Settings:
  Output files: "Oy_0//tmp/segment_juncs.*.ebwt"
  Line rate: 6 (line is 64 bytes)
  Lines per side: 1 (side is 64 bytes)
  Offset rate: 5 (one in 32)
  FTable chars: 10
  Strings: unpacked
  Max bucket size: default
  Max bucket size, sqrt multiplier: default
  Max bucket size, len divisor: 4
  Difference-cover sample period: 1024
  Endianness: little
  Actual local endianness: little
  Sanity checking: disabled
  Assertions: disabled
  Random seed: 0
  Sizeofs: void*:8, int:4, long:8, size_t:8
Input files DNA, FASTA:
  Oy_0//tmp/segment_juncs.fa
Reading reference sizes
  Time reading reference sizes: 00:00:06
Calculating joined length
Writing header
Reserving space for joined string
Joining reference sequences
  Time to join reference sequences: 00:00:12
bmax according to bmaxDivN setting: 39832430
Using parameters --bmax 29874323 --dcv 1024
  Doing ahead-of-time memory usage test
  Passed!  Constructing with these parameters: --bmax 29874323 --dcv 1024
Constructing suffix-array element generator
Building DifferenceCoverSample
  Building sPrime
  Building sPrimeOrder
  V-Sorting samples
  V-Sorting samples time: 00:00:13
  Allocating rank array
  Ranking v-sort output
  Ranking v-sort output time: 00:00:03
  Invoking Larsson-Sadakane on ranks
  Invoking Larsson-Sadakane on ranks time: 00:00:07
  Sanity-checking and returning
Building samples
Reserving space for 12 sample suffixes
Generating random suffixes
QSorting 12 sample offsets, eliminating duplicates
QSorting sample offsets, eliminating duplicates time: 00:00:00
Multikey QSorting 12 samples
  (Using difference cover)
  Multikey QSorting samples time: 00:00:00
Calculating bucket sizes
  Binary sorting into buckets
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  100%
  Binary sorting into buckets time: 00:00:17
Splitting and merging
  Splitting and merging time: 00:00:00
Split 2, merged 7; iterating...
  Binary sorting into buckets
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  Binary sorting into buckets time: 00:00:13
Splitting and merging
  Splitting and merging time: 00:00:00
Split 1, merged 0; iterating...
  Binary sorting into buckets
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  Binary sorting into buckets time: 00:00:14
Splitting and merging
  Splitting and merging time: 00:00:00
Split 1, merged 1; iterating...
  Binary sorting into buckets
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  Binary sorting into buckets time: 00:00:13
Splitting and merging
  Splitting and merging time: 00:00:00
Split 1, merged 1; iterating...
  Binary sorting into buckets
  10%
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  30%
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  100%
  Binary sorting into buckets time: 00:00:14
Splitting and merging
  Splitting and merging time: 00:00:00
Avg bucket size: 1.99162e+07 (target: 29874322)
Converting suffix-array elements to index image
Allocating ftab, absorbFtab
Entering Ebwt loop
Getting block 1 of 8
  Reserving size (29874323) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:05
  Sorting block of length 24054040
  (Using difference cover)
  Sorting block time: 00:00:33
Returning block of 24054041
Getting block 2 of 8
  Reserving size (29874323) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:06
  Sorting block of length 25682833
  (Using difference cover)
  Sorting block time: 00:00:36
Returning block of 25682834
Getting block 3 of 8
  Reserving size (29874323) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:05
  Sorting block of length 20309624
  (Using difference cover)
  Sorting block time: 00:00:28
Returning block of 20309625
Getting block 4 of 8
  Reserving size (29874323) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:05
  Sorting block of length 17118607
  (Using difference cover)
  Sorting block time: 00:00:29
Returning block of 17118608
Getting block 5 of 8
  Reserving size (29874323) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:03
  Sorting block of length 18569232
  (Using difference cover)
  Sorting block time: 00:00:20
Returning block of 18569233
Getting block 6 of 8
  Reserving size (29874323) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:03
  Sorting block of length 23302387
  (Using difference cover)
  Sorting block time: 00:00:28
Returning block of 23302388
Getting block 7 of 8
  Reserving size (29874323) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:04
  Sorting block of length 21494878
  (Using difference cover)
  Sorting block time: 00:00:13
Returning block of 21494879
Getting block 8 of 8
  Reserving size (29874323) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:02
  Sorting block of length 8798114
  (Using difference cover)
  Sorting block time: 00:00:05
Returning block of 8798115
Exited Ebwt loop
fchr[A]: 0
fchr[C]: 49087589
fchr[G]: 79640701
fchr[T]: 110184619
fchr[$]: 159329722
Exiting Ebwt::buildToDisk()
Returning from initFromVector
Wrote 281400980 bytes to primary EBWT file: Oy_0//tmp/segment_juncs.1.ebwt
Wrote 19916220 bytes to secondary EBWT file: Oy_0//tmp/segment_juncs.2.ebwt
Re-opening _in1 and _in2 as input streams
Returning from Ebwt constructor
Headers:
    len: 159329722
    bwtLen: 159329723
    sz: 39832431
    bwtSz: 39832431
    lineRate: 6
