******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.0.0 (Release date: 2008-07-12 05:23:09 +1000 (Sat, 12 Jul 2008)) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /home/t.bailey/MEME/SVNROOT/trunk/scripts/../tests/common/adh.s ALPHABET= ACDEFGHIKLMNPQRSTVWY Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ 2BHD_STREX 1.0000 255 3BHD_COMTE 1.0000 253 ADH_DROME 1.0000 255 AP27_MOUSE 1.0000 244 BA72_EUBSP 1.0000 249 BDH_HUMAN 1.0000 343 BPHB_PSEPS 1.0000 275 BUDC_KLETE 1.0000 241 DHES_HUMAN 1.0000 327 DHGB_BACME 1.0000 262 DHII_HUMAN 1.0000 292 DHMA_FLAS1 1.0000 270 ENTA_ECOLI 1.0000 248 FIXR_BRAJA 1.0000 278 GUTD_ECOLI 1.0000 259 HDE_CANTR 1.0000 906 HDHA_ECOLI 1.0000 255 LIGD_PSEPA 1.0000 305 NODG_RHIME 1.0000 245 RIDH_KLEAE 1.0000 249 YINL_LISMO 1.0000 248 YRTP_BACSU 1.0000 238 CSGA_MYXXA 1.0000 166 DHB2_HUMAN 1.0000 387 DHB3_HUMAN 1.0000 310 DHCA_HUMAN 1.0000 276 FABI_ECOLI 1.0000 262 FVT1_HUMAN 1.0000 332 HMTR_LEIMA 1.0000 287 MAS1_AGRRA 1.0000 476 PCR_PEA 1.0000 399 RFBB_NEIGO 1.0000 346 YURA_MYXXA 1.0000 258 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /home/t.bailey/MEME/SVNROOT/trunk/scripts/../tests/common/adh.s -text -mod zoops -protein -nostatus -nmotifs 2 -minw 8 model: mod= zoops nmotifs= 2 evt= inf object function= E-value of product of p-values width: minw= 8 maxw= 50 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 33 wnsites= 0.8 theta: prob= 1 spmap= pam spfuzz= 120 global: substring= yes branching= no wbranch= no em: prior= megap b= 49980 maxiter= 50 distance= 1e-05 data: n= 9996 N= 33 sample: seed= 0 seqfrac= 1 Dirichlet mixture priors file: prior30.plib Letter frequencies in dataset: A 0.111 C 0.012 D 0.050 E 0.055 F 0.036 G 0.090 H 0.018 I 0.057 K 0.052 L 0.092 M 0.027 N 0.041 P 0.041 Q 0.029 R 0.049 S 0.064 T 0.057 V 0.083 W 0.010 Y 0.027 Background letter frequencies (from dataset with add-one prior applied): A 0.111 C 0.012 D 0.050 E 0.055 F 0.036 G 0.090 H 0.018 I 0.057 K 0.052 L 0.092 M 0.027 N 0.041 P 0.041 Q 0.029 R 0.049 S 0.064 T 0.057 V 0.083 W 0.010 Y 0.027 ******************************************************************************** ******************************************************************************** MOTIF 1 width = 21 sites = 31 llr = 887 E-value = 7.1e-135 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A ::14::::531:::1516:2: pos.-specific C ::::::::1::::::::1::: probability D 1::::::::1:::::1:::1: matrix E :::::::::::::::2::11: F ::::::::::::::1:::::3 G 5::::::a4318:a:::::1: H ::::::::::::::1::::1: I :::124::::::6:::2:1:: K 161:::::::2:::3:::3:: L ::::5:::::::3:2:2:116 M ::::::::::::::::1:::: N 1:1::::::1::::::::::: P :1::::::::::::::::::: Q 11::::::::1:::::::::: R ::1:::::::2:::2:::21: S 1:::::::133::::1:1::: T ::1:::9:::::::::3::1: V ::5425::::::1:::12:1: W ::::::::::::::::::::: Y ::::::::::::::::1:::: bits 6.7 6.0 5.4 4.7 Relative 4.0 Entropy 3.4 ** * (41.3 bits) 2.7 *** * * 2.0 * ****** *** * * 1.3 ******************* * 0.7 ********************* 0.0 --------------------- Multilevel GKVALVTGAASGIGKATAKxL consensus VII GG L I F sequence S -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- BUDC_KLETE 2 5.79e-18 M QKVALVTGAGQGIGKAIALRL VKDGFAVAIA YINL_LISMO 5 1.50e-17 MTIK NKVIIITGASSGIGKATALLL AEKGAKLVLA DHII_HUMAN 34 6.51e-17 NEEFRPEMLQ GKKVIVTGASKGIGREMAYHL AKMGAHVVVT YRTP_BACSU 6 1.68e-16 MQSLQ HKTALITGGGRGIGRATALAL AKEGVNIGLI HDE_CANTR 322 1.92e-16 ASGAPTVSLK DKVVLITGAGAGLGKEYAKWF AKYGAKVVVN ENTA_ECOLI 5 2.19e-16 MDFS GKNVWVTGAGKGIGYATALAF VEAGAKVTGF HDHA_ECOLI 11 1.10e-15 MFNSDNLRLD GKCAIITGAGAGIGKEIAITF ATAGASVVVS RIDH_KLEAE 14 2.47e-15 SVSSMNTSLS GKVAAITGAASGIGLECARTL LGAGAKVVLI DHB2_HUMAN 82 3.09e-15 