Settings:
  Output files: "Bur_0//tmp/segment_juncs.*.ebwt"
  Line rate: 6 (line is 64 bytes)
  Lines per side: 1 (side is 64 bytes)
  Offset rate: 5 (one in 32)
  FTable chars: 10
  Strings: unpacked
  Max bucket size: default
  Max bucket size, sqrt multiplier: default
  Max bucket size, len divisor: 4
  Difference-cover sample period: 1024
  Endianness: little
  Actual local endianness: little
  Sanity checking: disabled
  Assertions: disabled
  Random seed: 0
  Sizeofs: void*:8, int:4, long:8, size_t:8
Input files DNA, FASTA:
  Bur_0//tmp/segment_juncs.fa
Reading reference sizes
  Time reading reference sizes: 00:00:10
Calculating joined length
Writing header
Reserving space for joined string
Joining reference sequences
  Time to join reference sequences: 00:01:16
bmax according to bmaxDivN setting: 38772139
Using parameters --bmax 29079105 --dcv 1024
  Doing ahead-of-time memory usage test
  Passed!  Constructing with these parameters: --bmax 29079105 --dcv 1024
Constructing suffix-array element generator
Building DifferenceCoverSample
  Building sPrime
  Building sPrimeOrder
  V-Sorting samples
  V-Sorting samples time: 00:00:12
  Allocating rank array
  Ranking v-sort output
  Ranking v-sort output time: 00:00:03
  Invoking Larsson-Sadakane on ranks
  Invoking Larsson-Sadakane on ranks time: 00:00:04
  Sanity-checking and returning
Building samples
Reserving space for 12 sample suffixes
Generating random suffixes
QSorting 12 sample offsets, eliminating duplicates
QSorting sample offsets, eliminating duplicates time: 00:00:00
Multikey QSorting 12 samples
  (Using difference cover)
  Multikey QSorting samples time: 00:00:00
Calculating bucket sizes
  Binary sorting into buckets
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  Binary sorting into buckets time: 00:00:27
Splitting and merging
  Splitting and merging time: 00:00:00
Avg bucket size: 2.21555e+07 (target: 29079104)
Converting suffix-array elements to index image
Allocating ftab, absorbFtab
Entering Ebwt loop
Getting block 1 of 7
  Reserving size (29079105) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:05
  Sorting block of length 18601892
  (Using difference cover)
  Sorting block time: 00:00:20
Returning block of 18601893
Getting block 2 of 7
  Reserving size (29079105) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:07
  Sorting block of length 24977776
  (Using difference cover)
  Sorting block time: 00:00:33
Returning block of 24977777
Getting block 3 of 7
  Reserving size (29079105) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:06
  Sorting block of length 26329898
  (Using difference cover)
  Sorting block time: 00:00:31
Returning block of 26329899
Getting block 4 of 7
  Reserving size (29079105) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:08
  Sorting block of length 24824359
  (Using difference cover)
  Sorting block time: 00:00:32
Returning block of 24824360
Getting block 5 of 7
  Reserving size (29079105) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:06
  Sorting block of length 19636045
  (Using difference cover)
  Sorting block time: 00:00:17
Returning block of 19636046
Getting block 6 of 7
  Reserving size (29079105) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:08
  Sorting block of length 19238193
  (Using difference cover)
  Sorting block time: 00:00:27
Returning block of 19238194
Getting block 7 of 7
  Reserving size (29079105) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:06
  Sorting block of length 21480387
  (Using difference cover)
  Sorting block time: 00:00:26
Returning block of 21480388
Exited Ebwt loop
fchr[A]: 0
fchr[C]: 47651311
fchr[G]: 77493045
fchr[T]: 107503265
fchr[$]: 155088556
Exiting Ebwt::buildToDisk()
Returning from initFromVector
Wrote 274051888 bytes to primary EBWT file: Bur_0//tmp/segment_juncs.1.ebwt
Wrote 19386076 bytes to secondary EBWT file: Bur_0//tmp/segment_juncs.2.ebwt
Re-opening _in1 and _in2 as input streams
Returning from Ebwt constructor
Headers:
    len: 155088556
    bwtLen: 155088557
    sz: 38772139
    bwtSz: 38772140
    lineRate: 6
    linesPerSide: 1
    offRate: 5
    offMask: 0xffffffe0
    isaRate: -1
    isaMask: 0xffffffff
    ftabChars: 10
    eftabLen: 20
    eftabSz: 80
    ftabLen: 1048577
    ftabSz: 4194308
    offsLen: 4846518
    offsSz: 19386072
    isaLen: 0
    isaSz: 0
    lineSz: 64
    sideSz: 64
    sideBwtSz: 56
    sideBwtLen: 224
    numSidePairs: 346180
    numSides: 692360
    numLines: 692360
    ebwtTotLen: 44311040
    ebwtTotSz: 44311040
    reverse: 0
