cmp.c,205
int icmp(8,140
int licmp(15,242
int Icmp(20,313
int fcmp(27,367
int lfcmp(40,563
int Fcmp(53,764
int Rstrcmp(60,822
int Strcmp(75,1092
int nStrcmp(85,1214
int SStrcmp(95,1313
int uscmp(102,1377

sw.c,492
  int len;8,103
  int *chr;chr
9,114
  int *pos;pos
10,126
  double *score;score
11,138
} SERIES;12,155
  int start;15,183
  int end;16,196
  double score;17,207
} SEGMENT;18,223
  int idx;21,252
  double score;22,263
} IDX;23,279
SERIES *new_series(new_series
25,287
SERIES *read_series(read_series
44,851
SEGMENT *find_segments(find_segments
65,1413
int max_segment 81,1865
int idx_cmp(123,2877
double get_threshold(129,2995
double get_offset(169,3955
int main(184,4349