    linesPerSide: 1
    offRate: 5
    offMask: 0xffffffe0
    isaRate: -1
    isaMask: 0xffffffff
    ftabChars: 10
    eftabLen: 20
    eftabSz: 80
    ftabLen: 1048577
    ftabSz: 4194308
    offsLen: 4979054
    offsSz: 19916216
    isaLen: 0
    isaSz: 0
    lineSz: 64
    sideSz: 64
    sideBwtSz: 56
    sideBwtLen: 224
    numSidePairs: 355647
    numSides: 711294
    numLines: 711294
    ebwtTotLen: 45522816
    ebwtTotSz: 45522816
    reverse: 0
Total time for call to driver() for forward index: 00:06:24
Reading reference sizes
  Time reading reference sizes: 00:00:03
Calculating joined length
Writing header
Reserving space for joined string
Joining reference sequences
  Time to join reference sequences: 00:00:06
bmax according to bmaxDivN setting: 39832430
Using parameters --bmax 29874323 --dcv 1024
  Doing ahead-of-time memory usage test
  Passed!  Constructing with these parameters: --bmax 29874323 --dcv 1024
Constructing suffix-array element generator
Building DifferenceCoverSample
  Building sPrime
  Building sPrimeOrder
  V-Sorting samples
  V-Sorting samples time: 00:00:06
  Allocating rank array
  Ranking v-sort output
  Ranking v-sort output time: 00:00:02
  Invoking Larsson-Sadakane on ranks
  Invoking Larsson-Sadakane on ranks time: 00:00:02
  Sanity-checking and returning
Building samples
Reserving space for 12 sample suffixes
Generating random suffixes
QSorting 12 sample offsets, eliminating duplicates
QSorting sample offsets, eliminating duplicates time: 00:00:00
Multikey QSorting 12 samples
  (Using difference cover)
  Multikey QSorting samples time: 00:00:00
Calculating bucket sizes
  Binary sorting into buckets
  10%
  20%
  30%
  40%
  50%
  60%
  70%
  80%
  90%
  100%
  Binary sorting into buckets time: 00:00:11
Splitting and merging
  Splitting and merging time: 00:00:00
Split 1, merged 7; iterating...
  Binary sorting into buckets
  10%
  20%
  30%
  40%
  50%
  60%
  70%
  80%
  90%
  100%
  Binary sorting into buckets time: 00:00:07
Splitting and merging
  Splitting and merging time: 00:00:00
Split 1, merged 0; iterating...
  Binary sorting into buckets
  10%
  20%
  30%
  40%
  50%
  60%
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  80%
  90%
  100%
  Binary sorting into buckets time: 00:00:08
Splitting and merging
  Splitting and merging time: 00:00:00
Avg bucket size: 2.27614e+07 (target: 29874322)
Converting suffix-array elements to index image
Allocating ftab, absorbFtab
Entering Ebwt loop
Getting block 1 of 7
  Reserving size (29874323) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:03
  Sorting block of length 28884972
  (Using difference cover)
  Sorting block time: 00:00:14
Returning block of 28884973
Getting block 2 of 7
  Reserving size (29874323) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:03
  Sorting block of length 27641778
  (Using difference cover)
  Sorting block time: 00:00:18
Returning block of 27641779
Getting block 3 of 7
  Reserving size (29874323) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
  10%
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  100%
  Block accumulator loop time: 00:00:03
  Sorting block of length 18290312
  (Using difference cover)
  Sorting block time: 00:00:17
Returning block of 18290313
Getting block 4 of 7
  Reserving size (29874323) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:04
  Sorting block of length 21000870
  (Using difference cover)
  Sorting block time: 00:00:17
Returning block of 21000871
Getting block 5 of 7
  Reserving size (29874323) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:05
  Sorting block of length 28382302
  (Using difference cover)
  Sorting block time: 00:00:24
Returning block of 28382303
Getting block 6 of 7
  Reserving size (29874323) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:05
  Sorting block of length 15249742
  (Using difference cover)
  Sorting block time: 00:00:15
Returning block of 15249743
Getting block 7 of 7
  Reserving size (29874323) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
  10%
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  Block accumulator loop time: 00:00:03
  Sorting block of length 19879740
  (Using difference cover)
  Sorting block time: 00:00:15
Returning block of 19879741
Exited Ebwt loop
fchr[A]: 0
fchr[C]: 49087589
fchr[G]: 79640701
fchr[T]: 110184619
fchr[$]: 159329722
Exiting Ebwt::buildToDisk()
Returning from initFromVector
Wrote 281400980 bytes to primary EBWT file: Oy_0//tmp/segment_juncs.rev.1.ebwt
Wrote 19916220 bytes to secondary EBWT file: Oy_0//tmp/segment_juncs.rev.2.ebwt
Re-opening _in1 and _in2 as input streams
Returning from Ebwt constructor
Headers:
    len: 159329722
    bwtLen: 159329723
    sz: 39832431
    bwtSz: 39832431
    lineRate: 6
    linesPerSide: 1
    offRate: 5
    offMask: 0xffffffe0
    isaRate: -1
    isaMask: 0xffffffff
    ftabChars: 10
    eftabLen: 20
    eftabSz: 80
    ftabLen: 1048577
    ftabSz: 4194308
    offsLen: 4979054
    offsSz: 19916216
    isaLen: 0
    isaSz: 0
    lineSz: 64
    sideSz: 64
    sideBwtSz: 56
    sideBwtLen: 224
    numSidePairs: 355647
    numSides: 711294
    numLines: 711294
    ebwtTotLen: 45522816
    ebwtTotSz: 45522816
    reverse: 0
Total time for backward call to driver() for mirror index: 00:03:43