Settings:
  Output files: "No_0//tmp/segment_juncs.*.ebwt"
  Line rate: 6 (line is 64 bytes)
  Lines per side: 1 (side is 64 bytes)
  Offset rate: 5 (one in 32)
  FTable chars: 10
  Strings: unpacked
  Max bucket size: default
  Max bucket size, sqrt multiplier: default
  Max bucket size, len divisor: 4
  Difference-cover sample period: 1024
  Endianness: little
  Actual local endianness: little
  Sanity checking: disabled
  Assertions: disabled
  Random seed: 0
  Sizeofs: void*:8, int:4, long:8, size_t:8
Input files DNA, FASTA:
  No_0//tmp/segment_juncs.fa
Reading reference sizes
  Time reading reference sizes: 00:00:02
Calculating joined length
Writing header
Reserving space for joined string
Joining reference sequences
  Time to join reference sequences: 00:00:05
bmax according to bmaxDivN setting: 32611044
Using parameters --bmax 24458283 --dcv 1024
  Doing ahead-of-time memory usage test
  Passed!  Constructing with these parameters: --bmax 24458283 --dcv 1024
Constructing suffix-array element generator
Building DifferenceCoverSample
  Building sPrime
  Building sPrimeOrder
  V-Sorting samples
  V-Sorting samples time: 00:00:04
  Allocating rank array
  Ranking v-sort output
  Ranking v-sort output time: 00:00:01
  Invoking Larsson-Sadakane on ranks
  Invoking Larsson-Sadakane on ranks time: 00:00:03
  Sanity-checking and returning
Building samples
Reserving space for 12 sample suffixes
Generating random suffixes
QSorting 12 sample offsets, eliminating duplicates
QSorting sample offsets, eliminating duplicates time: 00:00:00
Multikey QSorting 12 samples
  (Using difference cover)
  Multikey QSorting samples time: 00:00:00
Calculating bucket sizes
  Binary sorting into buckets
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  Binary sorting into buckets time: 00:00:08
Splitting and merging
  Splitting and merging time: 00:00:00
Split 1, merged 7; iterating...
  Binary sorting into buckets
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  Binary sorting into buckets time: 00:00:06
Splitting and merging
  Splitting and merging time: 00:00:00
Split 1, merged 0; iterating...
  Binary sorting into buckets
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  Binary sorting into buckets time: 00:00:06
Splitting and merging
  Splitting and merging time: 00:00:00
Avg bucket size: 2.17407e+07 (target: 24458282)
Converting suffix-array elements to index image
Allocating ftab, absorbFtab
Entering Ebwt loop
Getting block 1 of 6
  Reserving size (24458283) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:02
  Sorting block of length 20843944
  (Using difference cover)
  Sorting block time: 00:00:16
Returning block of 20843945
Getting block 2 of 6
  Reserving size (24458283) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:03
  Sorting block of length 22610904
  (Using difference cover)
  Sorting block time: 00:00:20
Returning block of 22610905
Getting block 3 of 6
  Reserving size (24458283) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:04
  Sorting block of length 17870339
  (Using difference cover)
  Sorting block time: 00:00:22
Returning block of 17870340
Getting block 4 of 6
  Reserving size (24458283) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:05
  Sorting block of length 22635806
  (Using difference cover)
  Sorting block time: 00:00:26
Returning block of 22635807
Getting block 5 of 6
  Reserving size (24458283) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:05
  Sorting block of length 23573789
  (Using difference cover)
  Sorting block time: 00:00:32
Returning block of 23573790
Getting block 6 of 6
  Reserving size (24458283) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:04
  Sorting block of length 22909389
  (Using difference cover)
  Sorting block time: 00:00:26
Returning block of 22909390
Exited Ebwt loop
fchr[A]: 0
fchr[C]: 39791433
fchr[G]: 65202209
fchr[T]: 90685863
fchr[$]: 130444176
Exiting Ebwt::buildToDisk()
Returning from initFromVector
Wrote 231193567 bytes to primary EBWT file: No_0//tmp/segment_juncs.1.ebwt
Wrote 16305528 bytes to secondary EBWT file: No_0//tmp/segment_juncs.2.ebwt
Re-opening _in1 and _in2 as input streams
Returning from Ebwt constructor
Headers:
    len: 130444176
    bwtLen: 130444177
    sz: 32611044
    bwtSz: 32611045
    lineRate: 6
    linesPerSide: 1
    offRate: 5
    offMask: 0xffffffe0
    isaRate: -1
    isaMask: 0xffffffff
    ftabChars: 10
    eftabLen: 20
    eftabSz: 80
