#!/usr/bin/perl
# FILE: mhmm_globals.pm
# AUTHOR: William Stafford Noble, Phan Lu
# PROJECT: MHMM
# DESCRIPTION: Set up site-specific variables for Meta-MEME web server.

# Name of the person to complain to if something goes wrong.
$webmaster = '@METAMEME_SITE_CONTACT@';

# Website root and output HTML results file.
$webroot = '@METAMEME_WEB_DIR@';
$metasite = '@METAMEME_SITE_URL@';

# Directory where log files will be stored.
$logdir = "$webroot/logs";

# Directory where temporary files will be stored.
$inputdir = "$webroot/user-files";

# Directory where output files will be stored.
$outputdir = "$webroot/output";

# Web URL where output will be available
$metasite_output = "$metasite/output";

# Binaries directory.
$bindir = "@BIN_DIR@";

# MAST database directory.
$datadir = "$bindir/mast_databases";

# Location of dirichlet mixture priors file.
$dirichlets = "$webroot/bin/prior30.plib";

# The maximum number of training sequences.
$maxdataset = 200000;

# Log file for all jobs (only used by submit-verify.cgi).
$global_log_filename = "$logdir/history.log";