Settings:
  Output files: "Can_0//tmp/segment_juncs.*.ebwt"
  Line rate: 6 (line is 64 bytes)
  Lines per side: 1 (side is 64 bytes)
  Offset rate: 5 (one in 32)
  FTable chars: 10
  Strings: unpacked
  Max bucket size: default
  Max bucket size, sqrt multiplier: default
  Max bucket size, len divisor: 4
  Difference-cover sample period: 1024
  Endianness: little
  Actual local endianness: little
  Sanity checking: disabled
  Assertions: disabled
  Random seed: 0
  Sizeofs: void*:8, int:4, long:8, size_t:8
Input files DNA, FASTA:
  Can_0//tmp/segment_juncs.fa
Reading reference sizes
  Time reading reference sizes: 00:00:11
Calculating joined length
Writing header
Reserving space for joined string
Joining reference sequences
  Time to join reference sequences: 00:00:18
bmax according to bmaxDivN setting: 42213720
Using parameters --bmax 31660290 --dcv 1024
  Doing ahead-of-time memory usage test
  Passed!  Constructing with these parameters: --bmax 31660290 --dcv 1024
Constructing suffix-array element generator
Building DifferenceCoverSample
  Building sPrime
  Building sPrimeOrder
  V-Sorting samples
  V-Sorting samples time: 00:00:11
  Allocating rank array
  Ranking v-sort output
  Ranking v-sort output time: 00:00:01
  Invoking Larsson-Sadakane on ranks
  Invoking Larsson-Sadakane on ranks time: 00:00:04
  Sanity-checking and returning
Building samples
Reserving space for 12 sample suffixes
Generating random suffixes
QSorting 12 sample offsets, eliminating duplicates
QSorting sample offsets, eliminating duplicates time: 00:00:00
Multikey QSorting 12 samples
  (Using difference cover)
  Multikey QSorting samples time: 00:00:00
Calculating bucket sizes
  Binary sorting into buckets
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  Binary sorting into buckets time: 00:00:26
Splitting and merging
  Splitting and merging time: 00:00:00
Split 1, merged 6; iterating...
  Binary sorting into buckets
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  Binary sorting into buckets time: 00:00:21
Splitting and merging
  Splitting and merging time: 00:00:00
Avg bucket size: 2.11069e+07 (target: 31660289)
Converting suffix-array elements to index image
Allocating ftab, absorbFtab
Entering Ebwt loop
Getting block 1 of 8
  Reserving size (31660290) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:04
  Sorting block of length 14461448
  (Using difference cover)
  Sorting block time: 00:00:13
Returning block of 14461449
Getting block 2 of 8
  Reserving size (31660290) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:05
  Sorting block of length 30380340
  (Using difference cover)
  Sorting block time: 00:00:31
Returning block of 30380341
Getting block 3 of 8
  Reserving size (31660290) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:06
  Sorting block of length 15843055
  (Using difference cover)
  Sorting block time: 00:00:14
Returning block of 15843056
Getting block 4 of 8
  Reserving size (31660290) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:06
  Sorting block of length 30410971
  (Using difference cover)
  Sorting block time: 00:00:34
Returning block of 30410972
Getting block 5 of 8
  Reserving size (31660290) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:07
  Sorting block of length 15099735
  (Using difference cover)
  Sorting block time: 00:00:16
Returning block of 15099736
Getting block 6 of 8
  Reserving size (31660290) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:09
  Sorting block of length 29292561
  (Using difference cover)
  Sorting block time: 00:00:32
Returning block of 29292562
Getting block 7 of 8
  Reserving size (31660290) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:09
  Sorting block of length 23237641
  (Using difference cover)
  Sorting block time: 00:00:23
Returning block of 23237642
Getting block 8 of 8
  Reserving size (31660290) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:06
  Sorting block of length 10129125
  (Using difference cover)
  Sorting block time: 00:00:10
Returning block of 10129126
Exited Ebwt loop
fchr[A]: 0
fchr[C]: 52286788
fchr[G]: 84456993
fchr[T]: 116812075
fchr[$]: 168854883
Exiting Ebwt::buildToDisk()
Returning from initFromVector
Wrote 297989857 bytes to primary EBWT file: Can_0//tmp/segment_juncs.1.ebwt
Wrote 21106868 bytes to secondary EBWT file: Can_0//tmp/segment_juncs.2.ebwt
Re-opening _in1 and _in2 as input streams
Returning from Ebwt constructor
Headers:
    len: 168854883
    bwtLen: 168854884
    sz: 42213721
    bwtSz: 42213721
    lineRate: 6
    linesPerSide: 1
    offRate: 5
    offMask: 0xffffffe0
    isaRate: -1
    isaMask: 0xffffffff
    ftabChars: 10
    eftabLen: 20
    eftabSz: 80
    ftabLen: 1048577
    ftabSz: 4194308
    offsLen: 5276716
    offsSz: 21106864
    isaLen: 0
    isaSz: 0
    lineSz: 64
    sideSz: 64
    sideBwtSz: 56
    sideBwtLen: 224
    numSidePairs: 376909
