segment_juncs v1.2.0 (1752) --------------------------- Loading reference sequences... Loading CUFF.1649_From_zu_0_3082201_0...done Loading CUFF.1231_From_oy_0_2965192_0...done Loading CUFF.1337_From_sf_2_2662232_0...done Loading CUFF.1509_From_wu_0_2616263_0...done Loading CUFF.1149_From_mt_0_4217716_0...done Loading CUFF.1275_From_po_0_3332479_0...done Loading CUFF.1615_From_zu_0_3118546_0...done Loading CUFF.1211_From_po_0_3269389_0...done Loading CUFF.1519_From_wu_0_2597064_0...done Loading CUFF.1335_From_sf_2_2524453_0...done Loading CUFF.1507_From_wu_0_2587993_0...done Loading CUFF.1155_From_no_0_2905273_0...done Loading CUFF.1271_From_rsch_4_4034850_0...done Loading CUFF.1209_From_po_0_3295404_0...done Loading CUFF.1523_From_wu_0_2638225_0...done Loading CUFF.867_From_bur_0_1863298_0...done Loading CUFF.1349_From_mt_0_4528444_1...done Loading CUFF.995_From_hi_0_2751582_0...done Loading CUFF.981_From_hi_0_2690171_0...done Loading CUFF.1027_From_kn_0_3558357_0...done Loading CUFF.963_From_edi_0_2744702_0...done Loading CUFF.1503_From_wu_0_2588697_0...done Loading CUFF.1093_From_mt_0_4130072_0...done Loading CUFF.1219_From_po_0_3319326_0...done Loading CUFF.1119_From_hi_0_2939638_0...done Loading CUFF.1019_From_edi_0_2859720_0...done Loading CUFF.1547_From_wu_0_2685428_0...done Loading CUFF.1353_From_tsu_0_3002533_0...done Loading CUFF.1569_From_zu_0_3035650_0...done Loading CUFF.1141_From_mt_0_4449890_0...done Loading CUFF.1529_From_wu_0_2655159_0...done Loading CUFF.1045_From_kn_0_3605300_0...done Loading CUFF.1531_From_ws_0_3340488_0...done Loading CUFF.1497_From_ws_0_3380934_0...done Loading CUFF.1575_From_wu_0_2831218_0...done Loading CUFF.1013_From_kn_0_3532396_0...done Loading CUFF.1095_From_mt_0_4131964_0...done Loading CUFF.1079_From_mt_0_4085357_0...done Loading CUFF.921_From_can_0_3233581_0...done Loading CUFF.869_From_bur_0_1873494_0...done Loading CUFF.1081_From_mt_0_4099484_0...done Loading CUFF.1505_From_wu_0_2607348_0...done Loading CUFF.1427_From_ws_0_3077529_0...done Loading CUFF.1515_From_wu_0_2648785_0...done Loading CUFF.1285_From_rsch_4_4085063_0...done Loading CUFF.1153_From_no_0_2923846_0...done Loading CUFF.1307_From_rsch_4_4277566_0...done Loading CUFF.1281_From_oy_0_3121110_0...done Loading CUFF.1301_From_rsch_4_4111713_0...done Loading CUFF.907_From_can_0_3122480_0...done Loading CUFF.1213_From_po_0_3316390_0...done Loading CUFF.1535_From_wu_0_2676799_0...done Loading CUFF.1003_From_hi_0_2790034_0...done Loading CUFF.1395_From_wil_2_2904915_0...done Loading CUFF.1631_From_zu_0_3277661_1...done Loading CUFF.1109_From_mt_0_4194856_0...done Loading CUFF.1207_From_po_0_3308932_0...done Loading CUFF.1397_From_tsu_0_3228017_0...done Loading CUFF.1459_From_ws_0_3182508_0...done Loading CUFF.1613_From_zu_0_3259399_1...done Loading CUFF.1008_From_kn_0_3525938_0...done Loading CUFF.1495_From_ws_0_3371988_0...done Loading CUFF.1017_From_kn_0_3566907_0...done Loading CUFF.1165_From_no_0_2959683_0...done Loading CUFF.1493_From_wil_2_3087183_0...done Loading