030303 0.000000 0.060606 0.000000 0.000000 0.424242 0.000000 0.121212 0.090909 0.000000 0.030303 0.030303 0.060606 0.030303 0.000000 0.000000 0.000000 0.000000 0.151515 0.000000 0.030303 0.000000 0.030303 0.000000 0.000000 0.000000 0.030303 0.030303 0.606061 0.000000 0.000000 0.030303 0.000000 0.000000 0.000000 0.000000 0.060606 0.030303 0.000000 0.060606 0.000000 0.000000 0.393939 0.000000 0.030303 0.060606 0.151515 0.060606 0.090909 0.000000 0.030303 0.121212 0.090909 0.000000 0.030303 0.000000 0.121212 0.000000 0.090909 0.000000 0.060606 0.030303 0.060606 0.000000 0.000000 0.000000 0.121212 0.060606 0.212121 0.000000 0.000000 0.060606 0.030303 0.000000 0.000000 0.030303 0.030303 0.000000 0.272727 0.000000 0.181818 0.000000 0.030303 0.000000 0.000000 0.000000 0.030303 0.030303 0.303030 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- YSASK[AF][AG][VL]xG[LF][TS][RE]S[LM][AR]x[ED]LAPxG[IV]RVNV[VI] -------------------------------------------------------------------------------- Time 10.13 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 width = 29 sites = 33 llr = 1109 E-value = 9.6e-161 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A :14::::531:::1516:21322:51111 pos.-specific C :::::::1::::::::1:::::::::::: probability D ::::::::1:::::1:::1:::1::1::: matrix E ::::::::::::::2::11::22:::::: F :::1:::::::::1:::::2::::1::1: G ::::::94218:9:::::1:11:8:1:1: H :::::::::::::1::::1:1:1:::::: I ::124::::::5:::2:1::1:::::1:1 K 61:::::::2:::2:::3:::21:13::: L :::5:::::::3:2:2:2151:1:1:1:4 M :::::::::::::::1::::::::::::: N :1::::::1:::::::::::::1::1::: P 1:::::::::::::::::::::::::::: Q 1::::::::1:::::::::::11:::::: R 11:::::::2:::2:::21::11::1::: S :::::::123::::1:1::::11:1111: T :1:::9:::11::::2::1::1:::::1: V :4425::1:::1:::12:1:1:::::553 W :::::::::::::::::::::::::1::: Y :::::::::::::::1::::::::1:::: bits 6.7 6.0 5.4 4.7 Relative 4.0 Entropy 3.4 * (48.5 bits) 2.7 *** * * 2.0 * ****** *** * * * 1.3 ****************** * ** *** 0.7 ***************************** 0.0 ----------------------------- Multilevel KVALVTGAASGIGKATAKxLAAEGAKVVL consensus VII GG L R I F K V sequence S -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ----------------------------- HDE_CANTR 323 6.11e-23 SGAPTVSLKD KVVLITGAGAGLGKEYAKWFAKYGAKVVV NDFKDATKTV DHII_HUMAN 35 8.59e-22 EEFRPEMLQG KKVIVTGASKGIGREMAYHLAKMGAHVVV TARSKETLQK YINL_LISMO 6 9.87e-22 MTIKN KVIIITGASSGIGKATALLLAEKGAKLVL AARRVEKLEK BUDC_KLETE 3 6.81e-20 MQ KVALVTGAGQGIGKAIALRLVKDGFAVAI ADYNDATATA HDHA_ECOLI 12 7.67e-20 