long_spanning_reads v1.2.0 (1752)
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Opening Tsu_0_R1//tmp/TAIR10_GFF3_genes_transposons.juncs for reading
Opening Tsu_0_R1//tmp/segment.juncs for reading
Opening /dev/null for reading
Opening /dev/null for reading
Opening Tsu_0_R1//tmp/left_kept_reads_seg1.bwtout for reading
Opening Tsu_0_R1//tmp/left_kept_reads_seg2.bwtout for reading
Opening Tsu_0_R1//tmp/left_kept_reads_seg3.bwtout for reading
Opening Tsu_0_R1//tmp/left_kept_reads_seg1_to_spliced.bwtout for reading
Opening Tsu_0_R1//tmp/left_kept_reads_seg2_to_spliced.bwtout for reading
Opening Tsu_0_R1//tmp/left_kept_reads_seg3_to_spliced.bwtout for reading
Loading reference sequences...
Loading spliced hits...done
Loading junctions...done
Loading deletions...done