LSGQELLPVD QKAVLVTGGDCGLGHALCKYL DELGFTVFAG FIXR_BRAJA 36 4.81e-15 AVNARVDRGE PKVMLLTGASRGIGHATAKLF SEAGWRIISC BDH_HUMAN 55 1.02e-14 TYASAAEPVG SKAVLVTGCDSGFGFSLAKHL HSKGFLVFAG 3BHD_COMTE 6 1.40e-14 TNRLQ GKVALVTGGASGVGLEVVKLL LGEGAKVAFS PCR_PEA 86 1.55e-14 SSSEGKKTLR KGNVVITGASSGLGLATAKAL AESGKWHVIM DHCA_HUMAN 4 1.91e-14 SSG IHVALVTGGNKGIGLAIVRDL CRLFSGDVVL DHGB_BACME 7 1.91e-14 MYKDLE GKVVVITGSSTGLGKSMAIRF ATEKAKVVVN DHMA_FLAS1 14 2.59e-14 GVSRRPGRLA GKAAIVTGAAGGIGRATVEAY LREGASVVAM FVT1_HUMAN 32 2.86e-14 LISPKPLALP GAHVVVTGGSSGIGKCIAIEC YKQGAFITLV DHB3_HUMAN 48 4.26e-14 VLPKSFLRSM GQWAVITGAGDGIGKAYSFEL AKRGLNVVLI AP27_MOUSE 7 5.19e-14 MKLNFS GLRALVTGAGKGIGRDTVKAL HASGAKVVAV BA72_EUBSP 6 5.72e-14 MNLVQ DKVTIITGGTRGIGFAAAKIF IDNGAKVSIF DHES_HUMAN 2 6.94e-14 A RTVVLITGCSSGIGLHLAVRL ASDPSQSFKV BPHB_PSEPS 5 1.12e-13 MKLK GEAVLITGGASGLGRALVDRF VAEAKVAVLD 2BHD_STREX 6 2.25e-12 MNDLS GKTVIITGGARGLGAEAARQA VAAGARVVLA MAS1_AGRRA 245 3.13e-12 FSHWTVEIHQ SPVILVSGSNRGVGKAIAEDL IAHGYRLSLG NODG_RHIME 6 3.68e-12 MFELT GRKALVTGASGAIGGAIARVL HAQGAIVGLH RFBB_NEIGO 6 5.96e-12 MQTEG KKNILVTGGAGFIGSAVVRHI IQNTRDSVVN HMTR_LEIMA 6 6.98e-12 MTAPT VPVALVTGAAKRLGRSIAEGL HAEGYAVCLH LIGD_PSEPA 6 6.98e-12 MKDFQ DQVAFITGGASGAGFGQAKVF GQAGAKIVVA ADH_DROME 6 8.02e-10 SFTLT NKNVIFVAGLGGIGLDTSKEL LKRDLKNLVI GUTD_ECOLI 2 1.44e-09 M NQVAVVIGGGQTLGAFLCHGL AAEGYRVAVV FABI_ECOLI 6 2.70e-09 MGFLS GKRILVTGVASKLSIAYGIAQ AMHREGAELA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- BUDC_KLETE 5.8e-18 1_[1]_219 YINL_LISMO 1.5e-17 4_[1]_223 DHII_HUMAN 6.5e-17 33_[1]_238 YRTP_BACSU 1.7e-16 5_[1]_212 HDE_CANTR 1.9e-16 321_[1]_564 ENTA_ECOLI 2.2e-16 4_[1]_223 HDHA_ECOLI 1.1e-15 10_[1]_224 RIDH_KLEAE 2.5e-15 13_[1]_215 DHB2_HUMAN 3.1e-15 81_[1]_285 FIXR_BRAJA 4.8e-15 35_[1]_222 BDH_HUMAN 1e-14 54_[1]_268 3BHD_COMTE 1.4e-14 5_[1]_227 PCR_PEA 1.6e-14 85_[1]_293 DHCA_HUMAN 1.9e-14 3_[1]_252 DHGB_BACME 1.9e-14 6_[1]_235 DHMA_FLAS1 2.6e-14 13_[1]_236 FVT1_HUMAN 2.9e-14 31_[1]_280 DHB3_HUMAN 4.3e-14 47_[1]_242 AP27_MOUSE 5.2e-14 6_[1]_217 BA72_EUBSP 5.7e-14 5_[1]_223 DHES_HUMAN 6.9e-14 1_[1]_305 BPHB_PSEPS 1.1e-13 4_[1]_250 2BHD_STREX 2.2e-12 5_[1]_229 MAS1_AGRRA 3.1e-12 244_[1]_211 NODG_RHIME 3.7e-12 5_[1]_219 RFBB_NEIGO 6e-12 5_[1]_320 HMTR_LEIMA 7e-12 5_[1]_261 LIGD_PSEPA 7e-12 5_[1]_279 ADH_DROME 8e-10 5_[1]_229 GUTD_ECOLI 1.4e-09 1_[1]_237 FABI_ECOLI 2.7e-09 5_[1]_236 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=21 seqs=31 BUDC_KLETE ( 2) QKVALVTGAGQGIGKAIALRL 1 YINL_LISMO ( 5) NKVIIITGASSGIGKATALLL 1 DHII_HUMAN ( 34) GKKVIVTGASKGIGREMAYHL 1 YRTP_BACSU ( 6) HKTALITGGGRGIGRATALAL 1 HDE_CANTR ( 322) DKVVLITGAGAGLGKEYAKWF 1 ENTA_ECOLI ( 5) GKNVWVTGAGKGIGYATALAF 1 HDHA_ECOLI ( 11) GKCAIITGAGAGIGKEIAITF 1 RIDH_KLEAE ( 14) GKVAAITGAASGIGLECARTL 1 DHB2_HUMAN ( 82) QKAVLVTGGDCGLGHALCKYL 1 FIXR_BRAJA ( 36) PKVMLLTGASRGIGHATAKLF 1 BDH_HUMAN ( 55) SKAVLVTGCDSGFGFSLAKHL 1 3BHD_COMTE ( 6) GKVALVTGGASGVGLEVVKLL 1 PCR_PEA ( 86) KGNVVITGASSGLGLATAKAL 1 DHCA_HUMAN ( 4) IHVALVTGGNKGIGLAIVRDL 1 DHGB_BACME ( 7) GKVVVITGSSTGLGKSMAIRF 1 DHMA_FLAS1 ( 14) GKAAIVTGAAGGIGRATVEAY 1 FVT1_HUMAN ( 32) GAHVVVTGGSSGIGKCIAIEC 1 DHB3_HUMAN ( 48) GQWAVITGAGDGIGKAYSFEL 1 AP27_MOUSE ( 7) GLRALVTGAGKGIGRDTVKAL 1 BA72_EUBSP ( 6) DKVTIITGGTRGIGFAAAKIF 1 DHES_HUMAN ( 2) RTVVLITGCSSGIGLHLAVRL 1 BPHB_PSEPS ( 5) GEAVLITGGASGLGRALVDRF 1 2BHD_STREX ( 6) GKTVIITGGARGLGAEAARQA 1 MAS1_AGRRA ( 245) SPVILVSGSNRGVGKAIAEDL 1 NODG_RHIME ( 6) GRKALVTGASGAIGGAIARVL 1 RFBB_NEIGO ( 6) KKNILVTGGAGFIGSAVVRHI 1 HMTR_LEIMA ( 6) VPVALVTGAAKRLGRSIAEGL 1 LIGD_PSEPA ( 6) DQVAFITGGASGAGFGQAKVF 1 ADH_DROME ( 6) NKNVIFVAGLGGIGLDTSKEL 1 GUTD_ECOLI ( 2) NQVAVVIGGGQTLGAFLCHGL 1 FABI_ECOLI ( 6) GKRILVTGVASKLSIAYGIAQ 