FNSDNLRLDG KCAIITGAGAGIGKEIAITFATAGASVVV SDINADAANH RIDH_KLEAE 15 1.55e-19 VSSMNTSLSG KVAAITGAASGIGLECARTLLGAGAKVVL IDREGEKLNK ENTA_ECOLI 6 4.83e-19 MDFSG KNVWVTGAGKGIGYATALAFVEAGAKVTG FDQAFTQEQY AP27_MOUSE 8 4.83e-19 MKLNFSG LRALVTGAGKGIGRDTVKALHASGAKVVA VTRTNSDLVS YRTP_BACSU 7 9.36e-19 MQSLQH KTALITGGGRGIGRATALALAKEGVNIGL IGRTSANVEK DHB3_HUMAN 49 2.74e-18 LPKSFLRSMG QWAVITGAGDGIGKAYSFELAKRGLNVVL ISRTLEKLEA DHGB_BACME 8 3.38e-18 MYKDLEG KVVVITGSSTGLGKSMAIRFATEKAKVVV NYRSKEDEAN PCR_PEA 87 4.61e-18 SSEGKKTLRK GNVVITGASSGLGLATAKALAESGKWHVI MACRDYLKAA DHMA_FLAS1 15 7.71e-18 VSRRPGRLAG KAAIVTGAAGGIGRATVEAYLREGASVVA MDLAPRLAAT BDH_HUMAN 56 2.83e-17 YASAAEPVGS KAVLVTGCDSGFGFSLAKHLHSKGFLVFA GCLMKDKGHD 3BHD_COMTE 7 4.59e-17 TNRLQG KVALVTGGASGVGLEVVKLLLGEGAKVAF SDINEAAGQQ BA72_EUBSP 7 5.57e-17 MNLVQD KVTIITGGTRGIGFAAAKIFIDNGAKVSI FGETQEEVDT 2BHD_STREX 7 6.13e-17 MNDLSG KTVIITGGARGLGAEAARQAVAAGARVVL ADVLDEEGAA HMTR_LEIMA 7 8.96e-17 MTAPTV PVALVTGAAKRLGRSIAEGLHAEGYAVCL HYHRSAAEAN FIXR_BRAJA 37 1.30e-16 VNARVDRGEP KVMLLTGASRGIGHATAKLFSEAGWRIIS CARQPFDGER DHB2_HUMAN 83 1.72e-16 SGQELLPVDQ KAVLVTGGDCGLGHALCKYLDELGFTVFA GVLNENGPGA FVT1_HUMAN 33 1.89e-16 ISPKPLALPG AHVVVTGGSSGIGKCIAIECYKQGAFITL VARNEDKLLQ LIGD_PSEPA 7 8.02e-16 MKDFQD QVAFITGGASGAGFGQAKVFGQAGAKIVV ADVRAEAVEK NODG_RHIME 7 2.09e-15 MFELTG RKALVTGASGAIGGAIARVLHAQGAIVGL HGTQIEKLET MAS1_AGRRA 246 8.72e-15 SHWTVEIHQS PVILVSGSNRGVGKAIAEDLIAHGYRLSL GARKVKDLEV DHCA_HUMAN 5 1.12e-14 SSGI HVALVTGGNKGIGLAIVRDLCRLFSGDVV LTARDVTRGQ BPHB_PSEPS 6 8.10e-14 MKLKG EAVLITGGASGLGRALVDRFVAEAKVAVL DKSAERLAEL DHES_HUMAN 3 2.17e-13 AR TVVLITGCSSGIGLHLAVRLASDPSQSFK VYATLRDLKT GUTD_ECOLI 3 3.39e-13 MN QVAVVIGGGQTLGAFLCHGLAAEGYRVAV VDIQSDKAAN RFBB_NEIGO 7 1.08e-12 MQTEGK KNILVTGGAGFIGSAVVRHIIQNTRDSVV NLDKLTYAGN ADH_DROME 7 2.82e-10 SFTLTN KNVIFVAGLGGIGLDTSKELLKRDLKNLV ILDRIENPAA FABI_ECOLI 7 2.85e-09 MGFLSG KRILVTGVASKLSIAYGIAQAMHREGAEL AFTYQNDKLK YURA_MYXXA 66 3.85e-08 APGGRRHRGA RGVDVTKADATLERIRALDAEAGGLDLVV ANAGVGGTTN CSGA_MYXXA 1 7.14e-07 . MRAFATNVCTGPVDVLINNAGVSGLWCAL GDVDYADMAR -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- HDE_CANTR 6.1e-23 322_[2]_555 DHII_HUMAN 8.6e-22 34_[2]_229 YINL_LISMO 9.9e-22 5_[2]_214 BUDC_KLETE 6.8e-20 2_[2]_210 HDHA_ECOLI 7.7e-20 11_[2]_215 RIDH_KLEAE 1.6e-19 14_[2]_206 ENTA_ECOLI 4.8e-19 5_[2]_214 AP27_MOUSE 4.8e-19 7_[2]_208 YRTP_BACSU 9.4e-19 6_[2]_203 DHB3_HUMAN 2.7e-18 48_[2]_233 DHGB_BACME 3.4e-18 7_[2]_226 PCR_PEA 4.6e-18 86_[2]_284 DHMA_FLAS1 7.7e-18 14_[2]_227 BDH_HUMAN 2.8e-17 