Settings:
  Output files: "Ws_0_R2//tmp/segment_juncs.*.ebwt"
  Line rate: 6 (line is 64 bytes)
  Lines per side: 1 (side is 64 bytes)
  Offset rate: 5 (one in 32)
  FTable chars: 10
  Strings: unpacked
  Max bucket size: default
  Max bucket size, sqrt multiplier: default
  Max bucket size, len divisor: 4
  Difference-cover sample period: 1024
  Endianness: little
  Actual local endianness: little
  Sanity checking: disabled
  Assertions: disabled
  Random seed: 0
  Sizeofs: void*:8, int:4, long:8, size_t:8
Input files DNA, FASTA:
  Ws_0_R2//tmp/segment_juncs.fa
Reading reference sizes
  Time reading reference sizes: 00:00:03
Calculating joined length
Writing header
Reserving space for joined string
Joining reference sequences
  Time to join reference sequences: 00:00:04
bmax according to bmaxDivN setting: 16382057
Using parameters --bmax 12286543 --dcv 1024
  Doing ahead-of-time memory usage test
  Passed!  Constructing with these parameters: --bmax 12286543 --dcv 1024
Constructing suffix-array element generator
Building DifferenceCoverSample
  Building sPrime
  Building sPrimeOrder
  V-Sorting samples
  V-Sorting samples time: 00:00:03
  Allocating rank array
  Ranking v-sort output
  Ranking v-sort output time: 00:00:01
  Invoking Larsson-Sadakane on ranks
  Invoking Larsson-Sadakane on ranks time: 00:00:02
  Sanity-checking and returning
Building samples
Reserving space for 12 sample suffixes
Generating random suffixes
QSorting 12 sample offsets, eliminating duplicates
QSorting sample offsets, eliminating duplicates time: 00:00:00
Multikey QSorting 12 samples
  (Using difference cover)
  Multikey QSorting samples time: 00:00:00
Calculating bucket sizes
  Binary sorting into buckets
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  Binary sorting into buckets time: 00:00:07
Splitting and merging
  Splitting and merging time: 00:00:00
Avg bucket size: 9.36118e+06 (target: 12286542)
Converting suffix-array elements to index image
Allocating ftab, absorbFtab
Entering Ebwt loop
Getting block 1 of 7
  Reserving size (12286543) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:02
  Sorting block of length 5557149
  (Using difference cover)
  Sorting block time: 00:00:02
Returning block of 5557150
Getting block 2 of 7
  Reserving size (12286543) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:02
  Sorting block of length 12039979
  (Using difference cover)
  Sorting block time: 00:00:08
Returning block of 12039980
Getting block 3 of 7
  Reserving size (12286543) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:03
  Sorting block of length 9824313
  (Using difference cover)
  Sorting block time: 00:00:05
Returning block of 9824314
Getting block 4 of 7
  Reserving size (12286543) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:03
  Sorting block of length 11270830
  (Using difference cover)
  Sorting block time: 00:00:08
Returning block of 11270831
Getting block 5 of 7
  Reserving size (12286543) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:04
  Sorting block of length 9548463
  (Using difference cover)
  Sorting block time: 00:00:08
Returning block of 9548464
Getting block 6 of 7
  Reserving size (12286543) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:03
  Sorting block of length 11756746
  (Using difference cover)
  Sorting block time: 00:00:06
Returning block of 11756747
Getting block 7 of 7
  Reserving size (12286543) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:02
  Sorting block of length 5530744
  (Using difference cover)
  Sorting block time: 00:00:03
Returning block of 5530745
Exited Ebwt loop
fchr[A]: 0
fchr[C]: 18912687
fchr[G]: 32694515
fchr[T]: 46605318
fchr[$]: 65528230
Exiting Ebwt::buildToDisk()
Returning from initFromVector
Wrote 118213686 bytes to primary EBWT file: Ws_0_R2//tmp/segment_juncs.1.ebwt
Wrote 8191036 bytes to secondary EBWT file: Ws_0_R2//tmp/segment_juncs.2.ebwt
Re-opening _in1 and _in2 as input streams
Returning from Ebwt constructor
Headers:
    len: 65528230
    bwtLen: 65528231
    sz: 16382058
    bwtSz: 16382058
    lineRate: 6
    linesPerSide: 1
    offRate: 5
    offMask: 0xffffffe0
    isaRate: -1
    isaMask: 0xffffffff
    ftabChars: 10
    eftabLen: 20
    eftabSz: 80
    ftabLen: 1048577
    ftabSz: 4194308
    offsLen: 2047758
    offsSz: 8191032
    isaLen: 0
    isaSz: 0
    lineSz: 64
    sideSz: 64
    sideBwtSz: 56
    sideBwtLen: 224
    numSidePairs: 146269
    numSides: 292538
    numLines: 292538
    ebwtTotLen: 18722432
    ebwtTotSz: 18722432
    reverse: 0
