Settings:
  Output files: "./bur_0.TOnovel/tmp/segment_juncs.*.ebwt"
  Line rate: 6 (line is 64 bytes)
  Lines per side: 1 (side is 64 bytes)
  Offset rate: 5 (one in 32)
  FTable chars: 10
  Strings: unpacked
  Max bucket size: default
  Max bucket size, sqrt multiplier: default
  Max bucket size, len divisor: 4
  Difference-cover sample period: 1024
  Endianness: little
  Actual local endianness: little
  Sanity checking: disabled
  Assertions: disabled
  Random seed: 0
  Sizeofs: void*:8, int:4, long:8, size_t:8
Input files DNA, FASTA:
  ./bur_0.TOnovel/tmp/segment_juncs.fa
Reading reference sizes
  Time reading reference sizes: 00:00:00
Calculating joined length
Writing header
Reserving space for joined string
Joining reference sequences
  Time to join reference sequences: 00:00:00
bmax according to bmaxDivN setting: 2299
Using parameters --bmax 1725 --dcv 1024
  Doing ahead-of-time memory usage test
  Passed!  Constructing with these parameters: --bmax 1725 --dcv 1024
Constructing suffix-array element generator
Building DifferenceCoverSample
  Building sPrime
  Building sPrimeOrder
  V-Sorting samples
  V-Sorting samples time: 00:00:00
  Allocating rank array
  Ranking v-sort output
  Ranking v-sort output time: 00:00:00
  Invoking Larsson-Sadakane on ranks
  Invoking Larsson-Sadakane on ranks time: 00:00:00
  Sanity-checking and returning
Building samples
Reserving space for 12 sample suffixes
Generating random suffixes
QSorting 12 sample offsets, eliminating duplicates
QSorting sample offsets, eliminating duplicates time: 00:00:00
Multikey QSorting 12 samples
  (Using difference cover)
  Multikey QSorting samples time: 00:00:00
Calculating bucket sizes
  Binary sorting into buckets
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  Binary sorting into buckets time: 00:00:00
Splitting and merging
  Splitting and merging time: 00:00:00
Avg bucket size: 1312.86 (target: 1724)
Converting suffix-array elements to index image
Allocating ftab, absorbFtab
Entering Ebwt loop
Getting block 1 of 7
  Reserving size (1725) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:00
  Sorting block of length 1142
  (Using difference cover)
  Sorting block time: 00:00:00
Returning block of 1143
Getting block 2 of 7
  Reserving size (1725) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:00
  Sorting block of length 1064
  (Using difference cover)
  Sorting block time: 00:00:00
Returning block of 1065
Getting block 3 of 7
  Reserving size (1725) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:00
  Sorting block of length 1549
  (Using difference cover)
  Sorting block time: 00:00:00
Returning block of 1550
Getting block 4 of 7
  Reserving size (1725) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:00
  Sorting block of length 1320
  (Using difference cover)
  Sorting block time: 00:00:00
Returning block of 1321
Getting block 5 of 7
  Reserving size (1725) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:00
  Sorting block of length 1590
  (Using difference cover)
  Sorting block time: 00:00:00
Returning block of 1591
Getting block 6 of 7
  Reserving size (1725) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:00
  Sorting block of length 880
  (Using difference cover)
  Sorting block time: 00:00:00
Returning block of 881
Getting block 7 of 7
  Reserving size (1725) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:00
  Sorting block of length 1645
  (Using difference cover)
  Sorting block time: 00:00:00
Returning block of 1646
Exited Ebwt loop
fchr[A]: 0
fchr[C]: 2569
fchr[G]: 4281
fchr[T]: 6124
fchr[$]: 9196
Exiting Ebwt::buildToDisk()
Returning from initFromVector
Wrote 4211881 bytes to primary EBWT file: ./bur_0.TOnovel/tmp/segment_juncs.1.ebwt
Wrote 1156 bytes to secondary EBWT file: ./bur_0.TOnovel/tmp/segment_juncs.2.ebwt
Re-opening _in1 and _in2 as input streams
Returning from Ebwt constructor
Headers:
    len: 9196
    bwtLen: 9197
    sz: 2299
    bwtSz: 2300
    lineRate: 6
    linesPerSide: 1
    offRate: 5
    offMask: 0xffffffe0
    isaRate: -1
    isaMask: 0xffffffff
    ftabChars: 10
    eftabLen: 20
    eftabSz: 80
    ftabLen: 1048577
    ftabSz: 4194308
    offsLen: 288
    offsSz: 1152
    isaLen: 0
    isaSz: 0
    lineSz: 64
    sideSz: 64
    sideBwtSz: 56