55_[2]_259 3BHD_COMTE 4.6e-17 6_[2]_218 BA72_EUBSP 5.6e-17 6_[2]_214 2BHD_STREX 6.1e-17 6_[2]_220 HMTR_LEIMA 9e-17 6_[2]_252 FIXR_BRAJA 1.3e-16 36_[2]_213 DHB2_HUMAN 1.7e-16 82_[2]_276 FVT1_HUMAN 1.9e-16 32_[2]_271 LIGD_PSEPA 8e-16 6_[2]_270 NODG_RHIME 2.1e-15 6_[2]_210 MAS1_AGRRA 8.7e-15 245_[2]_202 DHCA_HUMAN 1.1e-14 4_[2]_243 BPHB_PSEPS 8.1e-14 5_[2]_241 DHES_HUMAN 2.2e-13 2_[2]_296 GUTD_ECOLI 3.4e-13 2_[2]_228 RFBB_NEIGO 1.1e-12 6_[2]_311 ADH_DROME 2.8e-10 6_[2]_220 FABI_ECOLI 2.8e-09 6_[2]_227 YURA_MYXXA 3.8e-08 65_[2]_164 CSGA_MYXXA 7.1e-07 [2]_137 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=29 seqs=33 HDE_CANTR ( 323) KVVLITGAGAGLGKEYAKWFAKYGAKVVV 1 DHII_HUMAN ( 35) KKVIVTGASKGIGREMAYHLAKMGAHVVV 1 YINL_LISMO ( 6) KVIIITGASSGIGKATALLLAEKGAKLVL 1 BUDC_KLETE ( 3) KVALVTGAGQGIGKAIALRLVKDGFAVAI 1 HDHA_ECOLI ( 12) KCAIITGAGAGIGKEIAITFATAGASVVV 1 RIDH_KLEAE ( 15) KVAAITGAASGIGLECARTLLGAGAKVVL 1 ENTA_ECOLI ( 6) KNVWVTGAGKGIGYATALAFVEAGAKVTG 1 AP27_MOUSE ( 8) LRALVTGAGKGIGRDTVKALHASGAKVVA 1 YRTP_BACSU ( 7) KTALITGGGRGIGRATALALAKEGVNIGL 1 DHB3_HUMAN ( 49) QWAVITGAGDGIGKAYSFELAKRGLNVVL 1 DHGB_BACME ( 8) KVVVITGSSTGLGKSMAIRFATEKAKVVV 1 PCR_PEA ( 87) GNVVITGASSGLGLATAKALAESGKWHVI 1 DHMA_FLAS1 ( 15) KAAIVTGAAGGIGRATVEAYLREGASVVA 1 BDH_HUMAN ( 56) KAVLVTGCDSGFGFSLAKHLHSKGFLVFA 1 3BHD_COMTE ( 7) KVALVTGGASGVGLEVVKLLLGEGAKVAF 1 BA72_EUBSP ( 7) KVTIITGGTRGIGFAAAKIFIDNGAKVSI 1 2BHD_STREX ( 7) KTVIITGGARGLGAEAARQAVAAGARVVL 1 HMTR_LEIMA ( 7) PVALVTGAAKRLGRSIAEGLHAEGYAVCL 1 FIXR_BRAJA ( 37) KVMLLTGASRGIGHATAKLFSEAGWRIIS 1 DHB2_HUMAN ( 83) KAVLVTGGDCGLGHALCKYLDELGFTVFA 1 FVT1_HUMAN ( 33) AHVVVTGGSSGIGKCIAIECYKQGAFITL 1 LIGD_PSEPA ( 7) QVAFITGGASGAGFGQAKVFGQAGAKIVV 1 NODG_RHIME ( 7) RKALVTGASGAIGGAIARVLHAQGAIVGL 1 MAS1_AGRRA ( 246) PVILVSGSNRGVGKAIAEDLIAHGYRLSL 1 DHCA_HUMAN ( 5) HVALVTGGNKGIGLAIVRDLCRLFSGDVV 1 BPHB_PSEPS ( 6) EAVLITGGASGLGRALVDRFVAEAKVAVL 1 DHES_HUMAN ( 3) TVVLITGCSSGIGLHLAVRLASDPSQSFK 1 GUTD_ECOLI ( 3) QVAVVIGGGQTLGAFLCHGLAAEGYRVAV 1 RFBB_NEIGO ( 7) KNILVTGGAGFIGSAVVRHIIQNTRDSVV 1 ADH_DROME ( 7) KNVIFVAGLGGIGLDTSKELLKRDLKNLV 1 FABI_ECOLI ( 7) KRILVTGVASKLSIAYGIAQAMHREGAEL 1 YURA_MYXXA ( 66) RGVDVTKADATLERIRALDAEAGGLDLVV 1 CSGA_MYXXA ( 1) MRAFATNVCTGPVDVLINNAGVSGLWCAL 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 20 w= 29 n= 9072 bayes= 8.09755 E= 9.6e-161 -144 -324 -214 -30 -362 -151 75 -366 324 -150 5 -176 41 159 36 -192 -61 -358 -336 -285 4 111 -244 -174 -318 -153 71 -277 38 -303 -249 142 -319 -124 79 -211 12 212 142 -278 184 -336 -698 -644 -426 -685 -583 121 -625 -341 17 -604 -625 -579 -642 -554 -86 223 -541 -505 -166 -213 -95 -431 65 -485 -320 175 -400 235 -158 -395 -418 -328 -391 -339 -271 79 144 -278 -183 -360 -736 -694 -27 -753 -669 277 -681 -131 -362 -659 -674 -647 -712 -633 -456 260 -606 -561 -390 -252 -435 -464 -435 -535 -367 -108 -378 -461 -321 -260 -439 -320 -392 -27 390 -151 -408 -456 -204 -337 -316 -378 -487 331 -341 -506 -141 -550 -452 -92 -427 -375 -365 -296 -413 -492 -378 -430 202 229 -657 -649 -614 197 -575 -627 -664 -641 -566 -533 -494 -531 -613 5 -376 -46 -590 -635 124 125 85 -329 -517 135 -306 -527 -332 -161 -470 66 -435 -292 -392 187 -76 -488 -501 -451 -30 108 -48 -140 -359 22 -152 -364 148 -350 -283 -172 -299 112 146 204 13 -356 -334 -282 -204 -337 -316 -378 -112 323 -341 -505 -141 -549 -452 -272 -427 -375 -136 -296 -74 -492 -378 -430 -204 -278 -502 -471 -49 -547 -405 331 -433 136 -167 -427 -90 -394 -456 -399 -323 12 -351 -334 -325 -337 -317 -151 -487 331 -342 -506 -361 -550 -452 -273 -427 -376 -365 -144 -412 -220 -379 -431 -76 -307 -49 -145 109 -150 159 -92 206 76 -270 -177 -301 -98 190 -62 -211 -335 -327 7 245 85 -61 76 -96 -160 -13 -141 -318 -320 -259 -331 -424 -288 -334 22 -233 -124 -310 -352 -79 126 -495 -417 -229 -460 -301 182 -384 95 114 -373 -406 -2 -75 -314 194 -15 -269 160 263 159 -395 -348 -326 -159 -332 -142 -349 -326 -265 -353 -438 -318 -354 -10 -239 38 -315 -364 -270 -310 -49 76 -38 -361 75 86 236 51 -273 -16 -299 -96 145 -189 -211 -137 -328 6 55 -317 75 77 -354 -68 212 -96 -120 -18 -278 -14 -296 44 117 -186 13 -57 140 6 -48 109 -528 -448 245 -512 -337 -47 -418 257 -149 -419 -432 -15 -403 -367 -300 -225 -293 2 149 122 -87 -90 -239 -71 249 71 -337 39 -179 -344 -396 -284 -351 -89 -243 56 -274 12 93 -318 -47 137 -355 -68 -150 -360 189 -347 5 -170 -295 112 34 6 13 -140 -331 -279 55 -318 27 179 -355 -150 159 -360 46 -69 5 59 -295 112 34 51 -209 -352 -331 6 -204 -337 -127 -378 -113 321 -341 -505 -141 -549 -452 -272 -122 -375 -136 -296 -161 -492 -378 -430 196 -180 -330 -78 106 -367 -238 -218 11 24 -211 -275 -366 -206 -71 -6 -232 -102 135 145 -75 -318 27 -137 -40 -68 75 -97 236 -150 -279 59 -295 44 117 6 -59 -140 237 -279 -115 27 -188 -332 -282 -444 -54 60 -339 -97 -226 -162 -322 -310 -314 -128 -177 303 -341 -382 -24 87 -419 -130 75 -116 -283 -16 -360 -127 -194 -363 -359 -314 -344 -55 -19 271 -299 -305 6 -192 -496 -418 -11 -160 -302 78 -81 186 -170 -374 -406 -320 -380 -94 -247 176 -269 -259 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 20 w= 29 nsites= 33 E= 9.6e-161 