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 20 w= 21 n= 9336 bayes= 8.15674 E= 7.1e-135 -262 -312 83 -131 -350 203 82 -90 52 -342 -275 114 -39 119 -30 12 -204 -133 -326 -273 -140 -325 -219 -27 -366 -145 81 -367 333 -144 -287 -179 48 166 -25 -195 -56 -361 -336 -287 10 120 -276 -204 -292 -394 74 -223 39 -273 -226 146 -332 -148 34 -230 17 225 149 -275 182 -323 -682 -626 -410 -667 -559 129 -605 -328 26 -585 -608 -558 -620 -535 -77 220 -518 -485 -172 -283 -590 -510 -8 -568 -398 188 -481 247 -176 -478 -489 -396 -467 -426 -349 88 158 -344 -539 -367 -757 -719 -17 -781 -714 286 -711 -120 -348 -686 -694 -672 -748 -670 -469 260 -614 -574 -384 -246 -429 -457 -428 -528 -361 -102 -371 -454 -315 -253 -432 -313 -386 -21 389 -145 -402 -449 -193 -340 -331 -392 -498 336 -355 -517 -375 -560 -464 -287 -436 -388 -379 -303 -417 -500 -391 -443 201 237 -650 -643 -608 206 -569 -623 -659 -636 -561 -525 -486 -524 -606 14 -368 -132 -584 -629 130 -382 46 -315 -541 144 -279 -578 -331 -155 -518 82 -440 -291 -402 195 -70 -545 -525 -450 -69 115 -40 -134 -353 30 -146 -358 155 -344 -277 -166 -293 119 153 211 -53 -350 -328 -276 -200 -333 -312 -373 -108 325 -337 -501 -136 -545 -447 -268 -422 -370 -132 -291 -157 -488 -373 -426 -194 -333 -573 -550 -31 -633 -500 335 -514 145 -206 -508 -557 -473 -542 -490 -391 7 -420 -408 -336 -346 -335 -396 -502 336 -358 -522 -379 -564 -469 -291 -440 -392 -383 -130 -422 -505 -395 -447 -70 -261 -251 -180 121 -146 166 -66 213 89 -231 -206 -319 -128 177 -64 -216 -272 -304 17 241 97 -30 104 -77 -151 16 -322 -270 -332 -270 -273 -398 -240 -304 34 -234 -223 -320 -344 -71 133 -488 -410 -221 -452 -294 190 -377 80 122 -366 -399 6 -372 -306 202 -7 -261 168 260 189 -432 -387 -365 -148 -367 -352 -389 -366 -304 -382 -447 -351 -391 1 -263 69 -352 -402 -269 -288 -45 81 -28 -363 81 96 243 31 -254 -181 -301 -101 153 -192 -209 -123 -316 15 63 -305 34 83 -342 -61 219 -87 -116 -10 -267 -166 -291 50 124 -180 20 -49 147 13 -192 98 -521 -438 235 -528 -339 -49 -412 274 -117 -426 -421 -24 -390 -382 -316 -230 -292 -9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 20 w= 21 nsites= 31 E= 7.1e-135 0.000000 0.000000 0.096774 0.000000 0.000000 0.451613 0.032258 0.032258 0.064516 0.000000 0.000000 0.096774 0.032258 0.064516 0.032258 0.064516 0.000000 0.032258 0.000000 0.000000 0.032258 0.000000 0.000000 0.032258 0.000000 0.032258 0.032258 0.000000 0.612903 0.032258 0.000000 0.000000 0.064516 0.096774 0.032258 0.000000 0.032258 0.000000 0.000000 0.000000 0.129032 0.032258 0.000000 0.000000 0.000000 0.000000 0.032258 0.000000 0.064516 0.000000 0.000000 0.129032 0.000000 0.000000 0.064516 0.000000 0.064516 0.451613 0.032258 0.000000 0.419355 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.129032 0.000000 0.000000 0.032258 0.000000 0.000000 0.000000 0.000000 0.000000 0.032258 0.387097 0.000000 0.000000 0.032258 0.000000 0.000000 0.000000 0.032258 0.000000 0.000000 0.225806 0.000000 0.516129 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.161290 0.032258 0.000000 0.000000 0.000000 0.000000 0.000000 0.032258 0.000000 0.000000 0.419355 0.000000 0.032258 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.516129 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.032258 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.032258 0.903226 0.032258 0.000000 0.000000 0.032258 0.000000 0.000000 0.000000 0.000000 0.967742 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.451613 0.064516 0.000000 0.000000 0.000000 0.387097 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.064516 0.000000 0.032258 0.000000 0.000000 0.290323 0.000000 0.064516 0.000000 0.000000 0.258065 0.000000 0.000000 0.000000 0.032258 