R version 2.9.1 (2009-06-26) Copyright (C) 2009 The R Foundation for Statistical Computing ISBN 3-900051-07-0 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. Natural language support but running in an English locale R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > source("merge.R") Loading required package: g.data > # make.merge.factors() > b <- merge.genome("callus.size", file="magic.callus.txt") merging callus.size 1 1 marker MN1_29291 2 marker MN1_29716 3 marker MN1_112907 4 marker MASC03771 5 marker MN1_197787 6 marker MN1_340810 7 marker MN1_395107 8 marker MN1_444820 9 marker MN1_494205 10 marker MN1_592863 11 marker MN1_592760 12 marker BKN118 13 marker MN1_1042427 14 marker CRY2_1021 15 marker CRY2_429 16 marker MASC07014 17 marker MASC03609 18 marker MN1_1296068 19 marker MN1_1399466 20 marker AXR1_381 21 marker MASC07424 22 marker MASC07283 23 marker MN1_1602026 24 marker MN1_1844838 25 marker MASC00879 26 marker MN1_1945105 27 marker MASC07329 28 marker MN1_2211127 29 marker MASC03758 30 marker MASC03812 31 marker MN1_2547756 32 marker MN1_2548265 33 marker MN1_2696683 34 marker NMSNP1-2844525 35 marker MN1_2991816 36 marker MN1_3041659 37 marker PHYA_6473 38 marker PHYA_924 39 marker PHYA_119 40 marker MN1_3169209 41 marker MN1_3229670 42 marker MN1_3294749 43 marker MN1_3398242 44 marker MASC09203 45 marker MASC00490 46 marker MN1_3503859 47 marker MN1_3645500 48 marker MN1_3678711 49 marker MN1_3798407 50 marker MN1_3872522 51 marker MN1_3941311 52 marker MN1_4041372 53 marker MN1_4096221 54 marker MN1_4142767 55 marker MN1_4248888 56 marker MN1_4317541 57 marker MN1_4396426 58 marker MN1_4529322 59 marker MN1_4569396 60 marker MN1_4671355 61 marker MN1_4947324 62 marker MN1_4992106 63 marker MN1_5095606 64 marker GAI_173 65 marker GAI_2211 66 marker MN1_5206767 67 marker MN1_5206981 68 marker MN1_5290742 69 marker MASC00816 70 marker MASC00820 71 marker MN1_5482065 72 marker SPS1_151 73 marker MN1_5628735 74 marker MN1_5669326 75 marker MN1_5860106 76 marker MN1_5860511 77 marker MASC00503 78 marker MASC02743 79 marker MN1_5923042 80 marker NMSNP1-5923293 81 marker MFT_113 82 marker MFT_668 83 marker MFT_2488 84 marker MFT_3459 85 marker BUD1_34 86 marker BUD1_348 87 marker MASC03577 88 marker MASC04085 89 marker NMSNP1-6833309 90 marker MP_68 91 marker MASC07242 92 marker NMSNP1-6941245 93 marker NMSNP1-7096171 94 marker MASC1 95 marker MASC2 96 marker NMSNP1-7672828 97 marker NMSNP1-7735482 98 marker GI_123 99 marker GI_511 100 marker GI_2067 101 marker GI_2186 102 marker GI_5292 103 marker BKN923 104 marker PFT1_6609 105 marker PFT1_5341 106 marker PFT1_3782 107 marker PFT1_2195 108 marker PFT1_1656 109 marker PFT1_1066 110 marker CAL_454 111 marker SGCSNP17579 112 marker MASC05303 113 marker MASC00393 114 marker MASC04947 115 marker NMSNP1-9973291 116 marker MN1_10095364 117 marker MN1_10176455 118 marker MN1_10423523 119 marker MN1_10423673 120 marker MN1_10547598 121 marker NMSNP1-10720273 122 marker MN1_10841443 123 marker MN1_10983877 124 marker NMSNP1-11037297 125 marker MASC03534 126 marker MASC02650 127 marker MN1_11160016 128 marker MN1_11159773 129 marker MASC01991 130 marker NMSNP1-11399885 131 marker FRL2_2232 132 marker MN1_11466199 133 marker MN1_11553514 134 marker MN1_11655695 135 marker MN1_11850148 136 marker MN1_12093546 137 marker MASC00317 138 marker PERL0107626 139 marker MN1_12892627 140 marker NMSNP1-13090493 141 marker SGCSNP10165 142 marker MASC03490 143 marker MN1_13541819 144 marker MN1_13671674 145 marker MASC02571 146 marker MASC02577 147 marker MN1_14162893 148 marker PERL0126101 149 marker PERL0126888 150 marker PERL0128810 151 