Settings:
  Output files: "Mt_0//tmp/segment_juncs.*.ebwt"
  Line rate: 6 (line is 64 bytes)
  Lines per side: 1 (side is 64 bytes)
  Offset rate: 5 (one in 32)
  FTable chars: 10
  Strings: unpacked
  Max bucket size: default
  Max bucket size, sqrt multiplier: default
  Max bucket size, len divisor: 4
  Difference-cover sample period: 1024
  Endianness: little
  Actual local endianness: little
  Sanity checking: disabled
  Assertions: disabled
  Random seed: 0
  Sizeofs: void*:8, int:4, long:8, size_t:8
Input files DNA, FASTA:
  Mt_0//tmp/segment_juncs.fa
Reading reference sizes
  Time reading reference sizes: 00:00:06
Calculating joined length
Writing header
Reserving space for joined string
Joining reference sequences
  Time to join reference sequences: 00:00:10
bmax according to bmaxDivN setting: 29475726
Using parameters --bmax 22106795 --dcv 1024
  Doing ahead-of-time memory usage test
  Passed!  Constructing with these parameters: --bmax 22106795 --dcv 1024
Constructing suffix-array element generator
Building DifferenceCoverSample
  Building sPrime
  Building sPrimeOrder
  V-Sorting samples
  V-Sorting samples time: 00:00:04
  Allocating rank array
  Ranking v-sort output
  Ranking v-sort output time: 00:00:01
  Invoking Larsson-Sadakane on ranks
  Invoking Larsson-Sadakane on ranks time: 00:00:03
  Sanity-checking and returning
Building samples
Reserving space for 12 sample suffixes
Generating random suffixes
QSorting 12 sample offsets, eliminating duplicates
QSorting sample offsets, eliminating duplicates time: 00:00:00
Multikey QSorting 12 samples
  (Using difference cover)
  Multikey QSorting samples time: 00:00:00
Calculating bucket sizes
  Binary sorting into buckets
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  Binary sorting into buckets time: 00:00:11
Splitting and merging
  Splitting and merging time: 00:00:00
Avg bucket size: 1.68433e+07 (target: 22106794)
Converting suffix-array elements to index image
Allocating ftab, absorbFtab
Entering Ebwt loop
Getting block 1 of 7
  Reserving size (22106795) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:03
  Sorting block of length 16825133
  (Using difference cover)
  Sorting block time: 00:00:12
Returning block of 16825134
Getting block 2 of 7
  Reserving size (22106795) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:04
  Sorting block of length 16344180
  (Using difference cover)
  Sorting block time: 00:00:16
Returning block of 16344181
Getting block 3 of 7
  Reserving size (22106795) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:05
  Sorting block of length 19489749
  (Using difference cover)
  Sorting block time: 00:00:13
Returning block of 19489750
Getting block 4 of 7
  Reserving size (22106795) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:04
  Sorting block of length 6219556
  (Using difference cover)
  Sorting block time: 00:00:06
Returning block of 6219557
Getting block 5 of 7
  Reserving size (22106795) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:02
  Sorting block of length 16744583
  (Using difference cover)
  Sorting block time: 00:00:13
Returning block of 16744584
Getting block 6 of 7
  Reserving size (22106795) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:06
  Sorting block of length 20808738
  (Using difference cover)
  Sorting block time: 00:00:19
Returning block of 20808739
Getting block 7 of 7
  Reserving size (22106795) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:04
  Sorting block of length 21470960
  (Using difference cover)
  Sorting block time: 00:00:20
Returning block of 21470961
Exited Ebwt loop
fchr[A]: 0
fchr[C]: 36020379
fchr[G]: 58981101
fchr[T]: 81972708
fchr[$]: 117902905
Exiting Ebwt::buildToDisk()
Returning from initFromVector
Wrote 209252881 bytes to primary EBWT file: Mt_0//tmp/segment_juncs.1.ebwt
Wrote 14737868 bytes to secondary EBWT file: Mt_0//tmp/segment_juncs.2.ebwt
Re-opening _in1 and _in2 as input streams
Returning from Ebwt constructor
Headers:
    len: 117902905
    bwtLen: 117902906
    sz: 29475727
    bwtSz: 29475727
    lineRate: 6
    linesPerSide: 1
    offRate: 5
    offMask: 0xffffffe0
    isaRate: -1
    isaMask: 0xffffffff
    ftabChars: 10
    eftabLen: 20
    eftabSz: 80
    ftabLen: 1048577
    ftabSz: 4194308
    offsLen: 3684466
    offsSz: 14737864
    isaLen: 0
    isaSz: 0
    lineSz: 64
    sideSz: 64
    sideBwtSz: 56
    sideBwtLen: 224
    numSidePairs: 263177
    numSides: 526354
    numLines: 526354
    ebwtTotLen: 33686656
    ebwtTotSz: 33686656
    reverse: 0
Total time for call to driver() for forward index: 00:03:09
Reading reference sizes
  Time reading reference sizes: 00:00:06
Calculating joined length
Writing header
