FIMO -- find matches to individual motifs
MAST -- find sequences that match a set of motifs
GLAM2SCAN -- find matches to a gapped motif model.
Upload your own FASTA sequence file: (1000000 sequence characters maximum). Sample DNA database.
(1000000 sequence characters maximum). Sample DNA database.
Select a supported database: supported database: supported database: Category: Database:
Number of alignments to report (< 200)
Examine both strands (DNA only) - forward and reverse complement
Scale motif display threshold by sequence length
Search nucleotide database with protein motifs
Use individual sequence composition in E- and p-value calculation