Settings:
  Output files: "Ws_0_R1//tmp/segment_juncs.*.ebwt"
  Line rate: 6 (line is 64 bytes)
  Lines per side: 1 (side is 64 bytes)
  Offset rate: 5 (one in 32)
  FTable chars: 10
  Strings: unpacked
  Max bucket size: default
  Max bucket size, sqrt multiplier: default
  Max bucket size, len divisor: 4
  Difference-cover sample period: 1024
  Endianness: little
  Actual local endianness: little
  Sanity checking: disabled
  Assertions: disabled
  Random seed: 0
  Sizeofs: void*:8, int:4, long:8, size_t:8
Input files DNA, FASTA:
  Ws_0_R1//tmp/segment_juncs.fa
Reading reference sizes
  Time reading reference sizes: 00:00:05
Calculating joined length
Writing header
Reserving space for joined string
Joining reference sequences
  Time to join reference sequences: 00:00:07
bmax according to bmaxDivN setting: 30240761
Using parameters --bmax 22680571 --dcv 1024
  Doing ahead-of-time memory usage test
  Passed!  Constructing with these parameters: --bmax 22680571 --dcv 1024
Constructing suffix-array element generator
Building DifferenceCoverSample
  Building sPrime
  Building sPrimeOrder
  V-Sorting samples
  V-Sorting samples time: 00:00:06
  Allocating rank array
  Ranking v-sort output
  Ranking v-sort output time: 00:00:02
  Invoking Larsson-Sadakane on ranks
  Invoking Larsson-Sadakane on ranks time: 00:00:03
  Sanity-checking and returning
Building samples
Reserving space for 12 sample suffixes
Generating random suffixes
QSorting 12 sample offsets, eliminating duplicates
QSorting sample offsets, eliminating duplicates time: 00:00:00
Multikey QSorting 12 samples
  (Using difference cover)
  Multikey QSorting samples time: 00:00:00
Calculating bucket sizes
  Binary sorting into buckets
  10%
  20%
  30%
  40%
  50%
  60%
  70%
  80%
  90%
  100%
  Binary sorting into buckets time: 00:00:21
Splitting and merging
  Splitting and merging time: 00:00:00
Split 1, merged 6; iterating...
  Binary sorting into buckets
  10%
  20%
  30%
  40%
  50%
  60%
  70%
  80%
  90%
  100%
  Binary sorting into buckets time: 00:00:15
Splitting and merging
  Splitting and merging time: 00:00:00
Avg bucket size: 1.72804e+07 (target: 22680570)
Converting suffix-array elements to index image
Allocating ftab, absorbFtab
Entering Ebwt loop
Getting block 1 of 7
  Reserving size (22680571) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
  10%
  20%
  30%
  40%
  50%
  60%
  70%
  80%
  90%
  100%
  Block accumulator loop time: 00:00:05
  Sorting block of length 16164768
  (Using difference cover)
  Sorting block time: 00:00:11
Returning block of 16164769
Getting block 2 of 7
  Reserving size (22680571) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
  10%
  20%
  30%
  40%
  50%
  60%
  70%
  80%
  90%
  100%
  Block accumulator loop time: 00:00:06
  Sorting block of length 20309508
  (Using difference cover)
  Sorting block time: 00:00:23
Returning block of 20309509
Getting block 3 of 7
  Reserving size (22680571) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
  10%
  20%
  30%
  40%
  50%
  60%
  70%
  80%
  90%
  100%
  Block accumulator loop time: 00:00:06
  Sorting block of length 21790955
  (Using difference cover)
  Sorting block time: 00:00:22
Returning block of 21790956
Getting block 4 of 7
  Reserving size (22680571) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
  10%
  20%
  30%
  40%
  50%
  60%
  70%
  80%
  90%
  100%
  Block accumulator loop time: 00:00:06
  Sorting block of length 19393368
  (Using difference cover)
  Sorting block time: 00:00:17
Returning block of 19393369