    sideBwtLen: 224
    numSidePairs: 21
    numSides: 42
    numLines: 42
    ebwtTotLen: 2688
    ebwtTotSz: 2688
    reverse: 0
Total time for call to driver() for forward index: 00:00:00
Reading reference sizes
  Time reading reference sizes: 00:00:00
Calculating joined length
Writing header
Reserving space for joined string
Joining reference sequences
  Time to join reference sequences: 00:00:00
bmax according to bmaxDivN setting: 2299
Using parameters --bmax 1725 --dcv 1024
  Doing ahead-of-time memory usage test
  Passed!  Constructing with these parameters: --bmax 1725 --dcv 1024
Constructing suffix-array element generator
Building DifferenceCoverSample
  Building sPrime
  Building sPrimeOrder
  V-Sorting samples
  V-Sorting samples time: 00:00:00
  Allocating rank array
  Ranking v-sort output
  Ranking v-sort output time: 00:00:00
  Invoking Larsson-Sadakane on ranks
  Invoking Larsson-Sadakane on ranks time: 00:00:00
  Sanity-checking and returning
Building samples
Reserving space for 12 sample suffixes
Generating random suffixes
QSorting 12 sample offsets, eliminating duplicates
QSorting sample offsets, eliminating duplicates time: 00:00:00
Multikey QSorting 12 samples
  (Using difference cover)
  Multikey QSorting samples time: 00:00:00
Calculating bucket sizes
  Binary sorting into buckets
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  20%
  30%
  40%
  50%
  60%
  70%
  80%
  90%
  100%
  Binary sorting into buckets time: 00:00:00
Splitting and merging
  Splitting and merging time: 00:00:00
Avg bucket size: 1312.86 (target: 1724)
Converting suffix-array elements to index image
Allocating ftab, absorbFtab
Entering Ebwt loop
Getting block 1 of 7
  Reserving size (1725) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:00
  Sorting block of length 928
  (Using difference cover)
  Sorting block time: 00:00:00
Returning block of 929
Getting block 2 of 7
  Reserving size (1725) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:00
  Sorting block of length 852
  (Using difference cover)
  Sorting block time: 00:00:00
Returning block of 853
Getting block 3 of 7
  Reserving size (1725) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:00
  Sorting block of length 1650
  (Using difference cover)
  Sorting block time: 00:00:00
Returning block of 1651
Getting block 4 of 7
  Reserving size (1725) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:00
  Sorting block of length 1633
  (Using difference cover)
  Sorting block time: 00:00:00
Returning block of 1634
Getting block 5 of 7
  Reserving size (1725) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:00
  Sorting block of length 831
  (Using difference cover)
  Sorting block time: 00:00:00
Returning block of 832
Getting block 6 of 7
  Reserving size (1725) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:00
  Sorting block of length 1649
  (Using difference cover)
  Sorting block time: 00:00:00
Returning block of 1650
Getting block 7 of 7
  Reserving size (1725) for bucket
  Calculating Z arrays
  Calculating Z arrays time: 00:00:00
  Entering block accumulator loop:
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  Block accumulator loop time: 00:00:00
  Sorting block of length 1647
  (Using difference cover)
  Sorting block time: 00:00:00
Returning block of 1648
Exited Ebwt loop
fchr[A]: 0
fchr[C]: 2569
fchr[G]: 4281
fchr[T]: 6124
fchr[$]: 9196
Exiting Ebwt::buildToDisk()
Returning from initFromVector
Wrote 4211881 bytes to primary EBWT file: ./bur_0.TOnovel/tmp/segment_juncs.rev.1.ebwt
Wrote 1156 bytes to secondary EBWT file: ./bur_0.TOnovel/tmp/segment_juncs.rev.2.ebwt
Re-opening _in1 and _in2 as input streams
Returning from Ebwt constructor
Headers:
    len: 9196
    bwtLen: 9197
    sz: 2299
    bwtSz: 2300
    lineRate: 6
    linesPerSide: 1
    offRate: 5
    offMask: 0xffffffe0
    isaRate: -1
    isaMask: 0xffffffff
    ftabChars: 10
    eftabLen: 20
    eftabSz: 80
    ftabLen: 1048577
    ftabSz: 4194308
    offsLen: 288
    offsSz: 1152
    isaLen: 0
    isaSz: 0
    lineSz: 64
    sideSz: 64
    sideBwtSz: 56
    sideBwtLen: 224
    numSidePairs: 21
    numSides: 42
    numLines: 42
    ebwtTotLen: 2688
    ebwtTotSz: 2688
    reverse: 0
Total time for backward call to driver() for mirror index: 00:00:00