0.030303 0.000000 0.000000 0.030303 0.000000 0.030303 0.030303 0.000000 0.575758 0.030303 0.030303 0.000000 0.060606 0.090909 0.060606 0.000000 0.030303 0.000000 0.000000 0.000000 0.121212 0.030303 0.000000 0.000000 0.000000 0.030303 0.030303 0.000000 0.060606 0.000000 0.000000 0.121212 0.000000 0.000000 0.090909 0.000000 0.060606 0.424242 0.030303 0.000000 0.424242 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.121212 0.000000 0.000000 0.030303 0.000000 0.000000 0.000000 0.000000 0.000000 0.030303 0.393939 0.000000 0.000000 0.030303 0.000000 0.030303 0.000000 0.060606 0.000000 0.000000 0.212121 0.000000 0.484848 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.151515 0.030303 0.000000 0.030303 0.000000 0.000000 0.000000 0.030303 0.000000 0.000000 0.393939 0.000000 0.030303 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.515152 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.030303 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.030303 0.909091 0.030303 0.000000 0.000000 0.030303 0.000000 0.000000 0.000000 0.000000 0.909091 0.000000 0.000000 0.030303 0.000000 0.000000 0.030303 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.454545 0.060606 0.000000 0.000000 0.000000 0.363636 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.060606 0.000000 0.060606 0.000000 0.000000 0.272727 0.030303 0.090909 0.000000 0.000000 0.242424 0.000000 0.000000 0.000000 0.030303 0.000000 0.060606 0.000000 0.000000 0.000000 0.242424 0.030303 0.000000 0.000000 0.000000 0.090909 0.030303 0.030303 0.000000 0.000000 0.121212 0.000000 0.000000 0.151515 0.000000 0.000000 0.000000 0.000000 0.060606 0.151515 0.303030 0.060606 0.000000 0.000000 0.000000 0.030303 0.000000 0.000000 0.000000 0.030303 0.818182 0.000000 0.000000 0.030303 0.000000 0.000000 0.000000 0.000000 0.000000 0.030303 0.000000 0.060606 0.000000 0.000000 0.000000 0.030303 0.000000 0.000000 0.000000 0.030303 0.000000 0.000000 0.545455 0.000000 0.303030 0.000000 0.000000 0.030303 0.000000 0.000000 0.000000 0.000000 0.060606 0.000000 0.000000 0.000000 0.000000 0.000000 0.030303 0.000000 0.909091 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.030303 0.000000 0.030303 0.000000 0.000000 0.060606 0.000000 0.030303 0.000000 0.090909 0.030303 0.060606 0.030303 0.242424 0.181818 0.000000 0.000000 0.000000 0.000000 0.212121 0.030303 0.000000 0.000000 0.000000 0.030303 0.484848 0.030303 0.060606 0.181818 0.030303 0.030303 0.030303 0.030303 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.090909 