Getting block 5 of 7
  Reserving size (22680571) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
  10%
  20%
  30%
  40%
  50%
  60%
  70%
  80%
  90%
  100%
  Block accumulator loop time: 00:00:05
  Sorting block of length 15437764
  (Using difference cover)
  Sorting block time: 00:00:10
Returning block of 15437765
Getting block 6 of 7
  Reserving size (22680571) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
  10%
  20%
  30%
  40%
  50%
  60%
  70%
  80%
  90%
  100%
  Block accumulator loop time: 00:00:06
  Sorting block of length 19704124
  (Using difference cover)
  Sorting block time: 00:00:13
Returning block of 19704125
Getting block 7 of 7
  Reserving size (22680571) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
  10%
  20%
  30%
  40%
  50%
  60%
  70%
  80%
  90%
  100%
  Block accumulator loop time: 00:00:02
  Sorting block of length 8162553
  (Using difference cover)
  Sorting block time: 00:00:05
Returning block of 8162554
Exited Ebwt loop
fchr[A]: 0
fchr[C]: 35203685
fchr[G]: 60298195
fchr[T]: 85638682
fchr[$]: 120963046
Exiting Ebwt::buildToDisk()
Returning from initFromVector
Wrote 214708646 bytes to primary EBWT file: Ws_0_R1//tmp/segment_juncs.1.ebwt
Wrote 15120388 bytes to secondary EBWT file: Ws_0_R1//tmp/segment_juncs.2.ebwt
Re-opening _in1 and _in2 as input streams
Returning from Ebwt constructor
Headers:
    len: 120963046
    bwtLen: 120963047
    sz: 30240762
    bwtSz: 30240762
    lineRate: 6
    linesPerSide: 1
    offRate: 5
    offMask: 0xffffffe0
    isaRate: -1
    isaMask: 0xffffffff
    ftabChars: 10
    eftabLen: 20
    eftabSz: 80
    ftabLen: 1048577
    ftabSz: 4194308
    offsLen: 3780096
    offsSz: 15120384
    isaLen: 0
    isaSz: 0
    lineSz: 64
    sideSz: 64
    sideBwtSz: 56
    sideBwtLen: 224
    numSidePairs: 270007
    numSides: 540014
    numLines: 540014
    ebwtTotLen: 34560896
    ebwtTotSz: 34560896
    reverse: 0
Total time for call to driver() for forward index: 00:03:36
Reading reference sizes
  Time reading reference sizes: 00:00:03
Calculating joined length
Writing header
Reserving space for joined string
Joining reference sequences
  Time to join reference sequences: 00:00:06
bmax according to bmaxDivN setting: 30240761
Using parameters --bmax 22680571 --dcv 1024
  Doing ahead-of-time memory usage test
  Passed!  Constructing with these parameters: --bmax 22680571 --dcv 1024
Constructing suffix-array element generator
Building DifferenceCoverSample
  Building sPrime
  Building sPrimeOrder
  V-Sorting samples
  V-Sorting samples time: 00:00:04
  Allocating rank array
  Ranking v-sort output
  Ranking v-sort output time: 00:00:01
  Invoking Larsson-Sadakane on ranks
  Invoking Larsson-Sadakane on ranks time: 00:00:02
  Sanity-checking and returning
Building samples
Reserving space for 12 sample suffixes
Generating random suffixes
QSorting 12 sample offsets, eliminating duplicates
QSorting sample offsets, eliminating duplicates time: 00:00:00
Multikey QSorting 12 samples
  (Using difference cover)
  Multikey QSorting samples time: 00:00:00
Calculating bucket sizes
  Binary sorting into buckets
  10%
  20%
  30%
  40%
  50%
  60%
  70%
  80%
  90%
  100%
  Binary sorting into buckets time: 00:00:09
Splitting and merging
  Splitting and merging time: 00:00:00
Split 1, merged 6; iterating...
  Binary sorting into buckets
  10%
  20%
  30%
  40%
  50%
  60%
  70%
  80%
  90%
  100%
  Binary sorting into buckets time: 00:00:08
Splitting and merging
  Splitting and merging time: 00:00:00
Split 1, merged 1; iterating...