0.000000 0.064516 0.000000 0.000000 0.000000 0.258065 0.032258 0.000000 0.000000 0.000000 0.064516 0.032258 0.032258 0.000000 0.000000 0.129032 0.000000 0.000000 0.161290 0.000000 0.000000 0.000000 0.000000 0.064516 0.161290 0.322581 0.032258 0.000000 0.000000 0.000000 0.032258 0.000000 0.000000 0.000000 0.032258 0.838710 0.000000 0.000000 0.032258 0.000000 0.000000 0.000000 0.000000 0.000000 0.032258 0.000000 0.032258 0.000000 0.000000 0.000000 0.032258 0.000000 0.000000 0.000000 0.032258 0.000000 0.000000 0.580645 0.000000 0.290323 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.064516 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.967742 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.032258 0.000000 0.000000 0.000000 0.000000 0.064516 0.000000 0.000000 0.000000 0.096774 0.032258 0.064516 0.032258 0.258065 0.193548 0.000000 0.000000 0.000000 0.000000 0.193548 0.032258 0.000000 0.000000 0.000000 0.032258 0.516129 0.032258 0.064516 0.193548 0.032258 0.032258 0.032258 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.096774 0.000000 0.000000 0.000000 0.000000 0.064516 0.032258 0.000000 0.000000 0.000000 0.000000 0.000000 0.225806 0.000000 0.161290 0.064516 0.000000 0.000000 0.032258 0.000000 0.000000 0.258065 0.064516 0.000000 0.096774 0.645161 0.064516 0.000000 0.000000 0.000000 0.032258 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.064516 0.000000 0.193548 0.000000 0.000000 0.000000 0.000000 0.032258 0.096774 0.032258 0.000000 0.032258 0.129032 0.322581 0.129032 0.000000 0.000000 0.000000 0.000000 0.161290 0.000000 0.000000 0.032258 0.000000 0.032258 0.193548 0.000000 0.064516 0.096774 0.000000 0.064516 0.096774 0.032258 0.000000 0.096774 0.000000 0.000000 0.000000 0.032258 0.129032 0.000000 0.064516 0.064516 0.032258 0.032258 0.032258 0.032258 0.000000 0.000000 0.258065 0.000000 0.000000 0.032258 0.000000 0.580645 0.000000 0.000000 0.000000 0.032258 0.000000 0.000000 0.000000 0.000000 0.000000 0.032258 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- GKV[AV][LI][VI]TG[AG][AGS]SG[IL]GKA[TI]AKx[LF] -------------------------------------------------------------------------------- Time 34.89 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 width = 29 sites = 31 llr = 1107 E-value = 2.9e-168 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A 23:162:56112:1:215:::4::::::: pos.-specific C :::1::::::::::::::::::::::::: probability D ::::::::::1::::::::2::::::::: matrix E ::::::::::1:::21:::5::11::::: F :::::::31:::3:::::1:::::::::: G :1:2:::13::4:::1:1:::11:5:1:1 H :::::::::::1::1::::::::1::::: I :::::::::11:::::::::1::::5:1: K ::::::a:::1:::2:::1::121::1:: L :::::::::31:6:::5:215::1::::: M ::::1::::1:1:1::2:1:1:::::::: N :1:::::::::1::::::::::::2:1:4 P 11::::::::::::::::::::4:::::: Q ::::::::::::::1::11:::11::::: R ::::::::::1:::3::22::21:1:4:1 S 31:426::1:11:213:::::1:1::::2 T 2::1:2::::1::4:1::::::11::1:1 V 12:::::::41::2:1::1:1::::3161 W :::::::1::::::::::::::::::::: Y ::a:::::::::::::::::2::2::::: bits 6.7 6.0 5.4 4.7 * Relative 4.0 * * Entropy 3.4 * * (51.5 bits) 2.7 * ** * 2.0 * **** *** ** * ** * 1.3 * ******** **** ** ********** 0.7 ***************************** 0.0 ----------------------------- Multilevel SAYSASKAAVxGLTRSLAxELAPxGIRVN consensus A FGL FSE MR D V sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ----------------------------- YRTP_BACSU 153 6.53e-24 TAGQRGAAVT SAYSASKFAVLGLTESLMQEVRKHNIRVS ALTPSTVASD BUDC_KLETE 150 1.90e-22 QAGHVGNPEL AVYSSSKFAVRGLTQTAARDLAPLGITVN GFCPGIVKTP FIXR_BRAJA 187 4.54e-21 AGSRVHPFAG SAYATSKAALASLTRELAHDYAPHGIRVN AIAPGEIRTD NODG_RHIME 150 5.97e-21 VAGAIGNPGQ TNYCASKAGMIGFSKSLAQEIATRNITVN CVAPGFIESA AP27_MOUSE 