Settings:
  Output files: "Zu_0//tmp/segment_juncs.*.ebwt"
  Line rate: 6 (line is 64 bytes)
  Lines per side: 1 (side is 64 bytes)
  Offset rate: 5 (one in 32)
  FTable chars: 10
  Strings: unpacked
  Max bucket size: default
  Max bucket size, sqrt multiplier: default
  Max bucket size, len divisor: 4
  Difference-cover sample period: 1024
  Endianness: little
  Actual local endianness: little
  Sanity checking: disabled
  Assertions: disabled
  Random seed: 0
  Sizeofs: void*:8, int:4, long:8, size_t:8
Input files DNA, FASTA:
  Zu_0//tmp/segment_juncs.fa
Reading reference sizes
  Time reading reference sizes: 00:00:09
Calculating joined length
Writing header
Reserving space for joined string
Joining reference sequences
  Time to join reference sequences: 00:00:14
bmax according to bmaxDivN setting: 37854639
Using parameters --bmax 28390980 --dcv 1024
  Doing ahead-of-time memory usage test
  Passed!  Constructing with these parameters: --bmax 28390980 --dcv 1024
Constructing suffix-array element generator
Building DifferenceCoverSample
  Building sPrime
  Building sPrimeOrder
  V-Sorting samples
  V-Sorting samples time: 00:00:16
  Allocating rank array
  Ranking v-sort output
  Ranking v-sort output time: 00:00:04
  Invoking Larsson-Sadakane on ranks
  Invoking Larsson-Sadakane on ranks time: 00:00:08
  Sanity-checking and returning
Building samples
Reserving space for 12 sample suffixes
Generating random suffixes
QSorting 12 sample offsets, eliminating duplicates
QSorting sample offsets, eliminating duplicates time: 00:00:00
Multikey QSorting 12 samples
  (Using difference cover)
  Multikey QSorting samples time: 00:00:00
Calculating bucket sizes
  Binary sorting into buckets
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  Binary sorting into buckets time: 00:00:24
Splitting and merging
  Splitting and merging time: 00:00:00
Split 1, merged 7; iterating...
  Binary sorting into buckets
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  Binary sorting into buckets time: 00:00:21
Splitting and merging
  Splitting and merging time: 00:00:00
Avg bucket size: 2.16312e+07 (target: 28390979)
Converting suffix-array elements to index image
Allocating ftab, absorbFtab
Entering Ebwt loop
Getting block 1 of 7
  Reserving size (28390980) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:07
  Sorting block of length 11930521
  (Using difference cover)
  Sorting block time: 00:00:17
Returning block of 11930522
Getting block 2 of 7
  Reserving size (28390980) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:08
  Sorting block of length 24750045
  (Using difference cover)
  Sorting block time: 00:00:42
Returning block of 24750046
Getting block 3 of 7
  Reserving size (28390980) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:07
  Sorting block of length 24220040
  (Using difference cover)
  Sorting block time: 00:00:39
Returning block of 24220041
Getting block 4 of 7
  Reserving size (28390980) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:07
  Sorting block of length 15274317
  (Using difference cover)
  Sorting block time: 00:00:29
Returning block of 15274318
Getting block 5 of 7
  Reserving size (28390980) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:08
  Sorting block of length 26391961
  (Using difference cover)
  Sorting block time: 00:00:38
Returning block of 26391962
Getting block 6 of 7
  Reserving size (28390980) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:07
  Sorting block of length 23804951
  (Using difference cover)
  Sorting block time: 00:00:38
Returning block of 23804952
Getting block 7 of 7
  Reserving size (28390980) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:06
  Sorting block of length 25046718
  (Using difference cover)
  Sorting block time: 00:00:35
Returning block of 25046719
Exited Ebwt loop
fchr[A]: 0
fchr[C]: 46650165
fchr[G]: 75720617
fchr[T]: 104868883
fchr[$]: 151418559
Exiting Ebwt::buildToDisk()
Returning from initFromVector
Wrote 267607098 bytes to primary EBWT file: Zu_0//tmp/segment_juncs.1.ebwt
Wrote 18927324 bytes to secondary EBWT file: Zu_0//tmp/segment_juncs.2.ebwt
Re-opening _in1 and _in2 as input streams
Returning from Ebwt constructor
Headers:
    len: 151418559
    bwtLen: 151418560
    sz: 37854640
    bwtSz: 37854640
    lineRate: 6
    linesPerSide: 1
    offRate: 5
    offMask: 0xffffffe0
    isaRate: -1
    isaMask: 0xffffffff
    ftabChars: 10
    eftabLen: 20
    eftabSz: 80
    ftabLen: 1048577
    ftabSz: 4194308
    offsLen: 4731830
    offsSz: 18927320
    isaLen: 0