marker MASC04128 152 marker NMSNP1-15977186 153 marker MASC03083 154 marker PERL0132168 155 marker PERL0133385 156 marker MASC04211 157 marker MASC06784 158 marker MN1_16874540 159 marker MN1_17151137 160 marker MN1_17181992 161 marker PERL0147872 162 marker MN1_17682799 163 marker MN1_17880459 164 marker MN1_18040860 165 marker MN1_18232105 166 marker MN1_18632912 167 marker MN1_18633081 168 marker MASC00545 169 marker MN1_19400778 170 marker MASC00855 171 marker MN1_19506032 172 marker MN1_19519292 173 marker MN1_19782301 174 marker MN1_19782567 175 marker MASC03754 176 marker MASC01983 177 marker MN1_20174828 178 marker NMSNP1-20175347 179 marker MASC00497 180 marker PERL0172350 181 marker PERL0173191 182 marker PERL0174281 183 marker MASC03676 184 marker MASC00513 185 marker MASC07288 186 marker MN1_21079881 187 marker MN1_21080288 188 marker MASC00290 189 marker MASC07198 190 marker NMSNP1-21401093 191 marker NMSNP1-21401646 192 marker MN1_21669171 193 marker MN1_21669564 194 marker MN1_21908389 195 marker MN1_21944762 196 marker NMSNP1-22283511 197 marker MASC04170 198 marker MASC02598 199 marker MN1_22354107 200 marker NMSNP1-22388154 201 marker MN1_22971216 202 marker MN1_23077276 203 marker MN1_23270514 204 marker MN1_23270852 205 marker MN1_23474588 206 marker MN1_23820732 207 marker MN1_23893336 208 marker MASC03447 209 marker MN1_24322296 210 marker FT_585 211 marker FT_1643 212 marker FT_2940 213 marker FT_3485 214 marker NMSNP1-24396180 215 marker MN1_24468414 216 marker NMSNP1-24526295 217 marker MN1_24694673 218 marker NMSNP1-24738247 219 marker RGL1_1171 220 marker RGL1_1511 221 marker MN1_24795166 222 marker SGCSNP10530 223 marker MN1_25375953 224 marker MN1_25487722 225 marker FKF1_447 226 marker FKF1_606 227 marker FKF1_2281 228 marker MASC00557 229 marker PERL0234167 230 marker PERL0235052 231 marker PERL0236029 232 marker MN1_26278413 233 marker MASC00516 234 marker MASC03684 235 marker MN1_26454394 236 marker MASC02946 237 marker NMSNP1-26685638 238 marker MN1_26787727 239 marker MN1_26795231 240 marker MASC00553 241 marker NMSNP1-26894598 242 marker MASC02765 243 marker MN1_26993261 244 marker MN1_27251404 245 marker MN1_27291170 246 marker MN1_27650077 247 marker MASC00664 248 marker NMSNP1-27855784 249 marker MASC00850 250 marker MN1_28190283 251 marker MN1_28408707 252 marker MN1_28584258 253 marker MASC02069 254 marker MN1_28666837 255 marker SGCSNP10779 256 marker MASC03765 257 marker MASC04717 258 marker MN1_29326678 259 marker MN1_29326774 260 marker NMSNP1-29393465 261 marker MASC00675 262 marker MASC07393 263 marker MN1_29496859 264 marker MN1_29612426 265 marker MN1_29696345 266 marker MASC07257 267 marker NMSNP1-29898175 268 marker MN1_30049220 269 marker MN1_30116495 270 marker MN1_30214313 271 marker MN1_30312456 272 marker MN1_30312683 273 marker MASC02050 274 marker MASC09206 merging callus.size 2 275 marker RGA_2019 276 marker RGA_1671 277 marker RGA_1023 278 marker MN2_285851 279 marker MN2_286127 280 marker NMSNP2-311254 281 marker MN2_311552 282 marker MN2_322690 283 marker MN2_347772 284 marker NMSNP2-453319 285 marker MN2_592845 286 marker MN2_694239 287 marker MN2_764549 288 marker NMSNP2-839805 289 marker MN2_948609 290 marker MASC05477 291 marker MN2_1149628 292 marker MN2_1737583 293 marker MN2_1798378 294 marker NMSNP2-1798607 295 marker MASC06808 296 marker MN2_2270500 297 marker MN2_2615632 298 marker MASC05962 299 marker MASC05827 300 marker MASC03060 301 marker MASC05803 302 marker SGCSNP1828 303 marker MASC05711 304 marker MASC05848 305 marker NMSNP2-3946439 306 marker MASC05857 307 marker MN2_4354465 308 marker MN2_4354824 309 marker MASC05420 