147 1.74e-20 MVAHVTFPNL ITYSSTKGAMTMLTKAMAMELGPHKIRVN SVNPTVVLTD GUTD_ECOLI 152 1.51e-19 KSGKVGSKHN SGYSAAKFGGVGLTQSLALDLAEYGITVH SLMLGNLLKS DHGB_BACME 158 1.93e-19 HEWKIPWPLF VHYAASKGGMKLMTETLALEYAPKGIRVN NIGPGAINTP HMTR_LEIMA 191 3.97e-19 AMTNQPLLGY TIYTMAKGALEGLTRSAALELAPLQIRVN GVGPGLSVLV 2BHD_STREX 150 5.67e-19 AAGLMGLALT SSYGASKWGVRGLSKLAAVELGTDRIRVN SVHPGMTYTP HDHA_ECOLI 157 1.28e-18 MAAENKNINM TSYASSKAAASHLVRNMAFDLGEKNIRVN GIAPGAILTD FVT1_HUMAN 184 3.54e-18 QAGQLGLFGF TAYSASKFAIRGLAEALQMEVKPYNVYIT VAYPPDTDTP DHB2_HUMAN 230 3.54e-18 MGGGAPMERL ASYGSSKAAVTMFSSVMRLELSKWGIKVA SIQPGGFLTN DHMA_FLAS1 163 3.96e-18 VNSFMAEPEA AAYVAAKGGVAMLTRAMAVDLARHGILVN MIAPGPVDVT HDE_CANTR 465 7.66e-18 TSGIYGNFGQ ANYSSSKAGILGLSKTMAIEGAKNNIKVN IVAPHAETAM YURA_MYXXA 158 1.46e-17 SLAGFRGLPA TRYSASKAFLSTFMESLRVDLRGTGVRVT CIYPGFVKSE RIDH_KLEAE 158 3.39e-17 IAGVVPVIWE PVYTASKFAVQAFVHTTRRQVAQYGVRVG AVLPGPVVTA BDH_HUMAN 206 1.15e-16 MLGRMANPAR SPYCITKFGVEAFSDCLRYEMYPLGVKVS VVEPGNFIAA DHES_HUMAN 153 1.55e-16 VGGLMGLPFN DVYCASKFALEGLCESLAVLLLPFGVHLS LIECGPVHTA DHII_HUMAN 181 2.54e-16 LAGKVAYPMV AAYSASKFALDGFFSSIRKEYSVSRVNVS ITLCVLGLID BA72_EUBSP 155 9.68e-16 VTGIFGSLSG VGYPASKASVIGLTHGLGREIIRKNIRVV GVAPGVVNTD YINL_LISMO 152 2.03e-15 VAGLKAYPGG AVYGATKWAVRDLMEVLRMESAQEGTNIR TATIYPAAIN ENTA_ECOLI 142 3.19e-15 DAAHTPRIGM SAYGASKAALKSLALSVGLELAGSGVRCN VVSPGSTDTD 3BHD_COMTE 149 3.82e-15 VSSWLPIEQY AGYSASKAAVSALTRAAALSCRKQGYAIR VNSIHPDGIY RFBB_NEIGO 163 5.97e-15 FTETTPYAPS SPYSASKAAADHLVRAWQRTYRLPSIVSN CSNNYGPRQF DHB3_HUMAN 196 5.97e-15 GIALFPWPLY SMYSASKAFVCAFSKALQEEYKAKEVIIQ VLTPYAVSTA LIGD_PSEPA 155 6.52e-15 LGGFMGSALA GPYSAAKAASINLMEGYRQGLEKYGIGVS VCTPANIKSN BPHB_PSEPS 151 4.38e-13 NAGFYPNGGG PLYTAAKQAIVGLVRELAFELAPYVRVNG VGPGGMNSDM CSGA_MYXXA 86 1.01e-12 SLAANTDGGA YAYRMSKAALNMAVRSMSTDLRPEGFVTV LLHPGWVQTD FABI_ECOLI 157 1.98e-12 LGAERAIPNY NVMGLAKASLEANVRYMANAMGPEGVRVN AISAGPIRTL ADH_DROME 150 1.98e-12 VTGFNAIYQV PVYSGTKAAVVNFTSSLAKLAPITGVTAY TVNPGITRTT DHCA_HUMAN 191 7.76e-11 GVHQKEGWPS SAYGVTKIGVTVLSRIHARKLSEQRKGDK ILLNACCPGW -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- YRTP_BACSU 6.5e-24 152_[2]_57 BUDC_KLETE 1.9e-22 149_[2]_63 FIXR_BRAJA 4.5e-21 186_[2]_63 NODG_RHIME 6e-21 149_[2]_67 AP27_MOUSE 1.7e-20 146_[2]_69 GUTD_ECOLI 1.5e-19 151_[2]_79 DHGB_BACME 1.9e-19 157_[2]_76 HMTR_LEIMA 4e-19 190_[2]_68 2BHD_STREX 5.7e-19 149_[2]_77 HDHA_ECOLI 1.3e-18 156_[2]_70 FVT1_HUMAN 3.5e-18 183_[2]_120 DHB2_HUMAN 3.5e-18 229_[2]_129 DHMA_FLAS1 4e-18 162_[2]_79 HDE_CANTR 7.7e-18 464_[2]_413 YURA_MYXXA 1.5e-17 157_[2]_72 RIDH_KLEAE 3.4e-17 157_[2]_63 BDH_HUMAN 1.2e-16 205_[2]_109 DHES_HUMAN 1.6e-16 152_[2]_146 DHII_HUMAN 2.5e-16 180_[2]_83 BA72_EUBSP 9.7e-16 154_[2]_66 YINL_LISMO 2e-15 151_[2]_68 ENTA_ECOLI 3.2e-15 141_[2]_78 3BHD_COMTE 3.8e-15 148_[2]_76 RFBB_NEIGO 6e-15 162_[2]_155 DHB3_HUMAN 6e-15 195_[2]_86 LIGD_PSEPA 6.5e-15 154_[2]_122 BPHB_PSEPS 4.4e-13 150_[2]_96 CSGA_MYXXA 1e-12 85_[2]_52 FABI_ECOLI 2e-12 156_[2]_77 ADH_DROME 2e-12 149_[2]_77 DHCA_HUMAN 7.8e-11 190_[2]_57 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=29 seqs=31 YRTP_BACSU ( 153) SAYSASKFAVLGLTESLMQEVRKHNIRVS 1 BUDC_KLETE ( 150) AVYSSSKFAVRGLTQTAARDLAPLGITVN 1 FIXR_BRAJA ( 187) SAYATSKAALASLTRELAHDYAPHGIRVN 1 NODG_RHIME ( 150) TNYCASKAGMIGFSKSLAQEIATRNITVN 1 AP27_MOUSE ( 147) ITYSSTKGAMTMLTKAMAMELGPHKIRVN 1 GUTD_ECOLI ( 152) SGYSAAKFGGVGLTQSLALDLAEYGITVH 1 DHGB_BACME ( 158) VHYAASKGGMKLMTETLALEYAPKGIRVN 1 HMTR_LEIMA ( 191) TIYTMAKGALEGLTRSAALELAPLQIRVN 1 2BHD_STREX ( 150) SSYGASKWGVRGLSKLAAVELGTDRIRVN 1 HDHA_ECOLI ( 157) TSYASSKAAASHLVRNMAFDLGEKNIRVN 1 FVT1_HUMAN ( 184) TAYSASKFAIRGLAEALQMEVKPYNVYIT 1 DHB2_HUMAN ( 230) ASYGSSKAAVTMFSSVMRLELSKWGIKVA 