nohup: ignoring input
[Thu Nov 04 17:47:28 GMT 2010] net.sf.picard.analysis.CollectAlignmentSummaryMetrics INPUT=can_0_A.bam OUTPUT=can.metr.txt REFERENCE_SEQUENCE=aa.fasta VALIDATION_STRINGENCY=SILENT    ASSUME_SORTED=true MAX_INSERT_SIZE=100000 ADAPTER_SEQUENCE=[AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT, AGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG, AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT, AGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGTCTTCTGCTTG, AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT, AGATCGGAAGAGCACACGTCTGAACTCCAGTCACNNNNNNNNATCTCGTATGCCGTCTTCTGCTTG] IS_BISULFITE_SEQUENCED=false TMP_DIR=/tmp/xianggan VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000
[Thu Nov 04 18:00:03 GMT 2010] net.sf.picard.analysis.CollectAlignmentSummaryMetrics done.
Runtime.totalMemory()=436797440