310 marker MASC05782 311 marker MN2_5085768 312 marker MASC05360 313 marker MN2_5250093 314 marker MASC05766 315 marker NMSNP2-6032798 316 marker MASC07357 317 marker MN2_6654226 318 marker MASC05757 319 marker MN2_7072735 320 marker MASC05443 321 marker NMSNP2-7150490 322 marker MASC05484 323 marker MN2_7551582 324 marker MN2_7650227 325 marker FDP_22 326 marker FDP_354 327 marker FDP_733 328 marker FDP_896 329 marker FDP_2020 330 marker MN2_7742622 331 marker MN2_8041868 332 marker PHYB_476 333 marker PHYB_617 334 marker PHYB_1645 335 marker PHYB_2850 336 marker PHYB_3060 337 marker PHYB_4171 338 marker PHYB_5215 339 marker MN2_8323924 340 marker MN2_8443352 341 marker FVE_1851 342 marker MASC07330 343 marker MN2_8594369 344 marker MN2_8659973 345 marker MASC07166 346 marker MN2_8750048 347 marker MN2_8799676 348 marker MASC02995 349 marker MASC05584 350 marker MN2_9256094 351 marker MN2_9256220 352 marker MASC02600 353 marker MN2_9428987 354 marker MASC07354 355 marker SVP_88 356 marker SVP_694 357 marker SVP_993 358 marker SVP_3403 359 marker SVP_4824 360 marker MN2_9653239 361 marker MASC02928 362 marker MASC03019 363 marker MN2_10134400 364 marker MN2_10249407 365 marker MN2_10566684 366 marker MN2_10799937 367 marker MN2_10900221 368 marker MASC02949 369 marker MAX1_26 370 marker MAX1_402 371 marker MAX1_657 372 marker MASC05927 373 marker MASC05920 374 marker ER_472 375 marker MN2_11300378 376 marker MASC06116 377 marker MASC09221 378 marker MN2_11457357 379 marker MASC05372 380 marker MASC02863 381 marker MN2_11564603 382 marker MN2_11595170 383 marker MN2_11691452 384 marker MASC05327 385 marker ATC_828 386 marker ATC_1679 387 marker ATC_2596 388 marker MASC00349 389 marker MN2_12187411 390 marker MN2_12296907 391 marker MN2_12435349 392 marker MASC07284 393 marker MN2_12655100 394 marker MASC02492 395 marker MASC02787 396 marker MN2_13090443 397 marker MN2_13201786 398 marker MN2_13265590 399 marker MASC05434 400 marker MN2_13326105 401 marker MN2_13326473 402 marker MN2_13471565 403 marker MN2_13605144 404 marker MN2_13756416 405 marker MASC02512 406 marker MASC02971 407 marker MN2_14003409 408 marker MASC00585 409 marker SAR1_280 410 marker SAR1_183 411 marker MASC06798 412 marker FES1_3177 413 marker FES1_2930 414 marker FES1_1877 415 marker FES1_1177 416 marker MN2_14350717 417 marker MASC05841 418 marker MASC09222 419 marker MN2_14406873 420 marker MN2_14407001 421 marker MN2_14583090 422 marker NMSNP2-14697188 423 marker MN2_14801460 424 marker MASC06034 425 marker MN2_14949589 426 marker MN2_15251700 427 marker MASC05384 428 marker RAX2_405 429 marker MN2_15565512 430 marker MASC05402 431 marker MASC05385 432 marker MN2_15801493 433 marker MN2_16080260 434 marker MASC02232 435 marker MN2_16352463 436 marker MN2_16437489 437 marker MN2_16487410 438 marker MASC06077 439 marker HOS1_1176 440 marker HOS1_1788 441 marker HOS1_5516 442 marker HOS1_5595 443 marker HOS1_5954 444 marker MN2_16684166 445 marker MN2_16837474 446 marker MASC02930 447 marker MASC06022 448 marker NMSNP2-16908351 449 marker MN2_17051422 450 marker MASC02158 451 marker MN2_17304379 452 marker MN2_17606148 453 marker MN2_17656418 454 marker MAX2_67 455 marker MAX2_216 456 marker MAX2_582 457 marker MAX2_752 458 marker MN2_17792406 459 marker MN2_17844494 460 marker MN2_17860020 461 marker MN2_17899626 462 marker MASC02020 463 marker NMSNP2-18004250 464 marker MN2_18034146 465 marker MASC03046 466 marker MN2_18402190 467 marker MAX3_67 468 marker MAX3_141 469 marker MN2_18603109 470 marker MN2_18701292 471 marker MN2_18753024 472 marker SOC1_2890 473 marker SOC1_2742 474 marker SOC1_2480 475 marker SOC1_1594 