1 DHMA_FLAS1 ( 163) AAYVAAKGGVAMLTRAMAVDLARHGILVN 1 HDE_CANTR ( 465) ANYSSSKAGILGLSKTMAIEGAKNNIKVN 1 YURA_MYXXA ( 158) TRYSASKAFLSTFMESLRVDLRGTGVRVT 1 RIDH_KLEAE ( 158) PVYTASKFAVQAFVHTTRRQVAQYGVRVG 1 BDH_HUMAN ( 206) SPYCITKFGVEAFSDCLRYEMYPLGVKVS 1 DHES_HUMAN ( 153) DVYCASKFALEGLCESLAVLLLPFGVHLS 1 DHII_HUMAN ( 181) AAYSASKFALDGFFSSIRKEYSVSRVNVS 1 BA72_EUBSP ( 155) VGYPASKASVIGLTHGLGREIIRKNIRVV 1 YINL_LISMO ( 152) AVYGATKWAVRDLMEVLRMESAQEGTNIR 1 ENTA_ECOLI ( 142) SAYGASKAALKSLALSVGLELAGSGVRCN 1 3BHD_COMTE ( 149) AGYSASKAAVSALTRAAALSCRKQGYAIR 1 RFBB_NEIGO ( 163) SPYSASKAAADHLVRAWQRTYRLPSIVSN 1 DHB3_HUMAN ( 196) SMYSASKAFVCAFSKALQEEYKAKEVIIQ 1 LIGD_PSEPA ( 155) GPYSAAKAASINLMEGYRQGLEKYGIGVS 1 BPHB_PSEPS ( 151) PLYTAAKQAIVGLVRELAFELAPYVRVNG 1 CSGA_MYXXA ( 86) YAYRMSKAALNMAVRSMSTDLRPEGFVTV 1 FABI_ECOLI ( 157) NVMGLAKASLEANVRYMANAMGPEGVRVN 1 ADH_DROME ( 150) PVYSGTKAAVVNFTSSLAKLAPITGVTAY 1 DHCA_HUMAN ( 191) SAYGVTKIGVTVLSRIHARKLSEQRKGDK 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 20 w= 29 n= 9072 bayes= 8.11521 E= 2.9e-168 82 -267 -51 -166 -316 -147 -170 -77 -147 -304 -247 -16 100 -117 -205 204 136 -44 -313 12 106 -217 -312 -241 -257 -8 74 -47 -220 -106 30 56 104 -183 -52 52 -55 109 -282 -259 -735 -508 -715 -725 -189 -735 -324 -566 -670 -508 22 -574 -668 -545 -619 -626 -645 -620 -234 512 -12 287 -539 -525 -527 100 -469 -528 -499 -549 -480 -414 -40 -435 -69 273 80 -136 -513 -524 261 -60 -386 -339 -316 -156 -322 -140 -339 -189 30 -344 -432 -309 -345 71 -113 -119 -305 -354 74 -256 -555 -578 -543 -416 -494 -568 -537 -583 -505 -406 -453 -469 -517 331 147 -495 -522 -540 -572 -446 -600 -565 -643 -626 -470 -557 423 -622 -560 -486 -552 -478 -203 -565 -529 -649 -497 -576 204 -240 -536 -479 272 41 -340 -59 -449 -310 -275 -426 -459 7 -446 -310 -315 -287 261 -219 244 -260 -617 -607 76 146 -544 -586 -620 -599 -528 -507 -484 -506 -581 13 -360 -465 -556 -597 -72 -187 -492 -414 -225 -153 -299 86 -381 139 173 -370 -403 -317 -377 -87 -243 220 -266 -256 -68 114 34 117 -347 -350 -143 53 53 -62 -272 -7 -288 51 124 58 68 2 -324 -271 40 -276 -47 -161 -314 184 166 -284 -143 -130 199 63 -308 -113 -201 9 -54 -118 -311 -270 -199 -336 -604 -519 249 -629 -422 -198 -495 285 35 -68 -491 -386 -464 -490 -415 -298 -347 -363 -82 123 -470 -437 -23 -472 -328 -211 -385 -272 161 -319 -417 -322 -388 163 270 104 -315 -316 -294 -341 -45 189 -384 -381 168 -382 159 -145 -302 -194 -320 119 250 56 -234 -376 -351 -303 65 125 -331 15 -254 -64 -231 -46 -239 -106 -192 -31 -353 -201 -279 218 108 -23 -280 18 10 -189 -490 -411 -219 -458 66 -27 -379 220 284 -370 -399 -311 -372 -312 -62 -73 155 20 227 -245 -435 -371 -483 -54 -343 -468 -259 -471 12 -364 -445 158 203 -69 -323 -393 -450 -456 -276 -250 -256 -41 67 -380 78 -62 41 90 163 -19 -320 161 152 -214 -54 51 -297 17 -155 -448 205 312 -480 -150 -254 -458 -38 -63 -382 -264 -367 39 -291 -81 -72 -440 -453 -396 -150 129 -489 -411 -219 -157 -297 37 -378 228 119 -370 -399 -311 -372 -91 -245 31 -263 234 158 -294 -205 -23 -345 28 -147 -90 51 -142 -270 -168 -40 -88 151 57 -204 -335 -323 12 -135 -311 -204 83 -349 -62 -146 -90 154 -143 -274 -167 285 118 40 -181 19 -133 -326 -275 -261 -309 -40 83 -29 -351 257 -352 127 -11 -272 -8 -39 119 -30 12 20 -344 147 230 -348 -374 -257 -61 -453 255 -223 -454 -30 -444 -379 200 -382 21 83 -82 -303 -151 -397 -366 -366 -246 -411 -397 -111 -492 -359 345 -183 -76 -102 -352 -425 -334 -188 -338 -159 126 -308 -95 -137 -283 -223 -153 -321 -61 80 -77 92 -132 -250 64 -303 -104 271 -194 105 8 -313 15 -143 25 -191 -327 -282 -441 -262 61 -335 -174 -225 -166 -317 -307 -309 -195 -110 311 -341 -386 -135 -312 -200 -131 -349 -61 82 -353 -7 -340 -273 309 -289 51 41 120 20 -50 -325 13 