Reserving space for joined string
Joining reference sequences
  Time to join reference sequences: 00:00:10
bmax according to bmaxDivN setting: 29475726
Using parameters --bmax 22106795 --dcv 1024
  Doing ahead-of-time memory usage test
  Passed!  Constructing with these parameters: --bmax 22106795 --dcv 1024
Constructing suffix-array element generator
Building DifferenceCoverSample
  Building sPrime
  Building sPrimeOrder
  V-Sorting samples
  V-Sorting samples time: 00:00:06
  Allocating rank array
  Ranking v-sort output
  Ranking v-sort output time: 00:00:01
  Invoking Larsson-Sadakane on ranks
  Invoking Larsson-Sadakane on ranks time: 00:00:02
  Sanity-checking and returning
Building samples
Reserving space for 12 sample suffixes
Generating random suffixes
QSorting 12 sample offsets, eliminating duplicates
QSorting sample offsets, eliminating duplicates time: 00:00:00
Multikey QSorting 12 samples
  (Using difference cover)
  Multikey QSorting samples time: 00:00:00
Calculating bucket sizes
  Binary sorting into buckets
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  30%
  40%
  50%
  60%
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  80%
  90%
  100%
  Binary sorting into buckets time: 00:00:13
Splitting and merging
  Splitting and merging time: 00:00:00
Split 2, merged 6; iterating...
  Binary sorting into buckets
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  100%
  Binary sorting into buckets time: 00:00:13
Splitting and merging
  Splitting and merging time: 00:00:00
Split 1, merged 2; iterating...
  Binary sorting into buckets
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  Binary sorting into buckets time: 00:00:12
Splitting and merging
  Splitting and merging time: 00:00:00
Avg bucket size: 1.47379e+07 (target: 22106794)
Converting suffix-array elements to index image
Allocating ftab, absorbFtab
Entering Ebwt loop
Getting block 1 of 8
  Reserving size (22106795) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:03
  Sorting block of length 19453122
  (Using difference cover)
  Sorting block time: 00:00:11
Returning block of 19453123
Getting block 2 of 8
  Reserving size (22106795) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:02
  Sorting block of length 19679979
  (Using difference cover)
  Sorting block time: 00:00:15
Returning block of 19679980
Getting block 3 of 8
  Reserving size (22106795) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:03
  Sorting block of length 8276404
  (Using difference cover)
  Sorting block time: 00:00:05
Returning block of 8276405
Getting block 4 of 8
  Reserving size (22106795) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:04
  Sorting block of length 21137320
  (Using difference cover)
  Sorting block time: 00:00:18
Returning block of 21137321
Getting block 5 of 8
  Reserving size (22106795) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:04
  Sorting block of length 4063657
  (Using difference cover)
  Sorting block time: 00:00:03
Returning block of 4063658
Getting block 6 of 8
  Reserving size (22106795) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:04
  Sorting block of length 20804502
  (Using difference cover)
  Sorting block time: 00:00:15
Returning block of 20804503
Getting block 7 of 8
  Reserving size (22106795) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:05
  Sorting block of length 17717378
  (Using difference cover)
  Sorting block time: 00:00:21
Returning block of 17717379
Getting block 8 of 8
  Reserving size (22106795) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:04
  Sorting block of length 6770536
  (Using difference cover)
  Sorting block time: 00:00:06
Returning block of 6770537
Exited Ebwt loop
fchr[A]: 0
fchr[C]: 36020379
fchr[G]: 58981101
fchr[T]: 81972708
fchr[$]: 117902905
Exiting Ebwt::buildToDisk()
Returning from initFromVector
Wrote 209252881 bytes to primary EBWT file: Mt_0//tmp/segment_juncs.rev.1.ebwt
Wrote 14737868 bytes to secondary EBWT file: Mt_0//tmp/segment_juncs.rev.2.ebwt
Re-opening _in1 and _in2 as input streams
Returning from Ebwt constructor
Headers:
    len: 117902905
    bwtLen: 117902906
    sz: 29475727
    bwtSz: 29475727
    lineRate: 6
    linesPerSide: 1
    offRate: 5
    offMask: 0xffffffe0
    isaRate: -1
    isaMask: 0xffffffff
    ftabChars: 10
    eftabLen: 20
    eftabSz: 80
    ftabLen: 1048577
    ftabSz: 4194308
    offsLen: 3684466
    offsSz: 14737864
    isaLen: 0
    isaSz: 0
    lineSz: 64
    sideSz: 64
    sideBwtSz: 56
    sideBwtLen: 224
    numSidePairs: 263177
    numSides: 526354
    numLines: 526354
    ebwtTotLen: 33686656
    ebwtTotSz: 33686656
    reverse: 0
Total time for backward call to driver() for mirror index: 00:03:32