Settings:
  Output files: "Tsu_0//tmp/segment_juncs.*.ebwt"
  Line rate: 6 (line is 64 bytes)
  Lines per side: 1 (side is 64 bytes)
  Offset rate: 5 (one in 32)
  FTable chars: 10
  Strings: unpacked
  Max bucket size: default
  Max bucket size, sqrt multiplier: default
  Max bucket size, len divisor: 4
  Difference-cover sample period: 1024
  Endianness: little
  Actual local endianness: little
  Sanity checking: disabled
  Assertions: disabled
  Random seed: 0
  Sizeofs: void*:8, int:4, long:8, size_t:8
Input files DNA, FASTA:
  Tsu_0//tmp/segment_juncs.fa
Reading reference sizes
  Time reading reference sizes: 00:00:06
Calculating joined length
Writing header
Reserving space for joined string
Joining reference sequences
  Time to join reference sequences: 00:00:12
bmax according to bmaxDivN setting: 40494197
Using parameters --bmax 30370648 --dcv 1024
  Doing ahead-of-time memory usage test
  Passed!  Constructing with these parameters: --bmax 30370648 --dcv 1024
Constructing suffix-array element generator
Building DifferenceCoverSample
  Building sPrime
  Building sPrimeOrder
  V-Sorting samples
  V-Sorting samples time: 00:00:15
  Allocating rank array
  Ranking v-sort output
  Ranking v-sort output time: 00:00:03
  Invoking Larsson-Sadakane on ranks
  Invoking Larsson-Sadakane on ranks time: 00:00:07
  Sanity-checking and returning
Building samples
Reserving space for 12 sample suffixes
Generating random suffixes
QSorting 12 sample offsets, eliminating duplicates
QSorting sample offsets, eliminating duplicates time: 00:00:00
Multikey QSorting 12 samples
  (Using difference cover)
  Multikey QSorting samples time: 00:00:00
Calculating bucket sizes
  Binary sorting into buckets
  10%
  20%
  30%
  40%
  50%
  60%
  70%
  80%
  90%
  100%
  Binary sorting into buckets time: 00:00:17
Splitting and merging
  Splitting and merging time: 00:00:00
Split 1, merged 6; iterating...
  Binary sorting into buckets
  10%
  20%
  30%
  40%
  50%
  60%
  70%
  80%
  90%
  100%
  Binary sorting into buckets time: 00:00:13
Splitting and merging
  Splitting and merging time: 00:00:00
Avg bucket size: 2.02471e+07 (target: 30370647)
Converting suffix-array elements to index image
Allocating ftab, absorbFtab
Entering Ebwt loop
Getting block 1 of 8
  Reserving size (30370648) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
  10%
  20%
  30%
  40%
  50%
  60%
  70%
  80%
  90%
  100%
  Block accumulator loop time: 00:00:04
  Sorting block of length 21315807
  (Using difference cover)
  Sorting block time: 00:00:30
Returning block of 21315808
Getting block 2 of 8
  Reserving size (30370648) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
  10%
  20%
  30%
  40%
  50%
  60%
  70%
  80%
  90%
  100%
  Block accumulator loop time: 00:00:06
  Sorting block of length 25446005
  (Using difference cover)
  Sorting block time: 00:00:38
Returning block of 25446006
Getting block 3 of 8
  Reserving size (30370648) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
  10%
  20%
  30%
  40%
  50%
  60%
  70%
  80%
  90%
  100%
  Block accumulator loop time: 00:00:03
  Sorting block of length 10700806
  (Using difference cover)
  Sorting block time: 00:00:12
Returning block of 10700807
Getting block 4 of 8
  Reserving size (30370648) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
  10%
  20%
  30%
  40%
  50%
  60%
  70%
  80%
  90%
  100%
  Block accumulator loop time: 00:00:03
  Sorting block of length 23781145
  (Using difference cover)
  Sorting block time: 00:00:30
Returning block of 23781146
Getting block 5 of 8
  Reserving size (30370648) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
  10%
  20%
  30%
  40%
  50%
  60%
  70%
  80%
  90%
  100%