476 marker SOC1_1494 477 marker SOC1_651 478 marker SOC1_461 479 marker MN2_18954429 480 marker MASC06044 481 marker MN2_18986211 482 marker MN2_19104250 483 marker MN2_19253011 484 marker MN2_19504653 485 marker MN2_19602061 merging callus.size 3 486 marker MASC03898 487 marker NMSNP3-297894 488 marker MN3_580517 489 marker MN3_691072 490 marker RGL2_3396 491 marker RGL2_3255 492 marker RGL2_2959 493 marker RGL2_2115 494 marker RGL2_617 495 marker MN3_965032 496 marker MASC03001 497 marker FLK_2200 498 marker FLK_1526 499 marker FLK_958 500 marker MN3_1271206 501 marker GAr2_1349 502 marker NMSNP3-1638652 503 marker NMSNP3-1689583 504 marker MASC00175 505 marker MN3_1803905 506 marker NMSNP3-2216922 507 marker MN3_2232003 508 marker MN3_2232935 509 marker MN3_2236560 510 marker MN3_2236721 511 marker MN3_2485350 512 marker MN3_2565035 513 marker MN3_2770433 514 marker MASC07180 515 marker MN3_2967877 516 marker MN3_3344789 517 marker MASC03344 518 marker MASC00560 519 marker MASC00564 520 marker MN3_3610522 521 marker SPY_1453 522 marker SPY_3013 523 marker SPY_5334 524 marker MN3_3679292 525 marker MN3_3679541 526 marker MN3_3895975 527 marker MN3_3991983 528 marker PIE1_701 529 marker PIE1_898 530 marker PIE1_1867 531 marker PIE1_5824 532 marker PIE1_7118 533 marker PIE1_8627 534 marker PIE1_9146 535 marker MN3_4141103 536 marker MN3_4194859 537 marker MASC04486 538 marker MN3_4305074 539 marker MN3_4356066 540 marker MN3_4470311 541 marker MN3_4591414 542 marker MASC02947 543 marker MASC01400 544 marker MASC04507 545 marker NMSNP3-4991903 546 marker NMSNP3-5091855 547 marker MN3_5210480 548 marker MN3_5299949 549 marker MN3_5440626 550 marker MASC04409 551 marker MN3_5640301 552 marker MN3_5749951 553 marker MN3_5910420 554 marker MASC01537 555 marker MN3_6240600 556 marker MASC01747 557 marker MN3_6450403 558 marker MASC04279 559 marker MASC04295 560 marker MN3_6811299 561 marker MN3_6890804 562 marker MASC02637 563 marker MN3_7120942 564 marker MN3_7225496 565 marker MN3_7392098 566 marker MASC01568 567 marker MASC01672 568 marker MASC02447 569 marker MN3_7590615 570 marker MASC01373 571 marker MN3_7842354 572 marker MN3_7917701 573 marker NMSNP3-7976242 574 marker NMSNP3-8041859 575 marker MN3_8042142 576 marker MASC04053 577 marker MN3_8118135 578 marker MN3_8190264 579 marker AXR2_486 580 marker MASC04302 581 marker NMSNP3-8447967 582 marker MN3_8448466 583 marker MASC02733 584 marker MN3_8535358 585 marker MASC00324 586 marker MN3_8693286 587 marker MN3_8693523 588 marker MN3_8828575 589 marker MN3_8971383 590 marker MASC04510 591 marker MASC04560 592 marker MASC04498 593 marker MN3_9279089 594 marker MN3_9342356 595 marker MN3_9547648 596 marker MASC01287 597 marker MN3_9747529 598 marker MASC01390 599 marker MASC04523 600 marker MN3_10055595 601 marker MN3_10142705 602 marker MASC01072 603 marker MASC01048 604 marker MN3_10363610 605 marker MN3_10382169 606 marker MN3_10382626 607 marker MASC02770 608 marker MN3_10790631 609 marker MN3_10790732 610 marker MASC01098 611 marker NMSNP3-10995664 612 marker MN3_11097848 613 marker MN3_11190184 614 marker MN3_11192189 615 marker MN3_11293349 616 marker MN3_11398208 617 marker MASC04519 618 marker SGCSNP4309 619 marker MASC02222 620 marker MN3_12044914 621 marker MN3_12348963 622 marker MASC04262 623 marker NMSNP3-12647157 624 marker NMSNP3-12647572 625 marker MN3_13148284 626 marker MASC07409 627 marker MASC05049 628 marker NMSNP3-14333132 629 marker NMSNP3-14333216 630 marker NMSNP3-15028196 631 marker MN3_15233489 632 marker MN3_15328754 633 marker MN3_15679400 634 marker MN3_15679799 635 marker MN3_15771965 636 marker MN3_15880080 637 