Total time for call to driver() for forward index: 00:01:32
Reading reference sizes
  Time reading reference sizes: 00:00:02
Calculating joined length
Writing header
Reserving space for joined string
Joining reference sequences
  Time to join reference sequences: 00:00:06
bmax according to bmaxDivN setting: 16382057
Using parameters --bmax 12286543 --dcv 1024
  Doing ahead-of-time memory usage test
  Passed!  Constructing with these parameters: --bmax 12286543 --dcv 1024
Constructing suffix-array element generator
Building DifferenceCoverSample
  Building sPrime
  Building sPrimeOrder
  V-Sorting samples
  V-Sorting samples time: 00:00:03
  Allocating rank array
  Ranking v-sort output
  Ranking v-sort output time: 00:00:01
  Invoking Larsson-Sadakane on ranks
  Invoking Larsson-Sadakane on ranks time: 00:00:01
  Sanity-checking and returning
Building samples
Reserving space for 12 sample suffixes
Generating random suffixes
QSorting 12 sample offsets, eliminating duplicates
QSorting sample offsets, eliminating duplicates time: 00:00:00
Multikey QSorting 12 samples
  (Using difference cover)
  Multikey QSorting samples time: 00:00:00
Calculating bucket sizes
  Binary sorting into buckets
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  Binary sorting into buckets time: 00:00:06
Splitting and merging
  Splitting and merging time: 00:00:00
Split 1, merged 6; iterating...
  Binary sorting into buckets
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  100%
  Binary sorting into buckets time: 00:00:05
Splitting and merging
  Splitting and merging time: 00:00:00
Avg bucket size: 8.19103e+06 (target: 12286542)
Converting suffix-array elements to index image
Allocating ftab, absorbFtab
Entering Ebwt loop
Getting block 1 of 8
  Reserving size (12286543) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:01
  Sorting block of length 2015564
  (Using difference cover)
  Sorting block time: 00:00:01
Returning block of 2015565
Getting block 2 of 8
  Reserving size (12286543) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:02
  Sorting block of length 11851285
  (Using difference cover)
  Sorting block time: 00:00:06
Returning block of 11851286
Getting block 3 of 8
  Reserving size (12286543) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:03
  Sorting block of length 10839782
  (Using difference cover)
  Sorting block time: 00:00:07
Returning block of 10839783
Getting block 4 of 8
  Reserving size (12286543) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:04
  Sorting block of length 9168544
  (Using difference cover)
  Sorting block time: 00:00:05
Returning block of 9168545
Getting block 5 of 8
  Reserving size (12286543) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:03
  Sorting block of length 6428307
  (Using difference cover)
  Sorting block time: 00:00:04
Returning block of 6428308
Getting block 6 of 8
  Reserving size (12286543) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:02
  Sorting block of length 6704925
  (Using difference cover)
  Sorting block time: 00:00:05
Returning block of 6704926
Getting block 7 of 8
  Reserving size (12286543) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:03
  Sorting block of length 8760357
  (Using difference cover)
  Sorting block time: 00:00:07
Returning block of 8760358
Getting block 8 of 8
  Reserving size (12286543) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:02
  Sorting block of length 9759459
  (Using difference cover)
  Sorting block time: 00:00:06
Returning block of 9759460
Exited Ebwt loop
fchr[A]: 0
fchr[C]: 18912687
fchr[G]: 32694515
fchr[T]: 46605318
fchr[$]: 65528230
Exiting Ebwt::buildToDisk()
Returning from initFromVector
Wrote 118213686 bytes to primary EBWT file: Ws_0_R2//tmp/segment_juncs.rev.1.ebwt
Wrote 8191036 bytes to secondary EBWT file: Ws_0_R2//tmp/segment_juncs.rev.2.ebwt
Re-opening _in1 and _in2 as input streams
Returning from Ebwt constructor
Headers:
    len: 65528230
    bwtLen: 65528231
    sz: 16382058
    bwtSz: 16382058
    lineRate: 6
    linesPerSide: 1
    offRate: 5
    offMask: 0xffffffe0
    isaRate: -1
    isaMask: 0xffffffff
    ftabChars: 10
    eftabLen: 20
    eftabSz: 80
    ftabLen: 1048577
    ftabSz: 4194308
    offsLen: 2047758
    offsSz: 8191032
    isaLen: 0
    isaSz: 0
    lineSz: 64
    sideSz: 64
    sideBwtSz: 56
    sideBwtLen: 224
    numSidePairs: 146269
    numSides: 292538
    numLines: 292538
    ebwtTotLen: 18722432
    ebwtTotSz: 18722432
    reverse: 0
Total time for backward call to driver() for mirror index: 00:01:36