  Block accumulator loop time: 00:00:03
  Sorting block of length 22275135
  (Using difference cover)
  Sorting block time: 00:00:15
Returning block of 22275136
Getting block 6 of 8
  Reserving size (30370648) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
  10%
  20%
  30%
  40%
  50%
  60%
  70%
  80%
  90%
  100%
  Block accumulator loop time: 00:00:04
  Sorting block of length 15814769
  (Using difference cover)
  Sorting block time: 00:00:10
Returning block of 15814770
Getting block 7 of 8
  Reserving size (30370648) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
  10%
  20%
  30%
  40%
  50%
  60%
  70%
  80%
  90%
  100%
  Block accumulator loop time: 00:00:03
  Sorting block of length 26539367
  (Using difference cover)
  Sorting block time: 00:00:20
Returning block of 26539368
Getting block 8 of 8
  Reserving size (30370648) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
  10%
  20%
  30%
  40%
  50%
  60%
  70%
  80%
  90%
  100%
  Block accumulator loop time: 00:00:02
  Sorting block of length 16103749
  (Using difference cover)
  Sorting block time: 00:00:09
Returning block of 16103750
Exited Ebwt loop
fchr[A]: 0
fchr[C]: 49877207
fchr[G]: 80957283
fchr[T]: 112166902
fchr[$]: 161976790
Exiting Ebwt::buildToDisk()
Returning from initFromVector
Wrote 286038342 bytes to primary EBWT file: Tsu_0//tmp/segment_juncs.1.ebwt
Wrote 20247104 bytes to secondary EBWT file: Tsu_0//tmp/segment_juncs.2.ebwt
Re-opening _in1 and _in2 as input streams
Returning from Ebwt constructor
Headers:
    len: 161976790
    bwtLen: 161976791
    sz: 40494198
    bwtSz: 40494198
    lineRate: 6
    linesPerSide: 1
    offRate: 5
    offMask: 0xffffffe0
    isaRate: -1
    isaMask: 0xffffffff
    ftabChars: 10
    eftabLen: 20
    eftabSz: 80
    ftabLen: 1048577
    ftabSz: 4194308
    offsLen: 5061775
    offsSz: 20247100
    isaLen: 0
    isaSz: 0
    lineSz: 64
    sideSz: 64
    sideBwtSz: 56
    sideBwtLen: 224
    numSidePairs: 361556
    numSides: 723112
    numLines: 723112
    ebwtTotLen: 46279168
    ebwtTotSz: 46279168
    reverse: 0
Total time for call to driver() for forward index: 00:05:03
Reading reference sizes
  Time reading reference sizes: 00:00:02
Calculating joined length
Writing header
Reserving space for joined string
Joining reference sequences
  Time to join reference sequences: 00:00:06
bmax according to bmaxDivN setting: 40494197
Using parameters --bmax 30370648 --dcv 1024
  Doing ahead-of-time memory usage test
  Passed!  Constructing with these parameters: --bmax 30370648 --dcv 1024
Constructing suffix-array element generator
Building DifferenceCoverSample
  Building sPrime
  Building sPrimeOrder
  V-Sorting samples
  V-Sorting samples time: 00:00:07
  Allocating rank array
  Ranking v-sort output
  Ranking v-sort output time: 00:00:01
  Invoking Larsson-Sadakane on ranks
  Invoking Larsson-Sadakane on ranks time: 00:00:02
  Sanity-checking and returning
Building samples
Reserving space for 12 sample suffixes
Generating random suffixes
QSorting 12 sample offsets, eliminating duplicates
QSorting sample offsets, eliminating duplicates time: 00:00:00
Multikey QSorting 12 samples
  (Using difference cover)
  Multikey QSorting samples time: 00:00:00
Calculating bucket sizes
  Binary sorting into buckets
  10%
  20%
  30%
  40%
  50%
  60%
  70%
  80%
  90%
  100%
  Binary sorting into buckets time: 00:00:10
Splitting and merging
  Splitting and merging time: 00:00:00
Split 2, merged 7; iterating...
  Binary sorting into buckets
  10%
  20%
  30%
  40%
  50%
  60%
  70%
  80%
  90%
  100%
  Binary sorting into buckets time: 00:00:10
Splitting and merging
  Splitting and merging time: 00:00:00
Split 1, merged 1; iterating...
