Settings:
  Output files: "Edi_0//tmp/segment_juncs.*.ebwt"
  Line rate: 6 (line is 64 bytes)
  Lines per side: 1 (side is 64 bytes)
  Offset rate: 5 (one in 32)
  FTable chars: 10
  Strings: unpacked
  Max bucket size: default
  Max bucket size, sqrt multiplier: default
  Max bucket size, len divisor: 4
  Difference-cover sample period: 1024
  Endianness: little
  Actual local endianness: little
  Sanity checking: disabled
  Assertions: disabled
  Random seed: 0
  Sizeofs: void*:8, int:4, long:8, size_t:8
Input files DNA, FASTA:
  Edi_0//tmp/segment_juncs.fa
Reading reference sizes
  Time reading reference sizes: 00:00:05
Calculating joined length
Writing header
Reserving space for joined string
Joining reference sequences
  Time to join reference sequences: 00:00:12
bmax according to bmaxDivN setting: 34568864
Using parameters --bmax 25926648 --dcv 1024
  Doing ahead-of-time memory usage test
  Passed!  Constructing with these parameters: --bmax 25926648 --dcv 1024
Constructing suffix-array element generator
Building DifferenceCoverSample
  Building sPrime
  Building sPrimeOrder
  V-Sorting samples
  V-Sorting samples time: 00:00:06
  Allocating rank array
  Ranking v-sort output
  Ranking v-sort output time: 00:00:02
  Invoking Larsson-Sadakane on ranks
  Invoking Larsson-Sadakane on ranks time: 00:00:02
  Sanity-checking and returning
Building samples
Reserving space for 12 sample suffixes
Generating random suffixes
QSorting 12 sample offsets, eliminating duplicates
QSorting sample offsets, eliminating duplicates time: 00:00:00
Multikey QSorting 12 samples
  (Using difference cover)
  Multikey QSorting samples time: 00:00:00
Calculating bucket sizes
  Binary sorting into buckets
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  Binary sorting into buckets time: 00:00:15
Splitting and merging
  Splitting and merging time: 00:00:00
Split 1, merged 5; iterating...
  Binary sorting into buckets
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  Binary sorting into buckets time: 00:00:14
Splitting and merging
  Splitting and merging time: 00:00:00
Avg bucket size: 1.53639e+07 (target: 25926647)
Converting suffix-array elements to index image
Allocating ftab, absorbFtab
Entering Ebwt loop
Getting block 1 of 9
  Reserving size (25926648) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:03
  Sorting block of length 18786769
  (Using difference cover)
  Sorting block time: 00:00:14
Returning block of 18786770
Getting block 2 of 9
  Reserving size (25926648) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:03
  Sorting block of length 15557832
  (Using difference cover)
  Sorting block time: 00:00:12
Returning block of 15557833
Getting block 3 of 9
  Reserving size (25926648) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:05
  Sorting block of length 15842925
  (Using difference cover)
  Sorting block time: 00:00:12
Returning block of 15842926
Getting block 4 of 9
  Reserving size (25926648) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:04
  Sorting block of length 14609002
  (Using difference cover)
  Sorting block time: 00:00:14
Returning block of 14609003
Getting block 5 of 9
  Reserving size (25926648) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
  10%
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  Block accumulator loop time: 00:00:06
  Sorting block of length 12454485
  (Using difference cover)
  Sorting block time: 00:00:09
Returning block of 12454486
Getting block 6 of 9
  Reserving size (25926648) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:08
  Sorting block of length 15185564
  (Using difference cover)
  Sorting block time: 00:00:14
Returning block of 15185565
Getting block 7 of 9
  Reserving size (25926648) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:07
  Sorting block of length 10796800
  (Using difference cover)
  Sorting block time: 00:00:10
Returning block of 10796801
Getting block 8 of 9
  Reserving size (25926648) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:07
  Sorting block of length 24398527
  (Using difference cover)
  Sorting block time: 00:00:24
Returning block of 24398528
Getting block 9 of 9
  Reserving size (25926648) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:04
  Sorting block of length 10643547
  (Using difference cover)
  Sorting block time: 00:00:09
Returning block of 10643548
Exited Ebwt loop
fchr[A]: 0
fchr[C]: 42790703
fchr[G]: 69203746
fchr[T]: 95684046
fchr[$]: 138275459
Exiting Ebwt::buildToDisk()
Returning from initFromVector
Wrote 244752337 bytes to primary EBWT file: Edi_0//tmp/segment_juncs.1.ebwt
Wrote 17284440 bytes to secondary EBWT file: Edi_0//tmp/segment_juncs.2.ebwt
Re-opening _in1 and _in2 as input streams
Returning from Ebwt constructor
Headers:
    len: 138275459
    bwtLen: 138275460
    sz: 34568865
    bwtSz: 34568865
    lineRate: 6
    linesPerSide: 1
    offRate: 5
    offMask: 0xffffffe0
    isaRate: -1
    isaMask: 0xffffffff
    ftabChars: 10
    eftabLen: 20
    eftabSz: 80
    ftabLen: 1048577
    ftabSz: 4194308
    offsLen: 4321109
    offsSz: 17284436
    isaLen: 0
    isaSz: 0
