segment_juncs v1.2.0 (1752) --------------------------- Loading reference sequences... Loading CUFF.1649_From_zu_0_3082201_0...done Loading CUFF.1231_From_oy_0_2965192_0...done Loading CUFF.1337_From_sf_2_2662232_0...done Loading CUFF.1509_From_wu_0_2616263_0...done Loading CUFF.1149_From_mt_0_4217716_0...done Loading CUFF.1275_From_po_0_3332479_0...done Loading CUFF.1615_From_zu_0_3118546_0...done Loading CUFF.1211_From_po_0_3269389_0...done Loading CUFF.1519_From_wu_0_2597064_0...done Loading CUFF.1335_From_sf_2_2524453_0...done Loading CUFF.1507_From_wu_0_2587993_0...done Loading CUFF.1155_From_no_0_2905273_0...done Loading CUFF.1271_From_rsch_4_4034850_0...done Loading CUFF.1209_From_po_0_3295404_0...done Loading CUFF.1523_From_wu_0_2638225_0...done Loading CUFF.867_From_bur_0_1863298_0...done Loading CUFF.1349_From_mt_0_4528444_1...done Loading CUFF.995_From_hi_0_2751582_0...done Loading CUFF.981_From_hi_0_2690171_0...done Loading CUFF.1027_From_kn_0_3558357_0...done Loading CUFF.963_From_edi_0_2744702_0...done Loading CUFF.1503_From_wu_0_2588697_0...done Loading CUFF.1093_From_mt_0_4130072_0...done Loading CUFF.1219_From_po_0_3319326_0...done Loading CUFF.1119_From_hi_0_2939638_0...done Loading CUFF.1019_From_edi_0_2859720_0...done Loading CUFF.1547_From_wu_0_2685428_0...done Loading CUFF.1353_From_tsu_0_3002533_0...done Loading CUFF.1569_From_zu_0_3035650_0...done Loading CUFF.1141_From_mt_0_4449890_0...done Loading CUFF.1529_From_wu_0_2655159_0...done Loading CUFF.1045_From_kn_0_3605300_0...done Loading CUFF.1531_From_ws_0_3340488_0...done Loading CUFF.1497_From_ws_0_3380934_0...done Loading CUFF.1575_From_wu_0_2831218_0...done Loading CUFF.1013_From_kn_0_3532396_0...done Loading CUFF.1095_From_mt_0_4131964_0...done Loading CUFF.1079_From_mt_0_4085357_0...done Loading CUFF.921_From_can_0_3233581_0...done Loading CUFF.869_From_bur_0_1873494_0...done Loading CUFF.1081_From_mt_0_4099484_0...done Loading CUFF.1505_From_wu_0_2607348_0...done Loading CUFF.1427_From_ws_0_3077529_0...done Loading CUFF.1515_From_wu_0_2648785_0...done Loading CUFF.1285_From_rsch_4_4085063_0...done Loading CUFF.1153_From_no_0_2923846_0...done Loading CUFF.1307_From_rsch_4_4277566_0...done Loading CUFF.1281_From_oy_0_3121110_0...done Loading CUFF.1301_From_rsch_4_4111713_0...done Loading CUFF.907_From_can_0_3122480_0...done Loading CUFF.1213_From_po_0_3316390_0...done Loading CUFF.1535_From_wu_0_2676799_0...done Loading CUFF.1003_From_hi_0_2790034_0...done Loading CUFF.1395_From_wil_2_2904915_0...done Loading CUFF.1631_From_zu_0_3277661_1...done Loading CUFF.1109_From_mt_0_4194856_0...done Loading CUFF.1207_From_po_0_3308932_0...done Loading CUFF.1397_From_tsu_0_3228017_0...done Loading CUFF.1459_From_ws_0_3182508_0...done Loading CUFF.1613_From_zu_0_3259399_1...done Loading CUFF.1008_From_kn_0_3525938_0...done Loading CUFF.1495_From_ws_0_3371988_0...done Loading CUFF.1017_From_kn_0_3566907_0...done Loading CUFF.1165_From_no_0_2959683_0...done Loading CUFF.1493_From_wil_2_3087183_0...done Loading CUFF.1573_From_zu_0_3065917_0...done Loading CUFF.1099_From_mt_0_4177596_0...done Loading CUFF.1253_From_po_0_3387411_0...done Loading CUFF.1293_From_rsch_4_4107621_0...done Loading CUFF.1591_From_zu_0_3092045_0...done Loading CUFF.1313_From_po_0_3573778_0...done Loading CUFF.1117_From_hi_0_2939638_0...done Loading CUFF.895_From_can_0_3069992_0...done Loading CUFF.1069_From_hi_0_2916184_0...done Loading CUFF.1637_From_zu_0_3277661_0...done Loading CUFF.1163_From_no_0_2951521_0...done Loading CUFF.1611_From_zu_0_3255503_0...done Loading CUFF.1367_From_tsu_0_3135135_0...done Loading CUFF.1453_From_ws_0_3185408_0...done Loading CUFF.1599_From_zu_0_3200689_0...done