marker MN3_15977654 638 marker MASC04630 639 marker MASC07090 640 marker MN3_16176877 641 marker MASC05163 642 marker MN3_16489672 643 marker NMSNP3-16553703 644 marker MN3_16608234 645 marker MN3_16608317 646 marker MN3_16608615 647 marker MASC01148 648 marker PERL0600049 649 marker MN3_16676939 650 marker PERL0600074 651 marker MN3_17166362 652 marker NMSNP3-17381469 653 marker MASC00948 654 marker MASC07256 655 marker MASC03166 656 marker MASC03175 657 marker MASC09041 658 marker MASC07226 659 marker MN3_17766901 660 marker MN3_17767232 661 marker NMSNP3-17882342 662 marker SGCSNP6012 663 marker BKN7185 664 marker NMSNP3-18379643 665 marker NMSNP3-18379818 666 marker RAX3_419 667 marker MN3_18510255 668 marker MASC03176 669 marker MASC09224 670 marker MN3_18590814 671 marker MASC01820 672 marker MASC02769 673 marker NMSNP3-18980664 674 marker MN3_19077245 675 marker MN3_19179085 676 marker MN3_19283177 677 marker MN3_19533632 678 marker NMSNP3-19627883 679 marker MASC02507 680 marker MN3_19725553 681 marker MASC04031 682 marker MASC01006 683 marker MN3_19831791 684 marker NMSNP3-19831941 685 marker MASC03218 686 marker MASC04039 687 marker MASC07178 688 marker MN3_20027994 689 marker MN3_20028297 690 marker MASC04671 691 marker AMP1_458 692 marker MASC04739 693 marker MN3_20428407 694 marker MASC04749 695 marker MASC00009 696 marker MASC00010 697 marker MN3_20607883 698 marker MASC07261 699 marker MN3_20728619 700 marker MASC00020 701 marker MN3_20828994 702 marker MASC00028 703 marker NMSNP3-21034379 704 marker MN3_21127619 705 marker NMSNP3-21230086 706 marker MN3_21230323 707 marker MN3_21309453 708 marker MN3_21528561 709 marker MN3_21632898 710 marker MASC02322 711 marker MN3_21728318 712 marker MASC02321 713 marker MN3_21927565 714 marker NMSNP3-21989468 715 marker ARGOS_479 716 marker MN3_22146586 717 marker MN3_22230240 718 marker MN3_22316041 719 marker MN3_22370904 720 marker NMSNP3-22617260 721 marker MASC04925 722 marker NMSNP3-22678932 723 marker MASC03109 724 marker MN3_22787640 725 marker MN3_22843506 726 marker MN3_23054119 727 marker MN3_23099266 728 marker MN3_23260905 729 marker GAr3_248 730 marker GAr3_390 731 marker GAr3_949 732 marker GAr3_1381 733 marker GAr3_2130 734 marker GAr3_3160 735 marker GAr3_3658 merging callus.size 4 736 marker MN4_48812OK 737 marker MN4_142943 738 marker MN4_241821 739 marker FRI_725 740 marker FRI_927 741 marker NMSNP4-270272 742 marker FRI_1888 743 marker FRI_2343 744 marker MASC04123 745 marker MN4_428535 746 marker MN4_428737 747 marker MN4_541323 748 marker MASC02680 749 marker MASC04651 750 marker MASC02790 751 marker MASC02819 752 marker MASC05116 753 marker MN4_1055425 754 marker MASC04725 755 marker MASC04658 756 marker LD_5903 757 marker LD_5094 758 marker LD_3166 759 marker LD_258 760 marker AXR6_733 761 marker GA1_8429 762 marker GA1_7845 763 marker GA1_7762 764 marker GA1_5420 765 marker GA1_4586 766 marker GA1_3232 767 marker GA1_2963 768 marker GA1_1502 769 marker MN4_1553589 770 marker NMSNP4-1585200 771 marker MN4_1613365 772 marker MASC02074 773 marker NMSNP4-2133049 774 marker MN4_2241604 775 marker MN4_2441131 776 marker MASC04881 777 marker NMSNP4-2510397 778 marker MASC07280 779 marker MASC07337 780 marker MASC07341 781 marker MASC03328 782 marker MASC04894 783 marker MASC04117 784 marker MASC09225 785 marker MASC03713 786 marker NMSNP4-3006988 787 marker PERL0692204 788 marker PERL0695439 789 marker PERL0697342 790 marker PERL0699005 791 marker PERL0700458 792 marker PERL0701286 793 marker NMSNP4-4803012 794 marker MN4_4933868 795 marker MASC04672 796 marker MASC05102 797 marker MN4_5291400 798 marker CRY1_1112 799 