Settings:
  Output files: "Can_0_R2//tmp/segment_juncs.*.ebwt"
  Line rate: 6 (line is 64 bytes)
  Lines per side: 1 (side is 64 bytes)
  Offset rate: 5 (one in 32)
  FTable chars: 10
  Strings: unpacked
  Max bucket size: default
  Max bucket size, sqrt multiplier: default
  Max bucket size, len divisor: 4
  Difference-cover sample period: 1024
  Endianness: little
  Actual local endianness: little
  Sanity checking: disabled
  Assertions: disabled
  Random seed: 0
  Sizeofs: void*:8, int:4, long:8, size_t:8
Input files DNA, FASTA:
  Can_0_R2//tmp/segment_juncs.fa
Reading reference sizes
  Time reading reference sizes: 00:00:01
Calculating joined length
Writing header
Reserving space for joined string
Joining reference sequences
  Time to join reference sequences: 00:00:03
bmax according to bmaxDivN setting: 26072560
Using parameters --bmax 19554420 --dcv 1024
  Doing ahead-of-time memory usage test
  Passed!  Constructing with these parameters: --bmax 19554420 --dcv 1024
Constructing suffix-array element generator
Building DifferenceCoverSample
  Building sPrime
  Building sPrimeOrder
  V-Sorting samples
  V-Sorting samples time: 00:00:02
  Allocating rank array
  Ranking v-sort output
  Ranking v-sort output time: 00:00:01
  Invoking Larsson-Sadakane on ranks
  Invoking Larsson-Sadakane on ranks time: 00:00:01
  Sanity-checking and returning
Building samples
Reserving space for 12 sample suffixes
Generating random suffixes
QSorting 12 sample offsets, eliminating duplicates
QSorting sample offsets, eliminating duplicates time: 00:00:00
Multikey QSorting 12 samples
  (Using difference cover)
  Multikey QSorting samples time: 00:00:00
Calculating bucket sizes
  Binary sorting into buckets
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  Binary sorting into buckets time: 00:00:05
Splitting and merging
  Splitting and merging time: 00:00:00
Split 1, merged 6; iterating...
  Binary sorting into buckets
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  Binary sorting into buckets time: 00:00:04
Splitting and merging
  Splitting and merging time: 00:00:00
Avg bucket size: 1.48986e+07 (target: 19554419)
Converting suffix-array elements to index image
Allocating ftab, absorbFtab
Entering Ebwt loop
Getting block 1 of 7
  Reserving size (19554420) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:01
  Sorting block of length 17800635
  (Using difference cover)
  Sorting block time: 00:00:06
Returning block of 17800636
Getting block 2 of 7
  Reserving size (19554420) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:02
  Sorting block of length 14887913
  (Using difference cover)
  Sorting block time: 00:00:05
Returning block of 14887914
Getting block 3 of 7
  Reserving size (19554420) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:02
  Sorting block of length 9342219
  (Using difference cover)
  Sorting block time: 00:00:03
Returning block of 9342220
Getting block 4 of 7
  Reserving size (19554420) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:02
  Sorting block of length 18240890
  (Using difference cover)
  Sorting block time: 00:00:06
Returning block of 18240891
Getting block 5 of 7
  Reserving size (19554420) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:02
  Sorting block of length 15117251
  (Using difference cover)
  Sorting block time: 00:00:05
Returning block of 15117252
Getting block 6 of 7
  Reserving size (19554420) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:01
  Sorting block of length 15287153
  (Using difference cover)
  Sorting block time: 00:00:06
Returning block of 15287154
Getting block 7 of 7
  Reserving size (19554420) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:01
  Sorting block of length 13614176
  (Using difference cover)
  Sorting block time: 00:00:05
Returning block of 13614177
Exited Ebwt loop
fchr[A]: 0
fchr[C]: 30296776
fchr[G]: 51974199
fchr[T]: 73926671
fchr[$]: 104290243
Exiting Ebwt::buildToDisk()
Returning from initFromVector
Wrote 185658207 bytes to primary EBWT file: Can_0_R2//tmp/segment_juncs.1.ebwt
Wrote 13036288 bytes to secondary EBWT file: Can_0_R2//tmp/segment_juncs.2.ebwt
Re-opening _in1 and _in2 as input streams
Returning from Ebwt constructor
Headers:
    len: 104290243
    bwtLen: 104290244
    sz: 26072561
    bwtSz: 26072561
    lineRate: 6
    linesPerSide: 1
    offRate: 5
    offMask: 0xffffffe0
    isaRate: -1
    isaMask: 0xffffffff
    ftabChars: 10
    eftabLen: 20
    eftabSz: 80
    ftabLen: 1048577
    ftabSz: 4194308
    offsLen: 3259071
    offsSz: 13036284
    isaLen: 0
    isaSz: 0
    lineSz: 64
    sideSz: 64
    sideBwtSz: 56
    sideBwtLen: 224
    numSidePairs: 232791