Loading CUFF.1315_From_rsch_4_4277566_0...done Loading CUFF.1229_From_po_0_3339041_0...done Loading CUFF.1385_From_sf_2_2653966_0...done Loading CUFF.1617_From_zu_0_3278243_0...done Loading CUFF.1521_From_ws_0_3344070_0...done Loading CUFF.1061_From_ler_0_4016532_0...done Loading CUFF.927_From_ct_1_3108889_0...done Loading CUFF.901_From_can_0_3094988_0...done Loading CUFF.1625_From_zu_0_3243571_0...done Loading CUFF.1481_From_ws_0_3349444_1...done Loading CUFF.1629_From_zu_0_3287917_0...done Loading CUFF.1139_From_ler_0_4211779_1...done Loading CUFF.1287_From_rsch_4_4099439_0...done Loading CUFF.1101_From_mt_0_4188374_0...done Loading CUFF.953_From_edi_0_2759591_0...done Loading CUFF.973_From_edi_0_2871668_0...done Loading CUFF.1597_From_zu_0_3181459_0...done Loading CUFF.1465_From_ws_0_3190963_0...done Loading CUFF.1233_From_po_0_3365309_0...done Loading CUFF.991_From_edi_0_2891968_0...done Loading CUFF.1603_From_zu_0_3242889_0...done Loading CUFF.937_From_can_0_3239881_0...done Loading CUFF.993_From_hi_0_2787534_0...done Loading CUFF.1049_From_ler_0_4002120_0...done Loading CUFF.929_From_can_0_3263637_0...done Loading CUFF.1157_From_no_0_2939843_0...done Loading CUFF.1055_From_ler_0_4004770_0...done Loading CUFF.1539_From_wu_0_2702886_0...done Loading CUFF.989_From_edi_0_2932438_0...done Loading CUFF.1011_From_edi_0_2918156_0...done Loading CUFF.1593_From_zu_0_3112556_0...done Loading CUFF.1113_From_mt_0_4206392_0...done Loading CUFF.1431_From_ws_0_3170660_0...done Loading CUFF.1443_From_wil_2_3052273_0...done Loading CUFF.1533_From_wu_0_2683442_0...done Loading CUFF.881_From_bur_0_1969548_0...done Loading CUFF.1401_From_wil_2_3050523_0...done Loading CUFF.1527_From_wu_0_2675967_0...done Loading CUFF.1259_From_po_0_3402348_0...done Loading CUFF.1379_From_sf_2_2656790_0...done Loading CUFF.955_From_edi_0_2766531_0...done Loading CUFF.1295_From_rsch_4_4118037_0...done Loading CUFF.1007_From_edi_0_2888586_0...done Loading CUFF.935_From_bur_0_2020452_0...done Loading CUFF.1491_From_ws_0_3373966_0...done Loading CUFF.1563_From_ws_0_3381390_0...done Loading CUFF.1133_From_mt_0_4399784_0...done Loading CUFF.1251_From_po_0_3400198_0...done Loading CUFF.1121_From_mt_0_4226690_0...done Loading CUFF.1411_From_rsch_4_4266550_0...done Loading CUFF.1489_From_ws_0_3372620_0...done Loading CUFF.1463_From_ws_0_3190679_0...done Loading CUFF.1087_From_ler_0_4211779_0...done Loading CUFF.1559_From_wu_0_2824162_0...done Loading CUFF.983_From_ct_1_3241157_0...done Loading CUFF.1175_From_hi_0_2953648_0...done Loading CUFF.967_From_edi_0_2887084_2...done Loading CUFF.1455_From_wil_2_3068737_0...done Loading CUFF.1645_From_wu_0_2816600_0...done Loading CUFF.1473_From_ws_0_3293243_0...done Loading CUFF.1399_From_wil_2_2978735_0...done Loading CUFF.969_From_edi_0_2888616_0...done Loading CUFF.1305_From_rsch_4_4263688_0...done Loading CUFF.1373_From_tsu_0_3208747_0...done Loading CUFF.985_From_edi_0_2921730_0...done Loading CUFF.913_From_can_0_3217045_0...done Loading CUFF.1433_From_wil_2_3079625_0...done Loading CUFF.961_From_ct_1_3302721_0...done Loading CUFF.1601_From_zu_0_3250197_1...done Loading CUFF.1173_From_no_0_3113578_1...done Loading CUFF.1187_From_oy_0_3098144_0...done Loading CUFF.1351_From_tsu_0_3175121_0...done Loading CUFF.1543_From_ws_0_3373604_0...done Loading CUFF.1409_From_wil_2_3066229_0...done Loading CUFF.911_From_can_0_3230893_0...done Loading CUFF.1639_From_zu_0_3291057_0...done Loading CUFF.1075_From_edi_0_2906444_0...done Loading CUFF.1471_From_tsu_0_3212935_0...done Loading CUFF.1413_From_sf_2_2687786_0...done Loading CUFF.1167_From_no_0_3096552_0...done Loading CUFF.875_From_bur_0_1999718_0...done Loading CUFF.1475_From_ws_0_3313321_0...done