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 20 w= 29 nsites= 31 E= 2.9e-168 0.225806 0.000000 0.032258 0.000000 0.000000 0.032258 0.000000 0.032258 0.000000 0.000000 0.000000 0.032258 0.096774 0.000000 0.000000 0.290323 0.161290 0.064516 0.000000 0.032258 0.258065 0.000000 0.000000 0.000000 0.000000 0.096774 0.032258 0.032258 0.000000 0.032258 0.032258 0.064516 0.096774 0.000000 0.032258 0.096774 0.032258 0.193548 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.032258 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.967742 0.096774 0.096774 0.000000 0.000000 0.000000 0.193548 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.032258 0.000000 0.032258 0.419355 0.096774 0.032258 0.000000 0.000000 0.612903 0.000000 0.000000 0.000000 0.000000 0.032258 0.000000 0.032258 0.000000 0.032258 0.064516 0.000000 0.000000 0.000000 0.000000 0.161290 0.032258 0.032258 0.000000 0.000000 0.193548 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.645161 0.161290 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.483871 0.000000 0.000000 0.000000 0.258065 0.129032 0.000000 0.032258 0.000000 0.000000 0.000000 0.000000 0.000000 0.032258 0.000000 0.000000 0.000000 0.000000 0.064516 0.000000 0.612903 0.000000 0.000000 0.000000 0.064516 0.258065 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.064516 0.000000 0.000000 0.000000 0.000000 0.064516 0.000000 0.000000 0.000000 0.000000 0.032258 0.000000 0.096774 0.000000 0.258065 0.096774 0.000000 0.000000 0.000000 0.000000 0.032258 0.000000 0.419355 0.000000 0.000000 0.064516 0.032258 0.064516 0.129032 0.000000 0.000000 0.000000 0.096774 0.064516 0.064516 0.000000 0.032258 0.000000 0.032258 0.129032 0.096774 0.096774 0.096774 0.000000 0.000000 0.161290 0.000000 0.032258 0.000000 0.000000 0.387097 0.064516 0.000000 0.000000 0.032258 0.129032 0.064516 0.000000 0.000000 0.000000 0.064516 0.032258 0.032258 0.000000 0.000000 0.032258 0.000000 0.000000 0.000000 0.258065 0.000000 0.000000 0.000000 0.000000 0.645161 0.032258 0.032258 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.064516 0.032258 0.000000 0.000000 0.032258 0.000000 0.000000 0.000000 0.000000 0.000000 0.096774 0.000000 0.000000 0.000000 0.000000 0.225806 0.354839 0.193548 0.000000 0.000000 0.000000 0.000000 0.032258 0.225806 0.000000 0.000000 0.064516 0.000000 0.161290 0.032258 0.000000 0.000000 0.000000 0.064516 0.322581 0.096774 0.000000 0.000000 0.000000 0.000000 0.193548 0.032258 0.000000 0.064516 0.000000 0.064516 0.000000 0.032258 0.000000 0.032258 0.000000 0.032258 0.000000 0.000000 0.000000 0.322581 0.129032 0.064516 0.000000 0.032258 0.129032 0.000000 0.000000 0.000000 0.000000 0.000000 0.032258 0.032258 0.000000 0.451613 0.225806 0.000000 0.000000 0.000000 0.000000 0.000000 0.032258 0.032258 0.032258 0.032258 0.548387 0.000000 0.000000 0.000000 0.000000 0.064516 0.000000 0.000000 0.000000 0.000000 0.032258 0.000000 0.000000 0.096774 0.225806 0.032258 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.032258 0.064516 0.000000 0.032258 0.032258 0.064516 0.193548 0.096774 0.032258 0.000000 0.096774 0.161290 0.000000 0.032258 0.129032 0.000000 0.032258 0.032258 0.000000 0.225806 0.516129 0.000000 0.032258 0.000000 0.000000 0.032258 0.064516 0.000000 0.000000 0.000000 0.032258 0.000000 0.032258 0.032258 0.000000 0.000000 0.000000 0.032258 0.032258 0.000000 0.000000 0.000000 0.032258 0.000000 0.064516 0.000000 0.483871 0.064516 0.000000 0.000000 0.000000 0.000000 0.032258 0.000000 0.096774 0.000000 0.161290 0.387097 0.000000 0.000000 0.032258 0.000000 0.129032 0.000000 0.032258 0.064516 0.032258 0.000000 0.000000 0.032258 0.000000 0.161290 0.096774 0.000000 0.000000 0.000000 