    ftabLen: 1048577
    ftabSz: 4194308
    offsLen: 4076381
    offsSz: 16305524
    isaLen: 0
    isaSz: 0
    lineSz: 64
    sideSz: 64
    sideBwtSz: 56
    sideBwtLen: 224
    numSidePairs: 291171
    numSides: 582342
    numLines: 582342
    ebwtTotLen: 37269888
    ebwtTotSz: 37269888
    reverse: 0
Total time for call to driver() for forward index: 00:03:59
Reading reference sizes
  Time reading reference sizes: 00:00:04
Calculating joined length
Writing header
Reserving space for joined string
Joining reference sequences
  Time to join reference sequences: 00:00:09
bmax according to bmaxDivN setting: 32611044
Using parameters --bmax 24458283 --dcv 1024
  Doing ahead-of-time memory usage test
  Passed!  Constructing with these parameters: --bmax 24458283 --dcv 1024
Constructing suffix-array element generator
Building DifferenceCoverSample
  Building sPrime
  Building sPrimeOrder
  V-Sorting samples
  V-Sorting samples time: 00:00:11
  Allocating rank array
  Ranking v-sort output
  Ranking v-sort output time: 00:00:03
  Invoking Larsson-Sadakane on ranks
  Invoking Larsson-Sadakane on ranks time: 00:00:05
  Sanity-checking and returning
Building samples
Reserving space for 12 sample suffixes
Generating random suffixes
QSorting 12 sample offsets, eliminating duplicates
QSorting sample offsets, eliminating duplicates time: 00:00:00
Multikey QSorting 12 samples
  (Using difference cover)
  Multikey QSorting samples time: 00:00:00
Calculating bucket sizes
  Binary sorting into buckets
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  60%
  70%
  80%
  90%
  100%
  Binary sorting into buckets time: 00:00:14
Splitting and merging
  Splitting and merging time: 00:00:00
Avg bucket size: 1.86349e+07 (target: 24458282)
Converting suffix-array elements to index image
Allocating ftab, absorbFtab
Entering Ebwt loop
Getting block 1 of 7
  Reserving size (24458283) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:04
  Sorting block of length 20282860
  (Using difference cover)
  Sorting block time: 00:00:28
Returning block of 20282861
Getting block 2 of 7
  Reserving size (24458283) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:04
  Sorting block of length 21861374
  (Using difference cover)
  Sorting block time: 00:00:34
Returning block of 21861375
Getting block 3 of 7
  Reserving size (24458283) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:05
  Sorting block of length 9936479
  (Using difference cover)
  Sorting block time: 00:00:13
Returning block of 9936480
Getting block 4 of 7
  Reserving size (24458283) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:04
  Sorting block of length 24193531
  (Using difference cover)
  Sorting block time: 00:00:39
Returning block of 24193532
Getting block 5 of 7
  Reserving size (24458283) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:06
  Sorting block of length 24326198
  (Using difference cover)
  Sorting block time: 00:00:35
Returning block of 24326199
Getting block 6 of 7
  Reserving size (24458283) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:06
  Sorting block of length 18255775
  (Using difference cover)
  Sorting block time: 00:00:31
Returning block of 18255776
Getting block 7 of 7
  Reserving size (24458283) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:03
  Sorting block of length 11587953
  (Using difference cover)
  Sorting block time: 00:00:17
Returning block of 11587954
Exited Ebwt loop
fchr[A]: 0
fchr[C]: 39791433
fchr[G]: 65202209
fchr[T]: 90685863
fchr[$]: 130444176
Exiting Ebwt::buildToDisk()
Returning from initFromVector
Wrote 231193567 bytes to primary EBWT file: No_0//tmp/segment_juncs.rev.1.ebwt
Wrote 16305528 bytes to secondary EBWT file: No_0//tmp/segment_juncs.rev.2.ebwt
Re-opening _in1 and _in2 as input streams
Returning from Ebwt constructor
Headers:
    len: 130444176
    bwtLen: 130444177
    sz: 32611044
    bwtSz: 32611045
    lineRate: 6
    linesPerSide: 1
    offRate: 5
    offMask: 0xffffffe0
    isaRate: -1
    isaMask: 0xffffffff
    ftabChars: 10
    eftabLen: 20
    eftabSz: 80
    ftabLen: 1048577
    ftabSz: 4194308
    offsLen: 4076381
    offsSz: 16305524
    isaLen: 0
    isaSz: 0
    lineSz: 64
    sideSz: 64
    sideBwtSz: 56
    sideBwtLen: 224
    numSidePairs: 291171
    numSides: 582342
    numLines: 582342
    ebwtTotLen: 37269888
    ebwtTotSz: 37269888
    reverse: 0
Total time for backward call to driver() for mirror index: 00:05:29