  Binary sorting into buckets
  10%
  20%
  30%
  40%
  50%
  60%
  70%
  80%
  90%
  100%
  Binary sorting into buckets time: 00:00:07
Splitting and merging
  Splitting and merging time: 00:00:00
Avg bucket size: 1.51204e+07 (target: 22680570)
Converting suffix-array elements to index image
Allocating ftab, absorbFtab
Entering Ebwt loop
Getting block 1 of 8
  Reserving size (22680571) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
  10%
  20%
  30%
  40%
  50%
  60%
  70%
  80%
  90%
  100%
  Block accumulator loop time: 00:00:02
  Sorting block of length 19813416
  (Using difference cover)
  Sorting block time: 00:00:10
Returning block of 19813417
Getting block 2 of 8
  Reserving size (22680571) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
  10%
  20%
  30%
  40%
  50%
  60%
  70%
  80%
  90%
  100%
  Block accumulator loop time: 00:00:01
  Sorting block of length 10311172
  (Using difference cover)
  Sorting block time: 00:00:07
Returning block of 10311173
Getting block 3 of 8
  Reserving size (22680571) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
  10%
  20%
  30%
  40%
  50%
  60%
  70%
  80%
  90%
  100%
  Block accumulator loop time: 00:00:03
  Sorting block of length 21954074
  (Using difference cover)
  Sorting block time: 00:00:13
Returning block of 21954075
Getting block 4 of 8
  Reserving size (22680571) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
  10%
  20%
  30%
  40%
  50%
  60%
  70%
  80%
  90%
  100%
  Block accumulator loop time: 00:00:03
  Sorting block of length 11957228
  (Using difference cover)
  Sorting block time: 00:00:07
Returning block of 11957229
Getting block 5 of 8
  Reserving size (22680571) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
  10%
  20%
  30%
  40%
  50%
  60%
  70%
  80%
  90%
  100%
  Block accumulator loop time: 00:00:02
  Sorting block of length 16668315
  (Using difference cover)
  Sorting block time: 00:00:08
Returning block of 16668316
Getting block 6 of 8
  Reserving size (22680571) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
  10%
  20%
  30%
  40%
  50%
  60%
  70%
  80%
  90%
  100%
  Block accumulator loop time: 00:00:03
  Sorting block of length 16521415
  (Using difference cover)
  Sorting block time: 00:00:13
Returning block of 16521416
Getting block 7 of 8
  Reserving size (22680571) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
  10%
  20%
  30%
  40%
  50%
  60%
  70%
  80%
  90%
  100%
  Block accumulator loop time: 00:00:04
  Sorting block of length 6989123
  (Using difference cover)
  Sorting block time: 00:00:05
Returning block of 6989124
Getting block 8 of 8
  Reserving size (22680571) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
  10%
  20%
  30%
  40%
  50%
  60%
  70%
  80%
  90%
  100%
  Block accumulator loop time: 00:00:03
  Sorting block of length 16748296
  (Using difference cover)
  Sorting block time: 00:00:09
Returning block of 16748297
Exited Ebwt loop
fchr[A]: 0
fchr[C]: 35203685
fchr[G]: 60298195
fchr[T]: 85638682
fchr[$]: 120963046
Exiting Ebwt::buildToDisk()
Returning from initFromVector
Wrote 214708646 bytes to primary EBWT file: Ws_0_R1//tmp/segment_juncs.rev.1.ebwt
Wrote 15120388 bytes to secondary EBWT file: Ws_0_R1//tmp/segment_juncs.rev.2.ebwt
Re-opening _in1 and _in2 as input streams
Returning from Ebwt constructor
Headers:
    len: 120963046
    bwtLen: 120963047
    sz: 30240762
    bwtSz: 30240762
    lineRate: 6
    linesPerSide: 1
    offRate: 5
    offMask: 0xffffffe0
    isaRate: -1
    isaMask: 0xffffffff
    ftabChars: 10
    eftabLen: 20
    eftabSz: 80
    ftabLen: 1048577
    ftabSz: 4194308
    offsLen: 3780096
    offsSz: 15120384
    isaLen: 0
    isaSz: 0
    lineSz: 64
    sideSz: 64
    sideBwtSz: 56
    sideBwtLen: 224
    numSidePairs: 270007
    numSides: 540014
    numLines: 540014
    ebwtTotLen: 34560896
    ebwtTotSz: 34560896
    reverse: 0
Total time for backward call to driver() for mirror index: 00:02:35