0.032258 0.032258 0.000000 0.000000 0.096774 0.000000 0.064516 0.000000 0.032258 0.161290 0.032258 0.000000 0.000000 0.354839 0.064516 0.064516 0.000000 0.064516 0.032258 0.000000 0.000000 0.000000 0.000000 0.032258 0.096774 0.032258 0.000000 0.129032 0.000000 0.129032 0.096774 0.000000 0.032258 0.032258 0.064516 0.032258 0.064516 0.064516 0.000000 0.032258 0.161290 0.000000 0.000000 0.000000 0.032258 0.000000 0.548387 0.000000 0.000000 0.032258 0.000000 0.000000 0.193548 0.000000 0.032258 0.096774 0.032258 0.000000 0.032258 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.032258 0.000000 0.000000 0.516129 0.032258 0.000000 0.000000 0.000000 0.000000 0.000000 0.032258 0.000000 0.032258 0.322581 0.000000 0.032258 0.032258 0.000000 0.000000 0.000000 0.000000 0.064516 0.032258 0.032258 0.096774 0.032258 0.000000 0.064516 0.000000 0.000000 0.387097 0.000000 0.129032 0.096774 0.000000 0.032258 0.032258 0.032258 0.032258 0.000000 0.000000 0.000000 0.000000 0.129032 0.000000 0.032258 0.000000 0.032258 0.000000 0.000000 0.000000 0.032258 0.032258 0.645161 0.000000 0.000000 0.032258 0.000000 0.000000 0.000000 0.000000 0.064516 0.032258 0.000000 0.032258 0.000000 0.000000 0.419355 0.000000 0.032258 0.064516 0.161290 0.064516 0.064516 0.000000 0.032258 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- [SA]AYSASK[AF][AG][VL]xG[LF][TS][RE]S[LM][AR]x[ED]LAPxG[IV]RVN -------------------------------------------------------------------------------- Time 66.47 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- 2BHD_STREX 4.01e-24 5_[1(2.25e-12)]_123_[2(5.67e-19)]_77 3BHD_COMTE 1.55e-22 5_[1(1.40e-14)]_122_[2(3.82e-15)]_76 ADH_DROME 3.21e-15 5_[1(8.02e-10)]_123_[2(1.98e-12)]_77 AP27_MOUSE 2.89e-27 6_[1(5.19e-14)]_119_[2(1.74e-20)]_69 BA72_EUBSP 1.55e-22 5_[1(5.72e-14)]_128_[2(9.68e-16)]_66 BDH_HUMAN 7.00e-24 54_[1(1.02e-14)]_130_[2(1.15e-16)]_109 BPHB_PSEPS 1.49e-19 4_[1(1.12e-13)]_125_[2(4.38e-13)]_96 BUDC_KLETE 4.14e-33 1_[1(5.79e-18)]_127_[2(1.90e-22)]_63 DHES_HUMAN 5.57e-23 1_[1(6.94e-14)]_130_[2(1.55e-16)]_146 DHGB_BACME 1.35e-26 6_[1(1.91e-14)]_130_[2(1.93e-19)]_76 DHII_HUMAN 7.48e-26 33_[1(6.51e-17)]_126_[2(2.54e-16)]_83 DHMA_FLAS1 3.81e-25 13_[1(2.59e-14)]_128_[2(3.96e-18)]_79 ENTA_ECOLI 2.09e-24 4_[1(2.19e-16)]_116_[2(3.19e-15)]_78 FIXR_BRAJA 9.83e-29 35_[1(4.81e-15)]_130_[2(4.54e-21)]_63 GUTD_ECOLI 6.43e-22 1_[1(1.44e-09)]_129_[2(1.51e-19)]_79 HDE_CANTR 7.21e-26 7_[1(9.67e-13)]_132_[2(1.71e-13)]_132_[1(1.92e-16)]_122_[2(7.66e-18)]_413 HDHA_ECOLI 4.92e-27 10_[1(1.10e-15)]_125_[2(1.28e-18)]_70 LIGD_PSEPA 1.73e-19 5_[1(6.98e-12)]_128_[2(6.52e-15)]_122 NODG_RHIME 6.76e-26 5_[1(3.68e-12)]_123_[2(5.97e-21)]_67 RIDH_KLEAE 2.61e-25 13_[1(2.47e-15)]_123_[2(3.39e-17)]_63 YINL_LISMO 9.60e-26 4_[1(1.50e-17)]_126_[2(2.03e-15)]_68 YRTP_BACSU 4.03e-33 5_[1(1.68e-16)]_126_[2(6.53e-24)]_57 CSGA_MYXXA 2.96e-09 85_[2(1.01e-12)]_52 DHB2_HUMAN 9.06e-26 81_[1(3.09e-15)]_127_[2(3.54e-18)]_129 DHB3_HUMAN 1.11e-21 47_[1(4.26e-14)]_127_[2(5.97e-15)]_86 DHCA_HUMAN 4.21e-18 3_[1(1.91e-14)]_166_[2(7.76e-11)]_57 FABI_ECOLI 1.11e-14 5_[1(2.70e-09)]_130_[2(1.98e-12)]_77 FVT1_HUMAN 5.86e-25 31_[1(2.86e-14)]_131_[2(3.54e-18)]_120 HMTR_LEIMA 1.11e-23 5_[1(6.98e-12)]_164_[2(3.97e-19)]_68 MAS1_AGRRA 5.88e-10 244_[1(3.13e-12)]_124_[2(3.64e-05)]_58 PCR_PEA 1.93e-11 85_[1(1.55e-14)]_293 RFBB_NEIGO 1.77e-19 5_[1(5.96e-12)]_136_[2(5.97e-15)]_155 YURA_MYXXA 6.41e-14 157_[2(1.46e-17)]_72 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 2 reached. ******************************************************************************** CPU: tlb-sayonara.imb.uq.edu.au ********************************************************************************