Loading CUFF.1483_From_ws_0_3364198_0...done Loading CUFF.1565_From_zu_0_3075813_0...done Loading CUFF.1363_From_sf_2_2671632_0...done Loading CUFF.1197_From_oy_0_3103794_0...done Loading CUFF.1311_From_rsch_4_4275442_0...done Loading CUFF.1343_From_sf_2_2689374_0...done Loading CUFF.1339_From_sf_2_2689374_0...done Loading CUFF.1359_From_tsu_0_3148935_0...done Loading CUFF.1223_From_po_0_3340213_0...done Loading CUFF.1329_From_sf_2_2642906_0...done Loading CUFF.1407_From_wil_2_3063473_0...done Loading CUFF.1641_From_zu_0_3291057_0...done Loading CUFF.1035_From_kn_0_3751597_0...done Loading CUFF.1169_From_no_0_3101262_0...done Loading CUFF.1423_From_wil_2_3072219_0...done Loading CUFF.1361_From_tsu_0_3175121_0...done Loading CUFF.1325_From_sf_2_2626132_0...done Loading CUFF.1261_From_po_0_3599571_0...done Loading CUFF.1375_From_tsu_0_3211741_0...done Loading CUFF.1417_From_wil_2_3078633_1...done Loading CUFF.1583_From_wu_0_2829124_0...done Loading CUFF.1267_From_no_0_3128142_0...done Loading CUFF.1309_From_rsch_4_4307314_0...done Loading CUFF.1499_From_ws_0_3382714_0...done Loading CUFF.1177_From_no_0_3116640_0...done Loading CUFF.1605_From_zu_0_3257369_0...done Loading CUFF.865_From_bur_0_1967596_0...done Loading CUFF.949_From_can_0_3218459_0...done Loading CUFF.1419_From_sf_2_2701328_0...done Loading CUFF.1345_From_sf_2_2689374_0...done Loading CUFF.1619_From_zu_0_3280025_0...done Loading CUFF.1065_From_ler_0_4153595_0...done Loading CUFF.1595_From_zu_0_3238769_0...done Loading CUFF.1111_From_ler_0_4165287_0...done Loading CUFF.1215_From_oy_0_3162092_0...done Loading CUFF.975_From_edi_0_2902016_0...done Loading CUFF.1545_From_wu_0_2770362_0...done Loading CUFF.1089_From_ler_0_4224097_0...done Loading CUFF.943_From_ct_1_3247037_0...done Loading CUFF.1077_From_ler_0_4225073_0...done Loading CUFF.1607_From_zu_0_3255169_0...done Loading CUFF.1487_From_ws_0_3347582_0...done Loading CUFF.1643_From_wu_0_2816600_0...done Loading CUFF.1609_From_zu_0_3260873_0...done Loading CUFF.1189_From_oy_0_3115434_0...done Loading CUFF.1467_From_ws_0_3309675_0...done Loading CUFF.1553_From_wu_0_2806776_0...done Loading CUFF.1439_From_wil_2_3089541_0...done Loading CUFF.879_From_bur_0_2021834_0...done Loading CUFF.1265_From_po_0_3577252_0...done Loading CUFF.1073_From_ler_0_4209589_1...done Loading CUFF.1479_From_ws_0_3339092_0...done Loading CUFF.1451_From_wil_2_3077447_0...done Loading CUFF.1347_From_sf_2_2682779_0...done Loading CUFF.1635_From_zu_0_3263539_0...done Loading CUFF.1579_From_wu_0_2802868_0...done Loading CUFF.1365_From_tsu_0_3179519_0...done Loading CUFF.1513_From_ws_0_3381290_0...done Loading CUFF.915_From_can_0_3231205_0...done Loading CUFF.1383_From_tsu_0_3242833_1...done Loading CUFF.1415_From_wil_2_3082811_1...done Loading CUFF.1421_From_tsu_0_3215821_0...done Loading CUFF.919_From_can_0_3258779_0...done Loading CUFF.909_From_can_0_3223655_0...done Loading CUFF.1029_From_kn_0_3802200_0...done Loading CUFF.1393_From_tsu_0_3228555_0...done Loading CUFF.1437_From_wil_2_3088151_0...done Loading CUFF.1377_From_tsu_0_3215671_0...done Loading CUFF.1633_From_zu_0_3280213_0...done Loading CUFF.1333_From_sf_2_2666154_1...done Loading CUFF.1405_From_wil_2_3052951_0...done Loading CUFF.971_From_edi_0_2891226_0...done Loading CUFF.1623_From_zu_0_3289907_1...done Loading CUFF.1557_From_wu_0_2824308_0...done Loading CUFF.1015_From_hi_0_2966608_0...done Loading CUFF.951_From_ct_1_3280175_0...done Loading CUFF.1159_From_no_0_3088052_0...done Loading CUFF.1621_From_zu_0_3275363_0...done Loading CUFF.871_From_bur_0_2012810_0...done Loading CUFF.889_From_bur_0_2032354_0...done Loading CUFF.1647_From_zu_0_3289907_1...done Loading CUFF.1289_From_po_0_3606391_0...done