marker MN4_5775707 800 marker MASC05017 801 marker MASC02654 802 marker MASC05208 803 marker MASC00122 804 marker NMSNP4-6781435 805 marker MN4_6924080 806 marker NMSNP4-7045721 807 marker MN4_7177248 808 marker MASC00093 809 marker MASC07316 810 marker MASC00094 811 marker NMSNP4-7448732 812 marker MN4_7858241 813 marker MASC03250 814 marker MN4_8078648 815 marker MN4_8177683 816 marker NMSNP4-8482327 817 marker MN4_8789187 818 marker NMSNP4-8876711 819 marker MN4_8957775 820 marker ESD4_1150 821 marker ESD4_1264 822 marker ESD4_1754 823 marker ESD4_1925 824 marker ESD4_4722 825 marker MN4_9121213 826 marker MASC03269 827 marker MN4_9176420 828 marker PHYD_4813 829 marker PHYD_3586 830 marker PHYD_3094 831 marker PHYD_2806 832 marker PHYD_2290 833 marker PHYD_1815 834 marker PHYD_930 835 marker MN4_9213312 836 marker MN4_9226751 837 marker MN4_9276346 838 marker MASC00901 839 marker NMSNP4-9315210 840 marker MN4_9364998 841 marker NMSNP4-9377790 842 marker NMSNP4-9630930 843 marker MASC03263 844 marker MN4_9952405 845 marker MASC07426 846 marker PHYE_4688 847 marker PHYE_2771 848 marker PHYE_1561 849 marker MASC02468 850 marker NMSNP4-10276307 851 marker MASC01526 852 marker MN4_10482087 853 marker MASC02548 854 marker MN4_10659155 855 marker NMSNP4-10777270 856 marker NMSNP4-10977574 857 marker TSF_2439 858 marker TSF_606 859 marker MASC01686 860 marker NMSNP4-11326190 861 marker MASC07397 862 marker MN4_11488359 863 marker MASC02503 864 marker MN4_11579839 865 marker MN4_11580143 866 marker MASC04642 867 marker MASC04141 868 marker MN4_11878394 869 marker MN4_11984772 870 marker NMSNP4-12076756 871 marker MN4_12195812 872 marker MASC03508 873 marker MN4_12326350 874 marker SLY1_586 875 marker SLY1_1984 876 marker SLY1_2145 877 marker MN4_12654226 878 marker AGL24_4208 879 marker AGL24_3913 880 marker AGL24_3653 881 marker AGL24_3515 882 marker AGL24_3240 883 marker AGL24_2913 884 marker AGL24_848 885 marker AGL24_59 886 marker MN4_12900427 887 marker NMSNP4-12978586 888 marker MASC01816 889 marker MN4_13078471 890 marker MN4_13180063 891 marker NMSNP4-13213908 892 marker MASC03074 893 marker MN4_13238316 894 marker MN4_13358579 895 marker MN4_13576438 896 marker MASC02802 897 marker MASC00006 898 marker NMSNP4-13680544 899 marker MN4_13753532 900 marker MN4_13978437 901 marker MN4_14075777 902 marker MN4_14177230 903 marker MASC03152 904 marker MN4_14318307 905 marker MASC00126 906 marker MN4_14379736 907 marker NMSNP4-14379876 908 marker MN4_14533015 909 marker MN4_14533372 910 marker NMSNP4-14635805 911 marker MASC03154 912 marker MASC02354 913 marker MN4_14732051 914 marker VIN3L_5026 915 marker VIN3L_4961 916 marker VIN3L_4569 917 marker VIN3L_50 918 marker MN4_14935855 919 marker MN4_14936037 920 marker MN4_15087653 921 marker NMSNP4-15175468 922 marker MN4_15274377 923 marker MN4_15329740 924 marker MASC03336 925 marker MN4_15571879 926 marker MN4_15662175 927 marker NMSNP4-15765120 928 marker MASC03998 929 marker MAX4_84 930 marker MAX4_184 931 marker MN4_15865150 932 marker MASC03874 933 marker MN4_15925187 934 marker MN4_16025638 935 marker MN4_16338157 936 marker MN4_16383274 937 marker MN4_16474676 938 marker MN4_16547251 939 marker MASC07383 940 marker MASC07295 941 marker MN4_16742072 942 marker MASC04199 943 marker MN4_16888200 944 marker NMSNP4-16944691 945 marker FD_250 946 marker FD_1596 947 marker FD_2774 948 marker NMSNP4-17038400 949 marker MASC03225 950 marker MN4_17442969 951 marker MASC07250 952 marker MN4_17609253 953 marker ANT_295 954 marker MASC09216 955 marker MN4_17803780 956 marker MN4_17906421 957 marker MASC03594 958 marker NMSNP4-18156355 959 marker MASC01711 