CUFF.1573_From_zu_0_3065917_0...done Loading CUFF.1099_From_mt_0_4177596_0...done Loading CUFF.1253_From_po_0_3387411_0...done Loading CUFF.1293_From_rsch_4_4107621_0...done Loading CUFF.1591_From_zu_0_3092045_0...done Loading CUFF.1313_From_po_0_3573778_0...done Loading CUFF.1117_From_hi_0_2939638_0...done Loading CUFF.895_From_can_0_3069992_0...done Loading CUFF.1069_From_hi_0_2916184_0...done Loading CUFF.1637_From_zu_0_3277661_0...done Loading CUFF.1163_From_no_0_2951521_0...done Loading CUFF.1611_From_zu_0_3255503_0...done Loading CUFF.1367_From_tsu_0_3135135_0...done Loading CUFF.1453_From_ws_0_3185408_0...done Loading CUFF.1599_From_zu_0_3200689_0...done Loading CUFF.1315_From_rsch_4_4277566_0...done Loading CUFF.1229_From_po_0_3339041_0...done Loading CUFF.1385_From_sf_2_2653966_0...done Loading CUFF.1617_From_zu_0_3278243_0...done Loading CUFF.1521_From_ws_0_3344070_0...done Loading CUFF.1061_From_ler_0_4016532_0...done Loading CUFF.927_From_ct_1_3108889_0...done Loading CUFF.901_From_can_0_3094988_0...done Loading CUFF.1625_From_zu_0_3243571_0...done Loading CUFF.1481_From_ws_0_3349444_1...done Loading CUFF.1629_From_zu_0_3287917_0...done Loading CUFF.1139_From_ler_0_4211779_1...done Loading CUFF.1287_From_rsch_4_4099439_0...done Loading CUFF.1101_From_mt_0_4188374_0...done Loading CUFF.953_From_edi_0_2759591_0...done Loading CUFF.973_From_edi_0_2871668_0...done Loading CUFF.1597_From_zu_0_3181459_0...done Loading CUFF.1465_From_ws_0_3190963_0...done Loading CUFF.1233_From_po_0_3365309_0...done Loading CUFF.991_From_edi_0_2891968_0...done Loading CUFF.1603_From_zu_0_3242889_0...done Loading CUFF.937_From_can_0_3239881_0...done Loading CUFF.993_From_hi_0_2787534_0...done Loading CUFF.1049_From_ler_0_4002120_0...done Loading CUFF.929_From_can_0_3263637_0...done Loading CUFF.1157_From_no_0_2939843_0...done Loading CUFF.1055_From_ler_0_4004770_0...done Loading CUFF.1539_From_wu_0_2702886_0...done Loading CUFF.989_From_edi_0_2932438_0...done Loading CUFF.1011_From_edi_0_2918156_0...done Loading CUFF.1593_From_zu_0_3112556_0...done Loading CUFF.1113_From_mt_0_4206392_0...done Loading CUFF.1431_From_ws_0_3170660_0...done Loading CUFF.1443_From_wil_2_3052273_0...done Loading CUFF.1533_From_wu_0_2683442_0...done Loading CUFF.881_From_bur_0_1969548_0...done Loading CUFF.1401_From_wil_2_3050523_0...done Loading CUFF.1527_From_wu_0_2675967_0...done Loading CUFF.1259_From_po_0_3402348_0...done Loading CUFF.1379_From_sf_2_2656790_0...done Loading CUFF.955_From_edi_0_2766531_0...done Loading CUFF.1295_From_rsch_4_4118037_0...done Loading CUFF.1007_From_edi_0_2888586_0...done Loading CUFF.935_From_bur_0_2020452_0...done Loading CUFF.1491_From_ws_0_3373966_0...done Loading CUFF.1563_From_ws_0_3381390_0...done Loading CUFF.1133_From_mt_0_4399784_0...done Loading CUFF.1251_From_po_0_3400198_0...done Loading CUFF.1121_From_mt_0_4226690_0...done Loading CUFF.1411_From_rsch_4_4266550_0...done Loading CUFF.1489_From_ws_0_3372620_0...done Loading CUFF.1463_From_ws_0_3190679_0...done Loading