    numSides: 465582
    numLines: 465582
    ebwtTotLen: 29797248
    ebwtTotSz: 29797248
    reverse: 0
Total time for call to driver() for forward index: 00:01:13
Reading reference sizes
  Time reading reference sizes: 00:00:01
Calculating joined length
Writing header
Reserving space for joined string
Joining reference sequences
  Time to join reference sequences: 00:00:03
bmax according to bmaxDivN setting: 26072560
Using parameters --bmax 19554420 --dcv 1024
  Doing ahead-of-time memory usage test
  Passed!  Constructing with these parameters: --bmax 19554420 --dcv 1024
Constructing suffix-array element generator
Building DifferenceCoverSample
  Building sPrime
  Building sPrimeOrder
  V-Sorting samples
  V-Sorting samples time: 00:00:02
  Allocating rank array
  Ranking v-sort output
  Ranking v-sort output time: 00:00:00
  Invoking Larsson-Sadakane on ranks
  Invoking Larsson-Sadakane on ranks time: 00:00:01
  Sanity-checking and returning
Building samples
Reserving space for 12 sample suffixes
Generating random suffixes
QSorting 12 sample offsets, eliminating duplicates
QSorting sample offsets, eliminating duplicates time: 00:00:00
Multikey QSorting 12 samples
  (Using difference cover)
  Multikey QSorting samples time: 00:00:00
Calculating bucket sizes
  Binary sorting into buckets
  10%
  20%
  30%
  40%
  50%
  60%
  70%
  80%
  90%
  100%
  Binary sorting into buckets time: 00:00:05
Splitting and merging
  Splitting and merging time: 00:00:00
Split 1, merged 6; iterating...
  Binary sorting into buckets
  10%
  20%
  30%
  40%
  50%
  60%
  70%
  80%
  90%
  100%
  Binary sorting into buckets time: 00:00:04
Splitting and merging
  Splitting and merging time: 00:00:00
Avg bucket size: 1.30363e+07 (target: 19554419)
Converting suffix-array elements to index image
Allocating ftab, absorbFtab
Entering Ebwt loop
Getting block 1 of 8
  Reserving size (19554420) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:02
  Sorting block of length 11067194
  (Using difference cover)
  Sorting block time: 00:00:03
Returning block of 11067195
Getting block 2 of 8
  Reserving size (19554420) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:02
  Sorting block of length 9734848
  (Using difference cover)
  Sorting block time: 00:00:03
Returning block of 9734849
Getting block 3 of 8
  Reserving size (19554420) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:02
  Sorting block of length 12203392
  (Using difference cover)
  Sorting block time: 00:00:04
Returning block of 12203393
Getting block 4 of 8
  Reserving size (19554420) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:01
  Sorting block of length 16522585
  (Using difference cover)
  Sorting block time: 00:00:06
Returning block of 16522586
Getting block 5 of 8
  Reserving size (19554420) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:02
  Sorting block of length 14917724
  (Using difference cover)
  Sorting block time: 00:00:05
Returning block of 14917725
Getting block 6 of 8
  Reserving size (19554420) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:02
  Sorting block of length 10505603
  (Using difference cover)
  Sorting block time: 00:00:03
Returning block of 10505604
Getting block 7 of 8
  Reserving size (19554420) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:02
  Sorting block of length 17113087
  (Using difference cover)
  Sorting block time: 00:00:05
Returning block of 17113088
Getting block 8 of 8
  Reserving size (19554420) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:01
  Sorting block of length 12225803
  (Using difference cover)
  Sorting block time: 00:00:04
Returning block of 12225804
Exited Ebwt loop
fchr[A]: 0
fchr[C]: 30296776
fchr[G]: 51974199
fchr[T]: 73926671
fchr[$]: 104290243
Exiting Ebwt::buildToDisk()
Returning from initFromVector
Wrote 185658207 bytes to primary EBWT file: Can_0_R2//tmp/segment_juncs.rev.1.ebwt
Wrote 13036288 bytes to secondary EBWT file: Can_0_R2//tmp/segment_juncs.rev.2.ebwt
Re-opening _in1 and _in2 as input streams
Returning from Ebwt constructor
Headers:
    len: 104290243
    bwtLen: 104290244
    sz: 26072561
    bwtSz: 26072561
    lineRate: 6
    linesPerSide: 1
    offRate: 5
    offMask: 0xffffffe0
    isaRate: -1
    isaMask: 0xffffffff
    ftabChars: 10
    eftabLen: 20
    eftabSz: 80
    ftabLen: 1048577
    ftabSz: 4194308
    offsLen: 3259071
    offsSz: 13036284
    isaLen: 0
    isaSz: 0
    lineSz: 64
    sideSz: 64
    sideBwtSz: 56
    sideBwtLen: 224
    numSidePairs: 232791
    numSides: 465582
    numLines: 465582
    ebwtTotLen: 29797248
    ebwtTotSz: 29797248
    reverse: 0
Total time for backward call to driver() for mirror index: 00:01:12