Loading CUFF.1053_From_kn_0_3819922_1...done Loading CUFF.877_From_bur_0_2022518_0...done Loading CUFF.1371_From_tsu_0_3211333_0...done Loading CUFF.1279_From_po_0_3599571_0...done Loading CUFF.1577_From_wu_0_2832848_0...done Loading CUFF.1033_From_kn_0_3799876_0...done Loading CUFF.1561_From_wu_0_2827904_0...done Loading CUFF.1041_From_kn_0_3824150_0...done Loading CUFF.1369_From_sf_2_2700286_0...done Loading CUFF.1627_From_zu_0_3262887_0...done Loading CUFF.899_From_bur_0_2022518_0...done Loading CUFF.941_From_bur_0_2025286_0...done Loading CUFF.1585_From_wu_0_2837848_0...done Loading CUFF.1269_From_po_0_3606391_1...done Loading CUFF.1381_From_tsu_0_3240885_0...done Loading CUFF.1181_From_no_0_3120392_0...done Loading CUFF.1501_From_ws_0_3365892_0...done Loading CUFF.1425_From_wil_2_3091415_1...done Loading CUFF.1537_From_ws_0_3382500_0...done Loading CUFF.873_From_bur_0_2020452_0...done Loading CUFF.1277_From_po_0_3599571_0...done Loading CUFF.1447_From_wil_2_3091415_1...done Loading CUFF.897_From_bur_0_2022518_0...done Loading CUFF.997_From_edi_0_2934714_0...done Loading CUFF.977_From_edi_0_2934714_0...done Loading CUFF.979_From_edi_0_2934714_0...done Loading CUFF.1485_From_ws_0_3371988_0...done Loading left segment hits... Microaligned 2202 segments done. Found 193 potential split-segment junctions Found 17 potential small deletions Found 9 potential small insertions Indexing extensions in ./bur_0.TOnovel/tmp/left_kept_reads_seg1_missing.fq Indexing extensions in ./bur_0.TOnovel/tmp/left_kept_reads_seg2_missing.fq Indexing extensions in ./bur_0.TOnovel/tmp/left_kept_reads_seg3_missing.fq Total extensions: 43769365 Total extensions: 43769365 Total extensions: 43769365 Looking for junctions by island end pairings Adding hits from segment file 0 to coverage map Adding hits from segment file 1 to coverage map Adding hits from segment file 2 to coverage map Map covers 27123 bases Map covers 26816 bases in sufficiently long segments Map contains 307 good islands 10206 are left looking bases 8056 are right looking bases Collecting potential splice sites in islands reporting synthetic splice junctions... Examining donor-acceptor pairings in CUFF.1605_From_zu_0_3257369_0 Examining donor-acceptor pairings in CUFF.1329_From_sf_2_2642906_0 Examining donor-acceptor pairings in CUFF.1467_From_ws_0_3309675_0 Examining donor-acceptor pairings in CUFF.1253_From_po_0_3387411_0 Examining donor-acceptor pairings in CUFF.1035_From_kn_0_3751597_0 Examining donor-acceptor pairings in CUFF.1459_From_ws_0_3182508_0 Examining donor-acceptor pairings in CUFF.1219_From_po_0_3319326_0 Examining donor-acceptor pairings in CUFF.1597_From_zu_0_3181459_0 Examining donor-acceptor pairings in CUFF.1487_From_ws_0_3347582_0 Examining donor-acceptor pairings in CUFF.1275_From_po_0_3332479_0 Examining donor-acceptor pairings in CUFF.1531_From_ws_0_3340488_0 Examining donor-acceptor pairings in CUFF.1015_From_hi_0_2966608_0 Examining donor-acceptor pairings in CUFF.1537_From_ws_0_3382500_0 Examining donor-acceptor pairings in CUFF.1609_From_zu_0_3260873_0 Examining donor-acceptor pairings in CUFF.1621_From_zu_0_3275363_0 Examining donor-acceptor pairings in CUFF.989_From_edi_0_2932438_0 Examining donor-acceptor pairings in CUFF.1631_From_zu_0_3277661_1 Examining donor-acceptor pairings in CUFF.1073_From_ler_0_4209589_1 Examining donor-acceptor pairings in CUFF.1643_From_wu_0_2816600_0 Examining donor-acceptor pairings in CUFF.1265_From_po_0_3577252_0 Examining donor-acceptor pairings in CUFF.1637_From_zu_0_3277661_0 Examining donor-acceptor pairings in CUFF.911_From_can_0_3230893_0 Examining donor-acceptor pairings in CUFF.899_From_bur_0_2022518_0 Examining