    isaSz: 0
    lineSz: 64
    sideSz: 64
    sideBwtSz: 56
    sideBwtLen: 224
    numSidePairs: 337988
    numSides: 675976
    numLines: 675976
    ebwtTotLen: 43262464
    ebwtTotSz: 43262464
    reverse: 0
Total time for call to driver() for forward index: 00:07:28
Reading reference sizes
  Time reading reference sizes: 00:00:05
Calculating joined length
Writing header
Reserving space for joined string
Joining reference sequences
  Time to join reference sequences: 00:00:14
bmax according to bmaxDivN setting: 37854639
Using parameters --bmax 28390980 --dcv 1024
  Doing ahead-of-time memory usage test
  Passed!  Constructing with these parameters: --bmax 28390980 --dcv 1024
Constructing suffix-array element generator
Building DifferenceCoverSample
  Building sPrime
  Building sPrimeOrder
  V-Sorting samples
  V-Sorting samples time: 00:00:14
  Allocating rank array
  Ranking v-sort output
  Ranking v-sort output time: 00:00:03
  Invoking Larsson-Sadakane on ranks
  Invoking Larsson-Sadakane on ranks time: 00:00:07
  Sanity-checking and returning
Building samples
Reserving space for 12 sample suffixes
Generating random suffixes
QSorting 12 sample offsets, eliminating duplicates
QSorting sample offsets, eliminating duplicates time: 00:00:00
Multikey QSorting 12 samples
  (Using difference cover)
  Multikey QSorting samples time: 00:00:00
Calculating bucket sizes
  Binary sorting into buckets
  10%
  20%
  30%
  40%
  50%
  60%
  70%
  80%
  90%
  100%
  Binary sorting into buckets time: 00:00:21
Splitting and merging
  Splitting and merging time: 00:00:00
Avg bucket size: 1.89273e+07 (target: 28390979)
Converting suffix-array elements to index image
Allocating ftab, absorbFtab
Entering Ebwt loop
Getting block 1 of 8
  Reserving size (28390980) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:04
  Sorting block of length 22480641
  (Using difference cover)
  Sorting block time: 00:00:26
Returning block of 22480642
Getting block 2 of 8
  Reserving size (28390980) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:05
  Sorting block of length 12703743
  (Using difference cover)
  Sorting block time: 00:00:12
Returning block of 12703744
Getting block 3 of 8
  Reserving size (28390980) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:04
  Sorting block of length 27657294
  (Using difference cover)
  Sorting block time: 00:00:28
Returning block of 27657295
Getting block 4 of 8
  Reserving size (28390980) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:04
  Sorting block of length 19474696
  (Using difference cover)
  Sorting block time: 00:00:23
Returning block of 19474697
Getting block 5 of 8
  Reserving size (28390980) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:04
  Sorting block of length 12072699
  (Using difference cover)
  Sorting block time: 00:00:12
Returning block of 12072700
Getting block 6 of 8
  Reserving size (28390980) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:03
  Sorting block of length 17841055
  (Using difference cover)
  Sorting block time: 00:00:11
Returning block of 17841056
Getting block 7 of 8
  Reserving size (28390980) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:03
  Sorting block of length 26746419
  (Using difference cover)
  Sorting block time: 00:00:19
Returning block of 26746420
Getting block 8 of 8
  Reserving size (28390980) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:02
  Sorting block of length 12442005
  (Using difference cover)
  Sorting block time: 00:00:09
Returning block of 12442006
Exited Ebwt loop
fchr[A]: 0
fchr[C]: 46650165
fchr[G]: 75720617
fchr[T]: 104868883
fchr[$]: 151418559
Exiting Ebwt::buildToDisk()
Returning from initFromVector
Wrote 267607098 bytes to primary EBWT file: Zu_0//tmp/segment_juncs.rev.1.ebwt
Wrote 18927324 bytes to secondary EBWT file: Zu_0//tmp/segment_juncs.rev.2.ebwt
Re-opening _in1 and _in2 as input streams
Returning from Ebwt constructor
Headers:
    len: 151418559
    bwtLen: 151418560
    sz: 37854640
    bwtSz: 37854640
    lineRate: 6
    linesPerSide: 1
    offRate: 5
    offMask: 0xffffffe0
    isaRate: -1
    isaMask: 0xffffffff
    ftabChars: 10
    eftabLen: 20
    eftabSz: 80
    ftabLen: 1048577
    ftabSz: 4194308
    offsLen: 4731830
    offsSz: 18927320
    isaLen: 0
    isaSz: 0
    lineSz: 64
    sideSz: 64
    sideBwtSz: 56
    sideBwtLen: 224
    numSidePairs: 337988
    numSides: 675976
    numLines: 675976
    ebwtTotLen: 43262464
    ebwtTotSz: 43262464
    reverse: 0
Total time for backward call to driver() for mirror index: 00:04:27