tophat_reports v1.2.0 (1752)
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[samopen] SAM header is present: 7 sequences.
SQ: Chr1 - 30427671
SQ: Chr2 - 19698289
SQ: Chr3 - 23459830
SQ: Chr4 - 18585056
SQ: Chr5 - 26975502
SQ: ChrC - 154478
SQ: ChrM - 366924
Loaded 99607 junctions
Reporting final accepted alignments...done
Printing junction BED track...done
Printing insertions...done
Printing deletions...done
Found 98101 junctions from happy spliced reads