Total time for call to driver() for forward index: 00:06:50
Reading reference sizes
  Time reading reference sizes: 00:00:07
Calculating joined length
Writing header
Reserving space for joined string
Joining reference sequences
  Time to join reference sequences: 00:00:15
bmax according to bmaxDivN setting: 38772139
Using parameters --bmax 29079105 --dcv 1024
  Doing ahead-of-time memory usage test
  Passed!  Constructing with these parameters: --bmax 29079105 --dcv 1024
Constructing suffix-array element generator
Building DifferenceCoverSample
  Building sPrime
  Building sPrimeOrder
  V-Sorting samples
  V-Sorting samples time: 00:00:09
  Allocating rank array
  Ranking v-sort output
  Ranking v-sort output time: 00:00:02
  Invoking Larsson-Sadakane on ranks
  Invoking Larsson-Sadakane on ranks time: 00:00:03
  Sanity-checking and returning
Building samples
Reserving space for 12 sample suffixes
Generating random suffixes
QSorting 12 sample offsets, eliminating duplicates
QSorting sample offsets, eliminating duplicates time: 00:00:00
Multikey QSorting 12 samples
  (Using difference cover)
  Multikey QSorting samples time: 00:00:00
Calculating bucket sizes
  Binary sorting into buckets
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  100%
  Binary sorting into buckets time: 00:00:20
Splitting and merging
  Splitting and merging time: 00:00:00
Split 1, merged 6; iterating...
  Binary sorting into buckets
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  Binary sorting into buckets time: 00:00:14
Splitting and merging
  Splitting and merging time: 00:00:00
Avg bucket size: 1.93861e+07 (target: 29079104)
Converting suffix-array elements to index image
Allocating ftab, absorbFtab
Entering Ebwt loop
Getting block 1 of 8
  Reserving size (29079105) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:04
  Sorting block of length 13742872
  (Using difference cover)
  Sorting block time: 00:00:11
Returning block of 13742873
Getting block 2 of 8
  Reserving size (29079105) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:06
  Sorting block of length 17079074
  (Using difference cover)
  Sorting block time: 00:00:18
Returning block of 17079075
Getting block 3 of 8
  Reserving size (29079105) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:07
  Sorting block of length 27627983
  (Using difference cover)
  Sorting block time: 00:00:28
Returning block of 27627984
Getting block 4 of 8
  Reserving size (29079105) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:06
  Sorting block of length 10621469
  (Using difference cover)
  Sorting block time: 00:00:10
Returning block of 10621470
Getting block 5 of 8
  Reserving size (29079105) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:09
  Sorting block of length 25755618
  (Using difference cover)
  Sorting block time: 00:00:52
Returning block of 25755619
Getting block 6 of 8
  Reserving size (29079105) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:07
  Sorting block of length 11404228
  (Using difference cover)
  Sorting block time: 00:00:11
Returning block of 11404229
Getting block 7 of 8
  Reserving size (29079105) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:11
  Sorting block of length 28152290
  (Using difference cover)
  Sorting block time: 00:00:43
Returning block of 28152291
Getting block 8 of 8
  Reserving size (29079105) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:06
  Sorting block of length 20705015
  (Using difference cover)
  Sorting block time: 00:00:30
Returning block of 20705016
Exited Ebwt loop
fchr[A]: 0
fchr[C]: 47651311
fchr[G]: 77493045
fchr[T]: 107503265
fchr[$]: 155088556
Exiting Ebwt::buildToDisk()
Returning from initFromVector
Wrote 274051888 bytes to primary EBWT file: Bur_0//tmp/segment_juncs.rev.1.ebwt
Wrote 19386076 bytes to secondary EBWT file: Bur_0//tmp/segment_juncs.rev.2.ebwt
Re-opening _in1 and _in2 as input streams
Returning from Ebwt constructor
Headers:
    len: 155088556
    bwtLen: 155088557
    sz: 38772139
    bwtSz: 38772140
    lineRate: 6
    linesPerSide: 1
    offRate: 5
    offMask: 0xffffffe0
    isaRate: -1
    isaMask: 0xffffffff
    ftabChars: 10
    eftabLen: 20
    eftabSz: 80
    ftabLen: 1048577
    ftabSz: 4194308
    offsLen: 4846518
    offsSz: 19386072
    isaLen: 0
    isaSz: 0
    lineSz: 64
    sideSz: 64
    sideBwtSz: 56
    sideBwtLen: 224
    numSidePairs: 346180
    numSides: 692360
    numLines: 692360
    ebwtTotLen: 44311040
    ebwtTotSz: 44311040
    reverse: 0
Total time for backward call to driver() for mirror index: 00:07:59