    lineSz: 64
    sideSz: 64
    sideBwtSz: 56
    sideBwtLen: 224
    numSidePairs: 308651
    numSides: 617302
    numLines: 617302
    ebwtTotLen: 39507328
    ebwtTotSz: 39507328
    reverse: 0
Total time for call to driver() for forward index: 00:04:12
Reading reference sizes
  Time reading reference sizes: 00:00:02
Calculating joined length
Writing header
Reserving space for joined string
Joining reference sequences
  Time to join reference sequences: 00:00:12
bmax according to bmaxDivN setting: 34568864
Using parameters --bmax 25926648 --dcv 1024
  Doing ahead-of-time memory usage test
  Passed!  Constructing with these parameters: --bmax 25926648 --dcv 1024
Constructing suffix-array element generator
Building DifferenceCoverSample
  Building sPrime
  Building sPrimeOrder
  V-Sorting samples
  V-Sorting samples time: 00:00:06
  Allocating rank array
  Ranking v-sort output
  Ranking v-sort output time: 00:00:02
  Invoking Larsson-Sadakane on ranks
  Invoking Larsson-Sadakane on ranks time: 00:00:03
  Sanity-checking and returning
Building samples
Reserving space for 12 sample suffixes
Generating random suffixes
QSorting 12 sample offsets, eliminating duplicates
QSorting sample offsets, eliminating duplicates time: 00:00:00
Multikey QSorting 12 samples
  (Using difference cover)
  Multikey QSorting samples time: 00:00:00
Calculating bucket sizes
  Binary sorting into buckets
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  30%
  40%
  50%
  60%
  70%
  80%
  90%
  100%
  Binary sorting into buckets time: 00:00:17
Splitting and merging
  Splitting and merging time: 00:00:00
Split 1, merged 7; iterating...
  Binary sorting into buckets
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  30%
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  80%
  90%
  100%
  Binary sorting into buckets time: 00:00:09
Splitting and merging
  Splitting and merging time: 00:00:00
Split 1, merged 1; iterating...
  Binary sorting into buckets
  10%
  20%
  30%
  40%
  50%
  60%
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  80%
  90%
  100%
  Binary sorting into buckets time: 00:00:07
Splitting and merging
  Splitting and merging time: 00:00:00
Avg bucket size: 1.97536e+07 (target: 25926647)
Converting suffix-array elements to index image
Allocating ftab, absorbFtab
Entering Ebwt loop
Getting block 1 of 7
  Reserving size (25926648) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:03
  Sorting block of length 25767033
  (Using difference cover)
  Sorting block time: 00:00:18
Returning block of 25767034
Getting block 2 of 7
  Reserving size (25926648) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:04
  Sorting block of length 15255801
  (Using difference cover)
  Sorting block time: 00:00:11
Returning block of 15255802
Getting block 3 of 7
  Reserving size (25926648) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:06
  Sorting block of length 25660864
  (Using difference cover)
  Sorting block time: 00:00:30
Returning block of 25660865
Getting block 4 of 7
  Reserving size (25926648) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:07
  Sorting block of length 19363409
  (Using difference cover)
  Sorting block time: 00:00:26
Returning block of 19363410
Getting block 5 of 7
  Reserving size (25926648) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:09
  Sorting block of length 15771767
  (Using difference cover)
  Sorting block time: 00:00:18
Returning block of 15771768
Getting block 6 of 7
  Reserving size (25926648) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
  10%
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  Block accumulator loop time: 00:00:09
  Sorting block of length 25913491
  (Using difference cover)
  Sorting block time: 00:00:34
Returning block of 25913492
Getting block 7 of 7
  Reserving size (25926648) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
  10%
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  Block accumulator loop time: 00:00:06
  Sorting block of length 10543088
  (Using difference cover)
  Sorting block time: 00:00:14
Returning block of 10543089
Exited Ebwt loop
fchr[A]: 0
fchr[C]: 42790703
fchr[G]: 69203746
fchr[T]: 95684046
fchr[$]: 138275459
Exiting Ebwt::buildToDisk()
Returning from initFromVector
Wrote 244752337 bytes to primary EBWT file: Edi_0//tmp/segment_juncs.rev.1.ebwt
Wrote 17284440 bytes to secondary EBWT file: Edi_0//tmp/segment_juncs.rev.2.ebwt
Re-opening _in1 and _in2 as input streams
Returning from Ebwt constructor
Headers:
    len: 138275459
    bwtLen: 138275460
    sz: 34568865
    bwtSz: 34568865
    lineRate: 6
    linesPerSide: 1
    offRate: 5
    offMask: 0xffffffe0
    isaRate: -1
    isaMask: 0xffffffff
    ftabChars: 10
    eftabLen: 20
    eftabSz: 80
    ftabLen: 1048577
    ftabSz: 4194308
    offsLen: 4321109
    offsSz: 17284436
    isaLen: 0
    isaSz: 0
    lineSz: 64
    sideSz: 64
    sideBwtSz: 56
    sideBwtLen: 224
    numSidePairs: 308651
    numSides: 617302
    numLines: 617302
    ebwtTotLen: 39507328
    ebwtTotSz: 39507328
    reverse: 0
Total time for backward call to driver() for mirror index: 00:04:57