Settings:
  Output files: "Col_0//tmp/segment_juncs.*.ebwt"
  Line rate: 6 (line is 64 bytes)
  Lines per side: 1 (side is 64 bytes)
  Offset rate: 5 (one in 32)
  FTable chars: 10
  Strings: unpacked
  Max bucket size: default
  Max bucket size, sqrt multiplier: default
  Max bucket size, len divisor: 4
  Difference-cover sample period: 1024
  Endianness: little
  Actual local endianness: little
  Sanity checking: disabled
  Assertions: disabled
  Random seed: 0
  Sizeofs: void*:8, int:4, long:8, size_t:8
Input files DNA, FASTA:
  Col_0//tmp/segment_juncs.fa
Reading reference sizes
  Time reading reference sizes: 00:00:11
Calculating joined length
Writing header
Reserving space for joined string
Joining reference sequences
  Time to join reference sequences: 00:00:18
bmax according to bmaxDivN setting: 38799489
Using parameters --bmax 29099617 --dcv 1024
  Doing ahead-of-time memory usage test
  Passed!  Constructing with these parameters: --bmax 29099617 --dcv 1024
Constructing suffix-array element generator
Building DifferenceCoverSample
  Building sPrime
  Building sPrimeOrder
  V-Sorting samples
  V-Sorting samples time: 00:00:15
  Allocating rank array
  Ranking v-sort output
  Ranking v-sort output time: 00:00:03
  Invoking Larsson-Sadakane on ranks
  Invoking Larsson-Sadakane on ranks time: 00:00:05
  Sanity-checking and returning
Building samples
Reserving space for 12 sample suffixes
Generating random suffixes
QSorting 12 sample offsets, eliminating duplicates
QSorting sample offsets, eliminating duplicates time: 00:00:00
Multikey QSorting 12 samples
  (Using difference cover)
  Multikey QSorting samples time: 00:00:00
Calculating bucket sizes
  Binary sorting into buckets
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  Binary sorting into buckets time: 00:00:26
Splitting and merging
  Splitting and merging time: 00:00:00
Split 2, merged 6; iterating...
  Binary sorting into buckets
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  Binary sorting into buckets time: 00:00:25
Splitting and merging
  Splitting and merging time: 00:00:00
Split 2, merged 2; iterating...
  Binary sorting into buckets
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  100%
  Binary sorting into buckets time: 00:00:28
Splitting and merging
  Splitting and merging time: 00:00:00
Avg bucket size: 2.21711e+07 (target: 29099616)
Converting suffix-array elements to index image
Allocating ftab, absorbFtab
Entering Ebwt loop
Getting block 1 of 7
  Reserving size (29099617) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:06
  Sorting block of length 27334314
  (Using difference cover)
  Sorting block time: 00:00:36
Returning block of 27334315
Getting block 2 of 7
  Reserving size (29099617) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:08
  Sorting block of length 19786039
  (Using difference cover)
  Sorting block time: 00:00:25
Returning block of 19786040
Getting block 3 of 7
  Reserving size (29099617) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:07
  Sorting block of length 19918897
  (Using difference cover)
  Sorting block time: 00:00:22
Returning block of 19918898
Getting block 4 of 7
  Reserving size (29099617) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:08
  Sorting block of length 11739239
  (Using difference cover)
  Sorting block time: 00:00:23
Returning block of 11739240
Getting block 5 of 7
  Reserving size (29099617) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:17
  Sorting block of length 27490690
  (Using difference cover)
  Sorting block time: 00:00:36
Returning block of 27490691
Getting block 6 of 7
  Reserving size (29099617) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:05
  Sorting block of length 26778587
  (Using difference cover)
  Sorting block time: 00:00:30
Returning block of 26778588
Getting block 7 of 7
  Reserving size (29099617) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:06
  Sorting block of length 22150186
  (Using difference cover)
  Sorting block time: 00:00:23
Returning block of 22150187
Exited Ebwt loop
fchr[A]: 0
fchr[C]: 47813974
fchr[G]: 77580713
fchr[T]: 107477874
fchr[$]: 155197958
Exiting Ebwt::buildToDisk()
Returning from initFromVector
Wrote 274189457 bytes to primary EBWT file: Col_0//tmp/segment_juncs.1.ebwt
Wrote 19399752 bytes to secondary EBWT file: Col_0//tmp/segment_juncs.2.ebwt
Re-opening _in1 and _in2 as input streams
Returning from Ebwt constructor
Headers:
    len: 155197958
    bwtLen: 155197959
    sz: 38799490
    bwtSz: 38799490
    lineRate: 6
    linesPerSide: 1
    offRate: 5
    offMask: 0xffffffe0
    isaRate: -1
    isaMask: 0xffffffff
    ftabChars: 10
    eftabLen: 20
    eftabSz: 80
    ftabLen: 1048577
    ftabSz: 4194308
    offsLen: 4849937
    offsSz: 19399748
    isaLen: 0
    isaSz: 0
    lineSz: 64