0.000000 0.030303 0.000000 0.000000 0.060606 0.030303 0.000000 0.000000 0.000000 0.000000 0.000000 0.212121 0.000000 0.181818 0.060606 0.000000 0.000000 0.030303 0.030303 0.000000 0.242424 0.060606 0.000000 0.090909 0.636364 0.060606 0.000000 0.000000 0.000000 0.030303 0.000000 0.030303 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.060606 0.000000 0.181818 0.000000 0.000000 0.000000 0.000000 0.030303 0.090909 0.030303 0.000000 0.030303 0.121212 0.303030 0.151515 0.000000 0.030303 0.000000 0.000000 0.151515 0.000000 0.000000 0.030303 0.000000 0.030303 0.181818 0.000000 0.090909 0.090909 0.000000 0.060606 0.090909 0.030303 0.000000 0.090909 0.000000 0.030303 0.000000 0.030303 0.121212 0.000000 0.060606 0.060606 0.030303 0.030303 0.090909 0.030303 0.000000 0.000000 0.242424 0.000000 0.000000 0.030303 0.000000 0.545455 0.000000 0.000000 0.000000 0.030303 0.000000 0.000000 0.000000 0.000000 0.000000 0.030303 0.333333 0.030303 0.030303 0.030303 0.000000 0.060606 0.121212 0.090909 0.000000 0.121212 0.000000 0.000000 0.000000 0.000000 0.000000 0.030303 0.000000 0.121212 0.000000 0.030303 0.242424 0.000000 0.030303 0.151515 0.000000 0.060606 0.000000 0.000000 0.212121 0.000000 0.030303 0.000000 0.000000 0.060606 0.060606 0.060606 0.060606 0.030303 0.000000 0.000000 0.181818 0.000000 0.060606 0.212121 0.000000 0.030303 0.060606 0.000000 0.060606 0.060606 0.030303 0.060606 0.000000 0.060606 0.060606 0.090909 0.000000 0.000000 0.000000 0.030303 0.030303 0.000000 0.030303 0.000000 0.030303 0.787879 0.000000 0.000000 0.030303 0.000000 0.000000 0.000000 0.030303 0.000000 0.030303 0.000000 0.030303 0.000000 0.000000 0.000000 0.454545 0.000000 0.000000 0.030303 0.090909 0.000000 0.000000 0.000000 0.060606 0.121212 0.000000 0.000000 0.000000 0.000000 0.030303 0.060606 0.000000 0.030303 0.030303 0.090909 0.060606 0.000000 0.060606 0.000000 0.030303 0.060606 0.030303 0.030303 0.303030 0.030303 0.000000 0.060606 0.000000 0.030303 0.121212 0.060606 0.030303 0.030303 0.060606 0.000000 0.060606 0.030303 0.030303 0.000000 0.000000 0.000000 0.030303 0.121212 0.000000 0.090909 0.000000 0.030303 0.000000 0.000000 0.000000 0.060606 0.000000 0.545455 0.000000 0.000000 0.121212 0.030303 0.000000 0.030303 0.090909 0.060606 0.000000 0.030303 0.000000 0.030303 0.000000 0.000000 0.000000 0.000000 0.000000 0.060606 0.060606 0.484848 0.000000 0.000000 0.121212 0.000000 0.000000 0.000000 0.030303 0.030303 0.000000 0.090909 0.030303 0.363636 0.000000 0.000000 0.000000 0.000000 0.000000 