    numSides: 753818
    numLines: 753818
    ebwtTotLen: 48244352
    ebwtTotSz: 48244352
    reverse: 0
Total time for call to driver() for forward index: 00:06:07
Reading reference sizes
  Time reading reference sizes: 00:00:09
Calculating joined length
Writing header
Reserving space for joined string
Joining reference sequences
  Time to join reference sequences: 00:00:31
bmax according to bmaxDivN setting: 42213720
Using parameters --bmax 31660290 --dcv 1024
  Doing ahead-of-time memory usage test
  Passed!  Constructing with these parameters: --bmax 31660290 --dcv 1024
Constructing suffix-array element generator
Building DifferenceCoverSample
  Building sPrime
  Building sPrimeOrder
  V-Sorting samples
  V-Sorting samples time: 00:00:10
  Allocating rank array
  Ranking v-sort output
  Ranking v-sort output time: 00:00:03
  Invoking Larsson-Sadakane on ranks
  Invoking Larsson-Sadakane on ranks time: 00:00:05
  Sanity-checking and returning
Building samples
Reserving space for 12 sample suffixes
Generating random suffixes
QSorting 12 sample offsets, eliminating duplicates
QSorting sample offsets, eliminating duplicates time: 00:00:00
Multikey QSorting 12 samples
  (Using difference cover)
  Multikey QSorting samples time: 00:00:00
Calculating bucket sizes
  Binary sorting into buckets
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  100%
  Binary sorting into buckets time: 00:00:25
Splitting and merging
  Splitting and merging time: 00:00:00
Split 2, merged 7; iterating...
  Binary sorting into buckets
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  Binary sorting into buckets time: 00:00:17
Splitting and merging
  Splitting and merging time: 00:00:00
Split 2, merged 1; iterating...
  Binary sorting into buckets
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  Binary sorting into buckets time: 00:00:21
Splitting and merging
  Splitting and merging time: 00:00:00
Avg bucket size: 2.11069e+07 (target: 31660289)
Converting suffix-array elements to index image
Allocating ftab, absorbFtab
Entering Ebwt loop
Getting block 1 of 8
  Reserving size (31660290) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:05
  Sorting block of length 20303484
  (Using difference cover)
  Sorting block time: 00:00:24
Returning block of 20303485
Getting block 2 of 8
  Reserving size (31660290) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:11
  Sorting block of length 26324437
  (Using difference cover)
  Sorting block time: 00:00:57
Returning block of 26324438
Getting block 3 of 8
  Reserving size (31660290) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:46
  Sorting block of length 19046526
  (Using difference cover)
  Sorting block time: 00:00:17
Returning block of 19046527
Getting block 4 of 8
  Reserving size (31660290) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:07
  Sorting block of length 31032548
  (Using difference cover)
  Sorting block time: 00:00:40
Returning block of 31032549
Getting block 5 of 8
  Reserving size (31660290) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:08
  Sorting block of length 6776644
  (Using difference cover)
  Sorting block time: 00:00:08
Returning block of 6776645
Getting block 6 of 8
  Reserving size (31660290) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:09
  Sorting block of length 25249159
  (Using difference cover)
  Sorting block time: 00:00:35
Returning block of 25249160
Getting block 7 of 8
  Reserving size (31660290) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:12
  Sorting block of length 9548843
  (Using difference cover)
  Sorting block time: 00:00:17
Returning block of 9548844
Getting block 8 of 8
  Reserving size (31660290) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:07
  Sorting block of length 30573235
  (Using difference cover)
  Sorting block time: 00:00:40
Returning block of 30573236
Exited Ebwt loop
fchr[A]: 0
fchr[C]: 52286788
fchr[G]: 84456993
fchr[T]: 116812075
fchr[$]: 168854883
Exiting Ebwt::buildToDisk()
Returning from initFromVector
Wrote 297989857 bytes to primary EBWT file: Can_0//tmp/segment_juncs.rev.1.ebwt
Wrote 21106868 bytes to secondary EBWT file: Can_0//tmp/segment_juncs.rev.2.ebwt
Re-opening _in1 and _in2 as input streams
Returning from Ebwt constructor
Headers:
    len: 168854883
    bwtLen: 168854884
    sz: 42213721
    bwtSz: 42213721
    lineRate: 6
    linesPerSide: 1
    offRate: 5
    offMask: 0xffffffe0
    isaRate: -1
    isaMask: 0xffffffff
    ftabChars: 10
    eftabLen: 20
    eftabSz: 80
    ftabLen: 1048577
    ftabSz: 4194308
    offsLen: 5276716
    offsSz: 21106864
    isaLen: 0
    isaSz: 0
    lineSz: 64
    sideSz: 64
    sideBwtSz: 56
    sideBwtLen: 224
    numSidePairs: 376909
    numSides: 753818
    numLines: 753818
    ebwtTotLen: 48244352
    ebwtTotSz: 48244352
    reverse: 0
Total time for backward call to driver() for mirror index: 00:10:35