donor-acceptor pairings in CUFF.1189_From_oy_0_3115434_0 Examining donor-acceptor pairings in CUFF.1271_From_rsch_4_4034850_0 Examining donor-acceptor pairings in CUFF.1177_From_no_0_3116640_0 Examining donor-acceptor pairings in CUFF.879_From_bur_0_2021834_0 Examining donor-acceptor pairings in CUFF.869_From_bur_0_1873494_0 Examining donor-acceptor pairings in CUFF.937_From_can_0_3239881_0 Examining donor-acceptor pairings in CUFF.1197_From_oy_0_3103794_0 Examining donor-acceptor pairings in CUFF.921_From_can_0_3233581_0 Examining donor-acceptor pairings in CUFF.1289_From_po_0_3606391_0 Examining donor-acceptor pairings in CUFF.1385_From_sf_2_2653966_0 Examining donor-acceptor pairings in CUFF.1008_From_kn_0_3525938_0 Examining donor-acceptor pairings in CUFF.1369_From_sf_2_2700286_0 Examining donor-acceptor pairings in CUFF.1089_From_ler_0_4224097_0 Examining donor-acceptor pairings in CUFF.1533_From_wu_0_2683442_0 Examining donor-acceptor pairings in CUFF.955_From_edi_0_2766531_0 Examining donor-acceptor pairings in CUFF.1017_From_kn_0_3566907_0 Examining donor-acceptor pairings in CUFF.1109_From_mt_0_4194856_0 Examining donor-acceptor pairings in CUFF.1359_From_tsu_0_3148935_0 Examining donor-acceptor pairings in CUFF.1019_From_edi_0_2859720_0 Examining donor-acceptor pairings in CUFF.971_From_edi_0_2891226_0 Examining donor-acceptor pairings in CUFF.1233_From_po_0_3365309_0 Examining donor-acceptor pairings in CUFF.1361_From_tsu_0_3175121_0 Examining donor-acceptor pairings in CUFF.1251_From_po_0_3400198_0 Examining donor-acceptor pairings in CUFF.881_From_bur_0_1969548_0 Examining donor-acceptor pairings in CUFF.1167_From_no_0_3096552_0 Examining donor-acceptor pairings in CUFF.993_From_hi_0_2787534_0 Examining donor-acceptor pairings in CUFF.1483_From_ws_0_3364198_0 Examining donor-acceptor pairings in CUFF.1639_From_zu_0_3291057_0 Examining donor-acceptor pairings in CUFF.929_From_can_0_3263637_0 Examining donor-acceptor pairings in CUFF.1641_From_zu_0_3291057_0 Examining donor-acceptor pairings in CUFF.1349_From_mt_0_4528444_1 Examining donor-acceptor pairings in CUFF.1395_From_wil_2_2904915_0 Examining donor-acceptor pairings in CUFF.1547_From_wu_0_2685428_0 Examining donor-acceptor pairings in CUFF.897_From_bur_0_2022518_0 Examining donor-acceptor pairings in CUFF.1479_From_ws_0_3339092_0 Examining donor-acceptor pairings in CUFF.1535_From_wu_0_2676799_0 Examining donor-acceptor pairings in CUFF.1165_From_no_0_2959683_0 Examining donor-acceptor pairings in CUFF.1313_From_po_0_3573778_0 Examining donor-acceptor pairings in CUFF.871_From_bur_0_2012810_0 Examining donor-acceptor pairings in CUFF.935_From_bur_0_2020452_0 Examining donor-acceptor pairings in CUFF.1453_From_ws_0_3185408_0 Examining donor-acceptor pairings in CUFF.1163_From_no_0_2951521_0 Examining donor-acceptor pairings in CUFF.1553_From_wu_0_2806776_0 Examining donor-acceptor pairings in CUFF.1041_From_kn_0_3824150_0 Examining donor-acceptor pairings in CUFF.1309_From_rsch_4_4307314_0 Examining donor-acceptor pairings in CUFF.1211_From_po_0_3269389_0 Examining donor-acceptor pairings in CUFF.1625_From_zu_0_3243571_0 Examining donor-acceptor pairings in CUFF.941_From_bur_0_2025286_0 Examining donor-acceptor pairings in CUFF.875_From_bur_0_1999718_0 Examining donor-acceptor pairings in CUFF.1633_From_zu_0_3280213_0 Examining donor-acceptor pairings in CUFF.1301_From_rsch_4_4111713_0 Examining donor-acceptor pairings in CUFF.943_From_ct_1_3247037_0 Examining donor-acceptor pairings in CUFF.1491_From_ws_0_3373966_0 Examining donor-acceptor pairings in CUFF.969_From_edi_0_2888616_0 Examining donor-acceptor pairings in CUFF.1595_From_zu_0_3238769_0 Examining donor-acceptor