960 marker MN4_18187339 961 marker MN4_18268215 962 marker MN4_18371994 963 marker NMSNP4-18417100 964 marker MASC05258 merging callus.size 5 965 marker MN5_107584 966 marker MASC01792 967 marker MN5_428961 968 marker MN5_476404 969 marker NMSNP5-476785 970 marker MASC00144 971 marker MN5_625679 972 marker MN5_658142 973 marker MASC03480 974 marker MN5_1041169 975 marker MN5_1154885 976 marker MN5_1337439 977 marker MN5_1399718 978 marker MN5_1399959 979 marker MN5_1446247 980 marker MN5_1586146 981 marker ATMYB33_119 982 marker ATMYB33_3059 983 marker MN5_1841284 984 marker MN5_1931248 985 marker MN5_1943883 986 marker MASC04531 987 marker MN5_2153137 988 marker MN5_2192958 989 marker MN5_2244739 990 marker MN5_2244867 991 marker MN5_2296406 992 marker MASC03207 993 marker MASC04390 994 marker MASC02783 995 marker MN5_2707605 996 marker MN5_2799421 997 marker MN5_2808917 998 marker MN5_2900405 999 marker MN5_2925212 1000 marker MN5_2974376 1001 marker MN5_3092677 1002 marker MN5_3092945 1003 marker MN5_3149961 1004 marker FLC_7207 1005 marker FLC_6809 1006 marker FLC_5907 1007 marker FLC_3312 1008 marker FLC_3215 1009 marker FLC_3090 1010 marker FLC_2775 1011 marker MN5_3177504 1012 marker MN5_3200509 1013 marker MN5_3227635 1014 marker MN5_3281887 1015 marker MASC09207 1016 marker MN5_3289426 1017 marker MN5_3330228 1018 marker MN5_3330509 1019 marker MN5_3392815 1020 marker MN5_3491425 1021 marker MN5_3498141 1022 marker MN5_3695672 1023 marker MN5_3908213 1024 marker MN5_4010649 1025 marker NMSNP5-4148593 1026 marker MN5_4179168 1027 marker NMSNP5-4223380 1028 marker MASC05127 1029 marker MN5_4293557 1030 marker MN5_4318001 1031 marker MN5_4318365 1032 marker MN5_4327715 1033 marker MN5_4344025 1034 marker MN5_4428863 1035 marker MN5_4820535 1036 marker MASC01139 1037 marker MN5_4897416 1038 marker MN5_5005750 1039 marker MASC01136 1040 marker MASC01137 1041 marker CO_1457 1042 marker CO_612 1043 marker CO_347 1044 marker CO_203 1045 marker MN5_5198324 1046 marker MN5_5318989 1047 marker FRL1_543 1048 marker FRL1_971 1049 marker FRL1_1127 1050 marker NMSNP5-5388280 1051 marker MASC02570 1052 marker MASC01586 1053 marker MN5_5452600 1054 marker MN5_5726284 1055 marker TFL2_3265 1056 marker TFL2_2993 1057 marker TFL2_1346 1058 marker TFL2_1199 1059 marker TFL2_775 1060 marker NMSNP5-5841444 1061 marker MASC01538 1062 marker MN5_6222071 1063 marker NMSNP5-6222282 1064 marker MASC00072 1065 marker MN5_6322454 1066 marker MASC02568 1067 marker NMSNP5-6416385 1068 marker MASC04986 1069 marker NMSNP5-6523120 1070 marker MN5_6523351 1071 marker MN5_6621153 1072 marker MN5_6708112 1073 marker MN5_6820592 1074 marker MN5_6899767 1075 marker MN5_6899957 1076 marker MN5_7004457 1077 marker MN5_7279056 1078 marker MASC01742 1079 marker MASC04577 1080 marker RAX1_313 1081 marker MASC09209 1082 marker MASC07384 1083 marker SGCSNP14068 1084 marker SGCSNP14097 1085 marker FPF1_1263 1086 marker MASC03559 1087 marker NMSNP5-8894884 1088 marker BKN10577 1089 marker NMSNP5-9105484 1090 marker MASC07368 1091 marker GAr1_504 1092 marker GAr1_3640 1093 marker MASC03158 1094 marker SGCSNP14295 1095 marker NMSNP5-10525706 1096 marker MN5_10525862 1097 marker NMSNP5-10910098 1098 marker MASC03952 1099 marker PERL0963920 1100 marker PERL0965490 1101 marker PERL0968417 1102 marker MASC09210 1103 marker MASC03601 1104 marker MN5_12698438 1105 marker MN5_12698621 1106 marker MN5_12966464 1107 marker NMSNP5-13272366 1108 marker NMSNP5-13614560 1109 marker NMSNP5-13614633 1110 marker MASC01361 1111 marker NMSNP5-14303707 1112 marker NMSNP5-14661352 1113 marker MN5_14712065 1114 marker MN5_14870918 1115 marker MN5_14952906 