Settings:
  Output files: "Bur_0_R2//tmp/segment_juncs.*.ebwt"
  Line rate: 6 (line is 64 bytes)
  Lines per side: 1 (side is 64 bytes)
  Offset rate: 5 (one in 32)
  FTable chars: 10
  Strings: unpacked
  Max bucket size: default
  Max bucket size, sqrt multiplier: default
  Max bucket size, len divisor: 4
  Difference-cover sample period: 1024
  Endianness: little
  Actual local endianness: little
  Sanity checking: disabled
  Assertions: disabled
  Random seed: 0
  Sizeofs: void*:8, int:4, long:8, size_t:8
Input files DNA, FASTA:
  Bur_0_R2//tmp/segment_juncs.fa
Reading reference sizes
  Time reading reference sizes: 00:00:02
Calculating joined length
Writing header
Reserving space for joined string
Joining reference sequences
  Time to join reference sequences: 00:00:04
bmax according to bmaxDivN setting: 27840603
Using parameters --bmax 20880453 --dcv 1024
  Doing ahead-of-time memory usage test
  Passed!  Constructing with these parameters: --bmax 20880453 --dcv 1024
Constructing suffix-array element generator
Building DifferenceCoverSample
  Building sPrime
  Building sPrimeOrder
  V-Sorting samples
  V-Sorting samples time: 00:00:03
  Allocating rank array
  Ranking v-sort output
  Ranking v-sort output time: 00:00:00
  Invoking Larsson-Sadakane on ranks
  Invoking Larsson-Sadakane on ranks time: 00:00:01
  Sanity-checking and returning
Building samples
Reserving space for 12 sample suffixes
Generating random suffixes
QSorting 12 sample offsets, eliminating duplicates
QSorting sample offsets, eliminating duplicates time: 00:00:00
Multikey QSorting 12 samples
  (Using difference cover)
  Multikey QSorting samples time: 00:00:00
Calculating bucket sizes
  Binary sorting into buckets
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  Binary sorting into buckets time: 00:00:08
Splitting and merging
  Splitting and merging time: 00:00:00
Split 2, merged 6; iterating...
  Binary sorting into buckets
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  Binary sorting into buckets time: 00:00:06
Splitting and merging
  Splitting and merging time: 00:00:00
Avg bucket size: 1.59089e+07 (target: 20880452)
Converting suffix-array elements to index image
Allocating ftab, absorbFtab
Entering Ebwt loop
Getting block 1 of 7
  Reserving size (20880453) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:02
  Sorting block of length 6976402
  (Using difference cover)
  Sorting block time: 00:00:02
Returning block of 6976403
Getting block 2 of 7
  Reserving size (20880453) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
  10%
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  Block accumulator loop time: 00:00:02
  Sorting block of length 19250672
  (Using difference cover)
  Sorting block time: 00:00:08
Returning block of 19250673
Getting block 3 of 7
  Reserving size (20880453) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:02
  Sorting block of length 19349352
  (Using difference cover)
  Sorting block time: 00:00:08
Returning block of 19349353
Getting block 4 of 7
  Reserving size (20880453) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:02
  Sorting block of length 20276170
  (Using difference cover)
  Sorting block time: 00:00:08
Returning block of 20276171
Getting block 5 of 7
  Reserving size (20880453) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:03
  Sorting block of length 13687331
  (Using difference cover)
  Sorting block time: 00:00:05
Returning block of 13687332
Getting block 6 of 7
  Reserving size (20880453) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:02
  Sorting block of length 16515932
  (Using difference cover)
  Sorting block time: 00:00:06
Returning block of 16515933
Getting block 7 of 7
  Reserving size (20880453) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:01
  Sorting block of length 15306548
  (Using difference cover)
  Sorting block time: 00:00:06
Returning block of 15306549
Exited Ebwt loop
fchr[A]: 0
fchr[C]: 32318351
fchr[G]: 55409518
fchr[T]: 78851009
fchr[$]: 111362413
Exiting Ebwt::buildToDisk()
Returning from initFromVector
Wrote 198032935 bytes to primary EBWT file: Bur_0_R2//tmp/segment_juncs.1.ebwt
Wrote 13920308 bytes to secondary EBWT file: Bur_0_R2//tmp/segment_juncs.2.ebwt
Re-opening _in1 and _in2 as input streams
Returning from Ebwt constructor
Headers:
    len: 111362413
    bwtLen: 111362414
    sz: 27840604
    bwtSz: 27840604
    lineRate: 6
    linesPerSide: 1
    offRate: 5
    offMask: 0xffffffe0
    isaRate: -1
    isaMask: 0xffffffff
    ftabChars: 10
    eftabLen: 20
    eftabSz: 80
    ftabLen: 1048577
    ftabSz: 4194308
    offsLen: 3480076
    offsSz: 13920304
    isaLen: 0
    isaSz: 0
    lineSz: 64
    sideSz: 64
    sideBwtSz: 56
    sideBwtLen: 224
    numSidePairs: 248577
    numSides: 497154
    numLines: 497154
    ebwtTotLen: 31817856