pairings in CUFF.1619_From_zu_0_3280025_0 Examining donor-acceptor pairings in CUFF.1397_From_tsu_0_3228017_0 Examining donor-acceptor pairings in CUFF.1465_From_ws_0_3190963_0 Examining donor-acceptor pairings in CUFF.1011_From_edi_0_2918156_0 Examining donor-acceptor pairings in CUFF.1473_From_ws_0_3293243_0 Examining donor-acceptor pairings in CUFF.1417_From_wil_2_3078633_1 Examining donor-acceptor pairings in CUFF.1333_From_sf_2_2666154_1 Examining donor-acceptor pairings in CUFF.1423_From_wil_2_3072219_0 Examining donor-acceptor pairings in CUFF.963_From_edi_0_2744702_0 Examining donor-acceptor pairings in CUFF.1431_From_ws_0_3170660_0 Examining donor-acceptor pairings in CUFF.1421_From_tsu_0_3215821_0 Examining donor-acceptor pairings in CUFF.1401_From_wil_2_3050523_0 Examining donor-acceptor pairings in CUFF.877_From_bur_0_2022518_0 Examining donor-acceptor pairings in CUFF.1563_From_ws_0_3381390_0 Examining donor-acceptor pairings in CUFF.1475_From_ws_0_3313321_0 Examining donor-acceptor pairings in CUFF.1593_From_zu_0_3112556_0 Examining donor-acceptor pairings in CUFF.1181_From_no_0_3120392_0 Examining donor-acceptor pairings in CUFF.1267_From_no_0_3128142_0 Examining donor-acceptor pairings in CUFF.1209_From_po_0_3295404_0 Examining donor-acceptor pairings in CUFF.985_From_edi_0_2921730_0 Examining donor-acceptor pairings in CUFF.1645_From_wu_0_2816600_0 Examining donor-acceptor pairings in CUFF.865_From_bur_0_1967596_0 Examining donor-acceptor pairings in CUFF.1139_From_ler_0_4211779_1 Examining donor-acceptor pairings in CUFF.1087_From_ler_0_4211779_0 Examining donor-acceptor pairings in CUFF.1613_From_zu_0_3259399_1 Examining donor-acceptor pairings in CUFF.1607_From_zu_0_3255169_0 Found 27 potential island-end pairing junctions done Aligning 2202 microexon segments in 215 windows window 100 window 200 Checked 4404 segments against 215 windows for microexon junctions Found 3 potential microexon junctions -- microexon -- CUFF.1421_From_tsu_0_3215821_0 511 620 - CUFF.881_From_bur_0_1969548_0 441 618 + CUFF.1177_From_no_0_3116640_0 368 842 - -- done -- -- seg -- CUFF.1621_From_zu_0_3275363_0 347 464 + CUFF.1621_From_zu_0_3275363_0 347 470 - CUFF.1621_From_zu_0_3275363_0 349 473 + CUFF.1621_From_zu_0_3275363_0 353 473 + CUFF.1621_From_zu_0_3275363_0 358 473 + CUFF.1621_From_zu_0_3275363_0 364 464 + CUFF.1621_From_zu_0_3275363_0 364 470 - CUFF.1621_From_zu_0_3275363_0 368 465 - CUFF.1621_From_zu_0_3275363_0 368 473 - CUFF.1621_From_zu_0_3275363_0 378 473 + CUFF.1621_From_zu_0_3275363_0 380 457 + CUFF.1621_From_zu_0_3275363_0 384 473 + CUFF.1621_From_zu_0_3275363_0 387 465 - CUFF.1621_From_zu_0_3275363_0 387 473 - CUFF.1621_From_zu_0_3275363_0 390 457 + CUFF.1621_From_zu_0_3275363_0 390 459 - CUFF.1621_From_zu_0_3275363_0 393 457 + CUFF.1621_From_zu_0_3275363_0 394 465 - CUFF.1621_From_zu_0_3275363_0 394 473 - CUFF.1621_From_zu_0_3275363_0 399 457 + CUFF.1621_From_zu_0_3275363_0 399 459 - CUFF.1621_From_zu_0_3275363_0 401 457 + CUFF.1621_From_zu_0_3275363_0 401 459 - CUFF.1621_From_zu_0_3275363_0 405 459 - CUFF.1621_From_zu_0_3275363_0 405 464 + CUFF.1643_From_wu_0_2816600_0 33 111 + CUFF.1643_From_wu_0_2816600_0 33 121 - CUFF.1643_From_wu_0_2816600_0 37 107 - CUFF.1643_From_wu_0_2816600_0 39 111 + CUFF.1643_From_wu_0_2816600_0 39 116 + CUFF.1643_From_wu_0_2816600_0 39 121 - CUFF.1643_From_wu_0_2816600_0 47 107 + CUFF.1643_From_wu_0_2816600_0 47 118 + CUFF.1643_From_wu_0_2816600_0 56 111 + CUFF.1643_From_wu_0_2816600_0 56 116 + CUFF.1643_From_wu_0_2816600_0 61 118 + CUFF.1643_From_wu_0_2816600_0 65 121 - CUFF.1643_From_wu_0_2816600_0 65 135 + CUFF.921_From_can_0_3233581_0 75 134 + CUFF.921_From_can_0_3233581_0 77 138 - CUFF.921_From_can_0_3233581_0 80 134 + CUFF.921_From_can_0_3233581_0 81 138 - CUFF.921_From_can_0_3233581_0 84 144 + CUFF.921_From_can_0_3233581_0 86 144 + CUFF.921_From_can_0_3233581_0 90 144 + CUFF.955_From_edi_0_2766531_0 32 88 - CUFF.955_From_edi_0_2766531_0 32 96 + CUFF.955_From_edi_0_2766531_0 36 105 - CUFF.955_From_edi_0_2766531_0 44 103 - CUFF.1281_From_oy_0_3121110_0 113 208 + CUFF.1281_From_oy_0_3121110_0 128 208 + CUFF.1281_From_oy_0_3121110_0 137 208 + CUFF.1281_From_oy_0_3121110_0 138 209 - CUFF.1421_From_tsu_0_3215821_0 351 440 - CUFF.1421_From_tsu_0_3215821_0 354 429 + CUFF.1421_From_tsu_0_3215821_0 354 431 - CUFF.1421_From_tsu_0_3215821_0 356 440 + CUFF.1421_From_tsu_0_3215821_0 359 429 + CUFF.1421_From_tsu_0_3215821_0 359 431 - CUFF.1421_From_tsu_0_3215821_0 363 440 - CUFF.1421_From_tsu_0_3215821_0 365 440 - CUFF.1421_From_tsu_0_3215821_0 370 440 + CUFF.1421_From_tsu_0_3215821_0 372 440 + CUFF.1421_From_tsu_0_3215821_0 374 429 + CUFF.1421_From_tsu_0_3215821_0 380 433 - CUFF.1421_From_tsu_0_3215821_0 380 446 + CUFF.1421_From_tsu_0_3215821_0 486 603 + CUFF.1421_From_tsu_0_3215821_0 489 603 + CUFF.1421_From_tsu_0_3215821_0 489 606 - CUFF.1421_From_tsu_0_3215821_0 489 610 + CUFF.1421_From_tsu_0_3215821_0 493 616 + CUFF.1421_From_tsu_0_3215821_0 496 616 - CUFF.1421_From_tsu_0_3215821_0 501 616 + CUFF.1421_From_tsu_0_3215821_0 504 603 + CUFF.1421_From_tsu_0_3215821_0 504 610 + CUFF.1421_From_tsu_0_3215821_0 505 616 - CUFF.1421_From_tsu_0_3215821_0 507 603 + CUFF.1421_From_tsu_0_3215821_0 507 610 + CUFF.1421_From_tsu_0_3215821_0 511 616 - CUFF.1421_From_tsu_0_3215821_0 513 603 + CUFF.1421_From_tsu_0_3215821_0 513 606 - CUFF.1421_From_tsu_0_3215821_0 513 610 + CUFF.1421_From_tsu_0_3215821_0 515 603 + CUFF.1421_From_tsu_0_3215821_0 515 606 - CUFF.1421_From_tsu_0_3215821_0 515 610 + CUFF.1421_From_tsu_0_3215821_0 521 616 - CUFF.1421_From_tsu_0_3215821_0 523 616 - CUFF.1421_From_tsu_0_3215821_0 527 603 + CUFF.1421_From_tsu_0_3215821_0 529 616 + CUFF.1621_From_zu_0_3275363_0 347 475 - CUFF.1621_From_zu_0_3275363_0 347 487 + CUFF.1621_From_zu_0_3275363_0 349 480 + CUFF.1621_From_zu_0_3275363_0 353 480 + CUFF.1621_From_zu_0_3275363_0 358 480 + CUFF.1621_From_zu_0_3275363_0 364 475 - CUFF.1621_From_zu_0_3275363_0 364 487 + CUFF.1621_From_zu_0_3275363_0 368 480 - CUFF.1621_From_zu_0_3275363_0 378 480 + CUFF.1621_From_zu_0_3275363_0 380 464 + CUFF.1621_From_zu_0_3275363_0 384 480 + CUFF.1621_From_zu_0_3275363_0 387 480 - CUFF.1621_From_zu_0_3275363_0 390 464 + CUFF.1621_From_zu_0_3275363_0 390 470 - CUFF.1621_From_zu_0_3275363_0 393 464 + CUFF.1621_From_zu_0_3275363_0 394 480 - CUFF.1621_From_zu_0_3275363_0 399 464 + CUFF.1621_From_zu_0_3275363_0 399 470 - CUFF.1621_From_zu_0_3275363_0 401 464 + CUFF.1621_From_zu_0_3275363_0 401 470 - CUFF.1621_From_zu_0_3275363_0 405 470 - CUFF.1643_From_wu_0_2816600_0 33 113 + CUFF.1643_From_wu_0_2816600_0 33 125 - CUFF.1643_From_wu_0_2816600_0 37 118 - CUFF.1643_From_wu_0_2816600_0 39 113 + CUFF.1643_From_wu_0_2816600_0 39 125 - CUFF.1643_From_wu_0_2816600_0 39 135 + CUFF.1643_From_wu_0_2816600_0 47 118 + CUFF.1643_From_wu_0_2816600_0 47 132 + CUFF.1643_From_wu_0_2816600_0 56 113 + CUFF.1643_From_wu_0_2816600_0 56 135 + CUFF.1643_From_wu_0_2816600_0 61 132 + CUFF.1643_From_wu_0_2816600_0 65 125 - CUFF.921_From_can_0_3233581_0 75 136 + CUFF.921_From_can_0_3233581_0 80 136 + CUFF.955_From_edi_0_2766531_0 32 103 - CUFF.955_From_edi_0_2766531_0 44 107 - CUFF.1281_From_oy_0_3121110_0 113 213 + CUFF.1281_From_oy_0_3121110_0 128 213 + CUFF.1281_From_oy_0_3121110_0 137 213 + CUFF.1281_From_oy_0_3121110_0 138 218 - CUFF.1421_From_tsu_0_3215821_0 354 433 - CUFF.1421_From_tsu_0_3215821_0 354 446 + CUFF.1421_From_tsu_0_3215821_0 