    sideSz: 64
    sideBwtSz: 56
    sideBwtLen: 224
    numSidePairs: 346425
    numSides: 692850
    numLines: 692850
    ebwtTotLen: 44342400
    ebwtTotSz: 44342400
    reverse: 0
Total time for call to driver() for forward index: 00:08:02
Reading reference sizes
  Time reading reference sizes: 00:00:08
Calculating joined length
Writing header
Reserving space for joined string
Joining reference sequences
  Time to join reference sequences: 00:00:13
bmax according to bmaxDivN setting: 38799489
Using parameters --bmax 29099617 --dcv 1024
  Doing ahead-of-time memory usage test
  Passed!  Constructing with these parameters: --bmax 29099617 --dcv 1024
Constructing suffix-array element generator
Building DifferenceCoverSample
  Building sPrime
  Building sPrimeOrder
  V-Sorting samples
  V-Sorting samples time: 00:00:07
  Allocating rank array
  Ranking v-sort output
  Ranking v-sort output time: 00:00:02
  Invoking Larsson-Sadakane on ranks
  Invoking Larsson-Sadakane on ranks time: 00:00:04
  Sanity-checking and returning
Building samples
Reserving space for 12 sample suffixes
Generating random suffixes
QSorting 12 sample offsets, eliminating duplicates
QSorting sample offsets, eliminating duplicates time: 00:00:00
Multikey QSorting 12 samples
  (Using difference cover)
  Multikey QSorting samples time: 00:00:00
Calculating bucket sizes
  Binary sorting into buckets
  10%
  20%
  30%
  40%
  50%
  60%
  70%
  80%
  90%
  100%
  Binary sorting into buckets time: 00:00:18
Splitting and merging
  Splitting and merging time: 00:00:00
Split 2, merged 6; iterating...
  Binary sorting into buckets
  10%
  20%
  30%
  40%
  50%
  60%
  70%
  80%
  90%
  100%
  Binary sorting into buckets time: 00:00:16
Splitting and merging
  Splitting and merging time: 00:00:00
Avg bucket size: 1.93997e+07 (target: 29099616)
Converting suffix-array elements to index image
Allocating ftab, absorbFtab
Entering Ebwt loop
Getting block 1 of 8
  Reserving size (29099617) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:05
  Sorting block of length 13521258
  (Using difference cover)
  Sorting block time: 00:00:11
Returning block of 13521259
Getting block 2 of 8
  Reserving size (29099617) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:06
  Sorting block of length 19239931
  (Using difference cover)
  Sorting block time: 00:00:23
Returning block of 19239932
Getting block 3 of 8
  Reserving size (29099617) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  100%
  Block accumulator loop time: 00:00:07
  Sorting block of length 28630093
  (Using difference cover)
  Sorting block time: 00:00:28
Returning block of 28630094
Getting block 4 of 8
  Reserving size (29099617) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:07
  Sorting block of length 18859055
  (Using difference cover)
  Sorting block time: 00:00:21
Returning block of 18859056
Getting block 5 of 8
  Reserving size (29099617) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:05
  Sorting block of length 10952256
  (Using difference cover)
  Sorting block time: 00:00:12
Returning block of 10952257
Getting block 6 of 8
  Reserving size (29099617) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:08
  Sorting block of length 27467913
  (Using difference cover)
  Sorting block time: 00:00:26
Returning block of 27467914
Getting block 7 of 8
  Reserving size (29099617) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:06
  Sorting block of length 10678152
  (Using difference cover)
  Sorting block time: 00:00:11
Returning block of 10678153
Getting block 8 of 8
  Reserving size (29099617) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:05
  Sorting block of length 25849293
  (Using difference cover)
  Sorting block time: 00:00:22
Returning block of 25849294
Exited Ebwt loop
fchr[A]: 0
fchr[C]: 47813974
fchr[G]: 77580713
fchr[T]: 107477874
fchr[$]: 155197958
Exiting Ebwt::buildToDisk()
Returning from initFromVector
Wrote 274189457 bytes to primary EBWT file: Col_0//tmp/segment_juncs.rev.1.ebwt
Wrote 19399752 bytes to secondary EBWT file: Col_0//tmp/segment_juncs.rev.2.ebwt
Re-opening _in1 and _in2 as input streams
Returning from Ebwt constructor
Headers:
    len: 155197958
    bwtLen: 155197959
    sz: 38799490
    bwtSz: 38799490
    lineRate: 6
    linesPerSide: 1
    offRate: 5
    offMask: 0xffffffe0
    isaRate: -1
    isaMask: 0xffffffff
    ftabChars: 10
    eftabLen: 20
    eftabSz: 80
    ftabLen: 1048577
    ftabSz: 4194308
    offsLen: 4849937
    offsSz: 19399748
    isaLen: 0
    isaSz: 0
    lineSz: 64
    sideSz: 64
    sideBwtSz: 56
    sideBwtLen: 224
    numSidePairs: 346425
    numSides: 692850
    numLines: 692850
    ebwtTotLen: 44342400
    ebwtTotSz: 44342400
    reverse: 0
Total time for backward call to driver() for mirror index: 00:05:36