  Binary sorting into buckets
  10%
  20%
  30%
  40%
  50%
  60%
  70%
  80%
  90%
  100%
  Binary sorting into buckets time: 00:00:08
Splitting and merging
  Splitting and merging time: 00:00:00
Avg bucket size: 2.31395e+07 (target: 30370647)
Converting suffix-array elements to index image
Allocating ftab, absorbFtab
Entering Ebwt loop
Getting block 1 of 7
  Reserving size (30370648) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
  10%
  20%
  30%
  40%
  50%
  60%
  70%
  80%
  90%
  100%
  Block accumulator loop time: 00:00:02
  Sorting block of length 25051133
  (Using difference cover)
  Sorting block time: 00:00:18
Returning block of 25051134
Getting block 2 of 7
  Reserving size (30370648) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
  10%
  20%
  30%
  40%
  50%
  60%
  70%
  80%
  90%
  100%
  Block accumulator loop time: 00:00:03
  Sorting block of length 8766404
  (Using difference cover)
  Sorting block time: 00:00:09
Returning block of 8766405
Getting block 3 of 7
  Reserving size (30370648) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
  10%
  20%
  30%
  40%
  50%
  60%
  70%
  80%
  90%
  100%
  Block accumulator loop time: 00:00:03
  Sorting block of length 28991892
  (Using difference cover)
  Sorting block time: 00:00:24
Returning block of 28991893
Getting block 4 of 7
  Reserving size (30370648) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
  10%
  20%
  30%
  40%
  50%
  60%
  70%
  80%
  90%
  100%
  Block accumulator loop time: 00:00:04
  Sorting block of length 30197734
  (Using difference cover)
  Sorting block time: 00:00:31
Returning block of 30197735
Getting block 5 of 7
  Reserving size (30370648) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
  10%
  20%
  30%
  40%
  50%
  60%
  70%
  80%
  90%
  100%
  Block accumulator loop time: 00:00:04
  Sorting block of length 27810958
  (Using difference cover)
  Sorting block time: 00:00:22
Returning block of 27810959
Getting block 6 of 7
  Reserving size (30370648) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
  10%
  20%
  30%
  40%
  50%
  60%
  70%
  80%
  90%
  100%
  Block accumulator loop time: 00:00:03
  Sorting block of length 24285444
  (Using difference cover)
  Sorting block time: 00:00:20
Returning block of 24285445
Getting block 7 of 7
  Reserving size (30370648) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
  10%
  20%
  30%
  40%
  50%
  60%
  70%
  80%
  90%
  100%
  Block accumulator loop time: 00:00:02
  Sorting block of length 16873219
  (Using difference cover)
  Sorting block time: 00:00:13
Returning block of 16873220
Exited Ebwt loop
fchr[A]: 0
fchr[C]: 49877207
fchr[G]: 80957283
fchr[T]: 112166902
fchr[$]: 161976790
Exiting Ebwt::buildToDisk()
Returning from initFromVector
Wrote 286038342 bytes to primary EBWT file: Tsu_0//tmp/segment_juncs.rev.1.ebwt
Wrote 20247104 bytes to secondary EBWT file: Tsu_0//tmp/segment_juncs.rev.2.ebwt
Re-opening _in1 and _in2 as input streams
Returning from Ebwt constructor
Headers:
    len: 161976790
    bwtLen: 161976791
    sz: 40494198
    bwtSz: 40494198
    lineRate: 6
    linesPerSide: 1
    offRate: 5
    offMask: 0xffffffe0
    isaRate: -1
    isaMask: 0xffffffff
    ftabChars: 10
    eftabLen: 20
    eftabSz: 80
    ftabLen: 1048577
    ftabSz: 4194308
    offsLen: 5061775
    offsSz: 20247100
    isaLen: 0
    isaSz: 0
    lineSz: 64
    sideSz: 64
    sideBwtSz: 56
    sideBwtLen: 224
    numSidePairs: 361556
    numSides: 723112
    numLines: 723112
    ebwtTotLen: 46279168
    ebwtTotSz: 46279168
    reverse: 0
Total time for backward call to driver() for mirror index: 00:03:59