359 433 - CUFF.1421_From_tsu_0_3215821_0 359 446 + CUFF.1421_From_tsu_0_3215821_0 374 446 + CUFF.1421_From_tsu_0_3215821_0 380 451 - CUFF.1421_From_tsu_0_3215821_0 486 610 + CUFF.1421_From_tsu_0_3215821_0 489 610 + CUFF.1421_From_tsu_0_3215821_0 493 620 + CUFF.1421_From_tsu_0_3215821_0 496 620 - CUFF.1421_From_tsu_0_3215821_0 501 620 + CUFF.1421_From_tsu_0_3215821_0 504 610 + CUFF.1421_From_tsu_0_3215821_0 505 620 - CUFF.1421_From_tsu_0_3215821_0 507 610 + CUFF.1421_From_tsu_0_3215821_0 511 620 - CUFF.1421_From_tsu_0_3215821_0 513 610 + CUFF.1421_From_tsu_0_3215821_0 515 610 + CUFF.1421_From_tsu_0_3215821_0 521 620 - CUFF.1421_From_tsu_0_3215821_0 523 620 - CUFF.1421_From_tsu_0_3215821_0 527 610 + CUFF.1421_From_tsu_0_3215821_0 529 620 + CUFF.1621_From_zu_0_3275363_0 347 484 - CUFF.1621_From_zu_0_3275363_0 349 489 + CUFF.1621_From_zu_0_3275363_0 353 489 + CUFF.1621_From_zu_0_3275363_0 358 489 + CUFF.1621_From_zu_0_3275363_0 364 484 - CUFF.1621_From_zu_0_3275363_0 368 489 - CUFF.1621_From_zu_0_3275363_0 378 489 + CUFF.1621_From_zu_0_3275363_0 390 475 - CUFF.1621_From_zu_0_3275363_0 399 475 - CUFF.1621_From_zu_0_3275363_0 401 475 - CUFF.1621_From_zu_0_3275363_0 405 475 - CUFF.1643_From_wu_0_2816600_0 33 116 + CUFF.1643_From_wu_0_2816600_0 37 132 - CUFF.1643_From_wu_0_2816600_0 39 116 + CUFF.1643_From_wu_0_2816600_0 47 132 + CUFF.1643_From_wu_0_2816600_0 47 138 + CUFF.1643_From_wu_0_2816600_0 56 116 + CUFF.1643_From_wu_0_2816600_0 61 138 + CUFF.955_From_edi_0_2766531_0 32 107 - CUFF.1281_From_oy_0_3121110_0 113 217 + CUFF.1281_From_oy_0_3121110_0 128 217 + CUFF.1281_From_oy_0_3121110_0 137 217 + CUFF.1281_From_oy_0_3121110_0 138 221 - CUFF.1421_From_tsu_0_3215821_0 354 451 - CUFF.1421_From_tsu_0_3215821_0 359 451 - CUFF.1421_From_tsu_0_3215821_0 496 637 - CUFF.1421_From_tsu_0_3215821_0 501 637 + CUFF.1421_From_tsu_0_3215821_0 505 637 - CUFF.1421_From_tsu_0_3215821_0 511 637 - CUFF.1421_From_tsu_0_3215821_0 521 637 - CUFF.1421_From_tsu_0_3215821_0 523 637 - CUFF.1643_From_wu_0_2816600_0 33 135 + CUFF.1643_From_wu_0_2816600_0 39 135 + CUFF.1643_From_wu_0_2816600_0 56 135 + CUFF.1281_From_oy_0_3121110_0 113 229 + CUFF.1281_From_oy_0_3121110_0 128 229 + CUFF.1281_From_oy_0_3121110_0 137 229 + CUFF.1281_From_oy_0_3121110_0 138 223 - CUFF.1281_From_oy_0_3121110_0 113 232 + CUFF.1281_From_oy_0_3121110_0 128 232 + CUFF.1281_From_oy_0_3121110_0 137 232 + CUFF.1281_From_oy_0_3121110_0 138 230 - -- done -- -- cov -- CUFF.1605_From_zu_0_3257369_0 29 284 + CUFF.911_From_can_0_3230893_0 26 96 + CUFF.1309_From_rsch_4_4307314_0 28 156 - CUFF.1605_From_zu_0_3257369_0 29 287 + CUFF.1163_From_no_0_2951521_0 31 88 + CUFF.1309_From_rsch_4_4307314_0 28 173 - CUFF.1605_From_zu_0_3257369_0 29 296 + CUFF.911_From_can_0_3230893_0 26 117 + CUFF.1163_From_no_0_2951521_0 31 92 + CUFF.1309_From_rsch_4_4307314_0 28 175 - CUFF.1421_From_tsu_0_3215821_0 511 620 - CUFF.1309_From_rsch_4_4307314_0 28 198 - CUFF.1605_From_zu_0_3257369_0 29 313 + CUFF.1621_From_zu_0_3275363_0 368 480 - CUFF.911_From_can_0_3230893_0 26 360 + CUFF.1309_From_rsch_4_4307314_0 28 338 - CUFF.1605_From_zu_0_3257369_0 29 378 + CUFF.1641_From_zu_0_3291057_0 468 654 - CUFF.1309_From_rsch_4_4307314_0 28 357 - CUFF.1605_From_zu_0_3257369_0 29 391 + CUFF.911_From_can_0_3230893_0 26 381 + CUFF.1639_From_zu_0_3291057_0 657 864 + CUFF.1605_From_zu_0_3257369_0 29 403 + CUFF.911_From_can_0_3230893_0 26 387 + CUFF.1605_From_zu_0_3257369_0 29 576 + CUFF.911_From_can_0_3230893_0 26 396 + CUFF.1605_From_zu_0_3257369_0 29 615 + -- done -- -- buf -- -- done -- Reporting potential splice junctions...done Reported 209 total possible splices Reporting potential deletions... Reporting potential insertions...