1116 marker MASC04275 1117 marker NMSNP5-15065196 1118 marker NMSNP5-15065361 1119 marker MN5_15316041 1120 marker MASC04605 1121 marker MN5_15457103 1122 marker MASC07404 1123 marker NMSNP5-15767945 1124 marker MN5_15768163 1125 marker NMSNP5-15965250 1126 marker ERA1_470 1127 marker MN5_16122807 1128 marker MASC07230 1129 marker MASC04448 1130 marker MN5_16368332 1131 marker NMSNP5-16446291 1132 marker MN5_16964744 1133 marker MASC01341 1134 marker MASC03128 1135 marker MN5_17242619 1136 marker MASC02450 1137 marker MASC07302 1138 marker MASC04536 1139 marker MN5_17569666 1140 marker NMSNP5-17629384 1141 marker PNH_348 1142 marker MASC04540 1143 marker MN5_17864875 1144 marker NMSNP5-17924620 1145 marker MN5_17924704 1146 marker MASC04430 1147 marker NMSNP5-18065760 1148 marker MN5_18166799 1149 marker MN5_18258441 1150 marker NMSNP5-18258766 1151 marker MASC02679 1152 marker MASC01056 1153 marker NMSNP5-18666593 1154 marker MN5_18782455 1155 marker MN5_19124078 1156 marker MN5_19124146 1157 marker MASC02607 1158 marker MN5_19316033 1159 marker NMSNP5-19316305 1160 marker MN5_19415082 1161 marker MASC04412 1162 marker MN5_19503408 1163 marker MN5_19503546 1164 marker NMSNP5-19614462 1165 marker MASC07356 1166 marker MASC01039 1167 marker NMSNP5-19715921 1168 marker MN5_19716017 1169 marker MN5_19823529 1170 marker MN5_20021652 1171 marker MN5_20128524 1172 marker MN5_20215473 1173 marker MN5_20318139 1174 marker MASC07276 1175 marker NMSNP5-20915321 1176 marker NMSNP5-21019318 1177 marker MN5_21039080 1178 marker MN5_21039146 1179 marker MASC04591 1180 marker NMSNP5-21319032 1181 marker MN5_21415676 1182 marker MN5_21718779 1183 marker MN5_21719081 1184 marker NMSNP5-21881149 1185 marker NMSNP5-21881254 1186 marker MN5_22040876 1187 marker MN5_22116737 1188 marker MN5_22318136 1189 marker MN5_22414731 1190 marker MN5_22415000 1191 marker MN5_22627502 1192 marker NMSNP5-22714522 1193 marker MN5_22714627 1194 marker NMSNP5-22918841 1195 marker MN5_23029638 1196 marker NMSNP5-23115566 1197 marker VIN3_2942 1198 marker VIN3_2713 1199 marker VIN3_1614 1200 marker VIN3_300 1201 marker NMSNP5-23270994 1202 marker MASC04571 1203 marker MN5_23413242 1204 marker MASC01545 1205 marker MASC01216 1206 marker MN5_23722677 1207 marker MN5_23722914 1208 marker NMSNP5-23815532 1209 marker MN5_23815654 1210 marker MASC01063 1211 marker MN5_23920457 1212 marker MN5_23920887 1213 marker MASC01444 1214 marker MN5_24131319 1215 marker MASC04574 1216 marker MASC04576 1217 marker REV_596 1218 marker SGCSNP18826 1219 marker MN5_24832902 1220 marker MN5_24833253 1221 marker MASC01180 1222 marker MASC02943 1223 marker MASC07297 1224 marker BFT_191 1225 marker BFT_297 1226 marker BFT_1187 1227 marker NMSNP5-24996685 1228 marker MN5_24996889 1229 marker MASC07055 1230 marker CDF1_2448 1231 marker CDF1_2235 1232 marker CDF1_1519 1233 marker CDF1_943 1234 marker CDF1_696 1235 marker ELF5_3595 1236 marker ELF5_3209 1237 marker ELF5_3032 1238 marker ELF5_2695 1239 marker ELF5_1789 1240 marker ELF5_1597 1241 marker MASC02746 1242 marker MASC01306 1243 marker MASC04437 1244 marker MASC01591 1245 marker MN5_25819956 1246 marker MN5_25963543 1247 marker MN5_26029439 1248 marker MN5_26121184 1249 marker MN5_26220737 1250 marker MN5_26379737 1251 marker MN5_26380009 1252 marker MN5_26437895 1253 marker MN5_26438023 1254 marker MN5_26708459 1255 marker MN5_26877341 There were 30 warnings (use warnings() to see them) > pdf("callus_test.pdf") > happyplot(b) Error in offset:rangemax : NA/NaN argument Calls: happyplot In addition: Warning message: In is.na(object) : is.na() applied to non-(list or vector) of type 'NULL' Execution halted