    ebwtTotSz: 31817856
    reverse: 0
Total time for call to driver() for forward index: 00:01:35
Reading reference sizes
  Time reading reference sizes: 00:00:01
Calculating joined length
Writing header
Reserving space for joined string
Joining reference sequences
  Time to join reference sequences: 00:00:04
bmax according to bmaxDivN setting: 27840603
Using parameters --bmax 20880453 --dcv 1024
  Doing ahead-of-time memory usage test
  Passed!  Constructing with these parameters: --bmax 20880453 --dcv 1024
Constructing suffix-array element generator
Building DifferenceCoverSample
  Building sPrime
  Building sPrimeOrder
  V-Sorting samples
  V-Sorting samples time: 00:00:03
  Allocating rank array
  Ranking v-sort output
  Ranking v-sort output time: 00:00:00
  Invoking Larsson-Sadakane on ranks
  Invoking Larsson-Sadakane on ranks time: 00:00:02
  Sanity-checking and returning
Building samples
Reserving space for 12 sample suffixes
Generating random suffixes
QSorting 12 sample offsets, eliminating duplicates
QSorting sample offsets, eliminating duplicates time: 00:00:00
Multikey QSorting 12 samples
  (Using difference cover)
  Multikey QSorting samples time: 00:00:00
Calculating bucket sizes
  Binary sorting into buckets
  10%
  20%
  30%
  40%
  50%
  60%
  70%
  80%
  90%
  100%
  Binary sorting into buckets time: 00:00:07
Splitting and merging
  Splitting and merging time: 00:00:00
Split 1, merged 6; iterating...
  Binary sorting into buckets
  10%
  20%
  30%
  40%
  50%
  60%
  70%
  80%
  90%
  100%
  Binary sorting into buckets time: 00:00:06
Splitting and merging
  Splitting and merging time: 00:00:00
Split 1, merged 1; iterating...
  Binary sorting into buckets
  10%
  20%
  30%
  40%
  50%
  60%
  70%
  80%
  90%
  100%
  Binary sorting into buckets time: 00:00:05
Splitting and merging
  Splitting and merging time: 00:00:00
Avg bucket size: 1.59089e+07 (target: 20880452)
Converting suffix-array elements to index image
Allocating ftab, absorbFtab
Entering Ebwt loop
Getting block 1 of 7
  Reserving size (20880453) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:02
  Sorting block of length 14882748
  (Using difference cover)
  Sorting block time: 00:00:06
Returning block of 14882749
Getting block 2 of 7
  Reserving size (20880453) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:02
  Sorting block of length 6663504
  (Using difference cover)
  Sorting block time: 00:00:02
Returning block of 6663505
Getting block 3 of 7
  Reserving size (20880453) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
  10%
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  100%
  Block accumulator loop time: 00:00:02
  Sorting block of length 19862395
  (Using difference cover)
  Sorting block time: 00:00:08
Returning block of 19862396
Getting block 4 of 7
  Reserving size (20880453) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:02
  Sorting block of length 18391279
  (Using difference cover)
  Sorting block time: 00:00:08
Returning block of 18391280
Getting block 5 of 7
  Reserving size (20880453) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:02
  Sorting block of length 19486536
  (Using difference cover)
  Sorting block time: 00:00:07
Returning block of 19486537
Getting block 6 of 7
  Reserving size (20880453) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
  10%
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  Block accumulator loop time: 00:00:03
  Sorting block of length 17678423
  (Using difference cover)
  Sorting block time: 00:00:08
Returning block of 17678424
Getting block 7 of 7
  Reserving size (20880453) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:02
  Sorting block of length 14397522
  (Using difference cover)
  Sorting block time: 00:00:06
Returning block of 14397523
Exited Ebwt loop
fchr[A]: 0
fchr[C]: 32318351
fchr[G]: 55409518
fchr[T]: 78851009
fchr[$]: 111362413
Exiting Ebwt::buildToDisk()
Returning from initFromVector
Wrote 198032935 bytes to primary EBWT file: Bur_0_R2//tmp/segment_juncs.rev.1.ebwt
Wrote 13920308 bytes to secondary EBWT file: Bur_0_R2//tmp/segment_juncs.rev.2.ebwt
Re-opening _in1 and _in2 as input streams
Returning from Ebwt constructor
Headers:
    len: 111362413
    bwtLen: 111362414
    sz: 27840604
    bwtSz: 27840604
    lineRate: 6
    linesPerSide: 1
    offRate: 5
    offMask: 0xffffffe0
    isaRate: -1
    isaMask: 0xffffffff
    ftabChars: 10
    eftabLen: 20
    eftabSz: 80
    ftabLen: 1048577
    ftabSz: 4194308
    offsLen: 3480076
    offsSz: 13920304
    isaLen: 0
    isaSz: 0
    lineSz: 64
    sideSz: 64
    sideBwtSz: 56
    sideBwtLen: 224
    numSidePairs: 248577
    numSides: 497154
    numLines: 497154
    ebwtTotLen: 31817856
    ebwtTotSz: 31817856
    reverse: 0
Total time for backward call to driver() for mirror index: 00:01:42