0.030303 0.000000 0.303030 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- KV[AV][LI][VI]TG[AG][AGS]SG[IL]G[KR]A[TI]AKx[LF]A[AK]EGAKVV[LV] -------------------------------------------------------------------------------- Time 18.80 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 2BHD_STREX 2.28e-28 6_[2(6.13e-17)]_116_[1(1.05e-18)]_75 3BHD_COMTE 1.13e-24 6_[2(4.59e-17)]_115_[1(8.09e-15)]_74 ADH_DROME 3.17e-15 6_[2(2.82e-10)]_116_[1(5.74e-12)]_75 AP27_MOUSE 1.27e-33 7_[2(4.83e-19)]_112_[1(6.97e-22)]_67 BA72_EUBSP 4.12e-26 6_[2(5.57e-17)]_121_[1(2.38e-16)]_64 BDH_HUMAN 1.56e-26 55_[2(2.83e-17)]_123_[1(8.60e-17)]_107 BPHB_PSEPS 4.63e-19 5_[2(8.10e-14)]_118_[1(1.99e-12)]_94 BUDC_KLETE 9.67e-34 2_[2(6.81e-20)]_120_[1(3.84e-21)]_61 DHES_HUMAN 1.54e-22 2_[2(2.17e-13)]_50_[2(9.48e-05)]_44_[1(1.44e-16)]_144 DHGB_BACME 9.81e-31 7_[2(3.38e-18)]_123_[1(7.13e-20)]_74 DHII_HUMAN 7.97e-30 34_[2(8.59e-22)]_119_[1(1.84e-15)]_81 DHMA_FLAS1 1.83e-28 14_[2(7.71e-18)]_121_[1(5.86e-18)]_77 ENTA_ECOLI 2.86e-27 5_[2(4.83e-19)]_109_[1(1.84e-15)]_76 FIXR_BRAJA 3.97e-30 36_[2(1.30e-16)]_123_[1(6.66e-21)]_61 GUTD_ECOLI 4.48e-25 2_[2(3.39e-13)]_122_[1(4.04e-19)]_77 HDE_CANTR 3.35e-32 8_[2(4.61e-18)]_125_[1(4.12e-13)]_131_[2(6.11e-23)]_115_[1(9.13e-18)]_411 HDHA_ECOLI 3.52e-31 11_[2(7.67e-20)]_74_[1(4.12e-05)]_15_[1(1.18e-18)]_68 LIGD_PSEPA 5.00e-24 6_[2(8.02e-16)]_121_[1(1.38e-15)]_120 NODG_RHIME 7.67e-30 6_[2(2.09e-15)]_116_[1(1.08e-21)]_65 RIDH_KLEAE 6.22e-29 14_[2(1.55e-19)]_116_[1(1.17e-16)]_61 YINL_LISMO 1.11e-28 5_[2(9.87e-22)]_119_[1(3.35e-14)]_66 YRTP_BACSU 5.30e-34 6_[2(9.36e-19)]_119_[1(1.57e-22)]_55 CSGA_MYXXA 8.09e-13 [2(7.14e-07)]_58_[1(1.84e-12)]_50 DHB2_HUMAN 3.48e-27 82_[2(1.72e-16)]_120_[1(2.37e-18)]_127 DHB3_HUMAN 1.32e-25 48_[2(2.74e-18)]_120_[1(9.70e-15)]_84 DHCA_HUMAN 1.29e-17 4_[2(1.12e-14)]_159_[1(4.30e-10)]_55 FABI_ECOLI 2.56e-14 6_[2(2.85e-09)]_123_[1(4.59e-12)]_75 FVT1_HUMAN 3.36e-26 32_[2(1.89e-16)]_124_[1(3.01e-17)]_118 HMTR_LEIMA 1.32e-28 6_[2(8.96e-17)]_157_[1(3.17e-19)]_66 MAS1_AGRRA 3.85e-15 245_[2(8.72e-15)]_74_[1(5.81e-08)]_99 PCR_PEA 7.86e-19 25_[1(2.66e-08)]_32_[2(4.61e-18)]_284 RFBB_NEIGO 8.85e-20 6_[2(1.08e-12)]_129_[1(1.66e-14)]_153 YURA_MYXXA 5.81e-20 65_[2(3.85e-08)]_65_[1(5.80e-19)]_70 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 2 reached. ******************************************************************************** CPU: tlb-sayonara.imb.uq.edu.au ********************************************************************************