CUFF.1087_From_ler_0_4211779_0...done Loading CUFF.1559_From_wu_0_2824162_0...done Loading CUFF.983_From_ct_1_3241157_0...done Loading CUFF.1175_From_hi_0_2953648_0...done Loading CUFF.967_From_edi_0_2887084_2...done Loading CUFF.1455_From_wil_2_3068737_0...done Loading CUFF.1645_From_wu_0_2816600_0...done Loading CUFF.1473_From_ws_0_3293243_0...done Loading CUFF.1399_From_wil_2_2978735_0...done Loading CUFF.969_From_edi_0_2888616_0...done Loading CUFF.1305_From_rsch_4_4263688_0...done Loading CUFF.1373_From_tsu_0_3208747_0...done Loading CUFF.985_From_edi_0_2921730_0...done Loading CUFF.913_From_can_0_3217045_0...done Loading CUFF.1433_From_wil_2_3079625_0...done Loading CUFF.961_From_ct_1_3302721_0...done Loading CUFF.1601_From_zu_0_3250197_1...done Loading CUFF.1173_From_no_0_3113578_1...done Loading CUFF.1187_From_oy_0_3098144_0...done Loading CUFF.1351_From_tsu_0_3175121_0...done Loading CUFF.1543_From_ws_0_3373604_0...done Loading CUFF.1409_From_wil_2_3066229_0...done Loading CUFF.911_From_can_0_3230893_0...done Loading CUFF.1639_From_zu_0_3291057_0...done Loading CUFF.1075_From_edi_0_2906444_0...done Loading CUFF.1471_From_tsu_0_3212935_0...done Loading CUFF.1413_From_sf_2_2687786_0...done Loading CUFF.1167_From_no_0_3096552_0...done Loading CUFF.875_From_bur_0_1999718_0...done Loading CUFF.1475_From_ws_0_3313321_0...done Loading CUFF.1483_From_ws_0_3364198_0...done Loading CUFF.1565_From_zu_0_3075813_0...done Loading CUFF.1363_From_sf_2_2671632_0...done Loading CUFF.1197_From_oy_0_3103794_0...done Loading CUFF.1311_From_rsch_4_4275442_0...done Loading CUFF.1343_From_sf_2_2689374_0...done Loading CUFF.1339_From_sf_2_2689374_0...done Loading CUFF.1359_From_tsu_0_3148935_0...done Loading CUFF.1223_From_po_0_3340213_0...done Loading CUFF.1329_From_sf_2_2642906_0...done Loading CUFF.1407_From_wil_2_3063473_0...done Loading CUFF.1641_From_zu_0_3291057_0...done Loading CUFF.1035_From_kn_0_3751597_0...done Loading CUFF.1169_From_no_0_3101262_0...done Loading CUFF.1423_From_wil_2_3072219_0...done Loading CUFF.1361_From_tsu_0_3175121_0...done Loading CUFF.1325_From_sf_2_2626132_0...done Loading CUFF.1261_From_po_0_3599571_0...done Loading CUFF.1375_From_tsu_0_3211741_0...done Loading CUFF.1417_From_wil_2_3078633_1...done Loading CUFF.1583_From_wu_0_2829124_0...done Loading CUFF.1267_From_no_0_3128142_0...done Loading CUFF.1309_From_rsch_4_4307314_0...done Loading CUFF.1499_From_ws_0_3382714_0...done Loading CUFF.1177_From_no_0_3116640_0...done Loading CUFF.1605_From_zu_0_3257369_0...done Loading CUFF.865_From_bur_0_1967596_0...done Loading CUFF.949_From_can_0_3218459_0...done Loading CUFF.1419_From_sf_2_2701328_0...done Loading CUFF.1345_From_sf_2_2689374_0...done Loading CUFF.1619_From_zu_0_3280025_0...done Loading CUFF.1065_From_ler_0_4153595_0...done Loading CUFF.1595_From_zu_0_3238769_0...done Loading CUFF.1111_From_ler_0_4165287_0...done Loading CUFF.1215_From_oy_0_3162092_0...done Loading CUFF.975_From_edi_0_2902016_0...done Loading CUFF.1545_From_wu_0_2770362_0...done Loading CUFF.1089_From_ler_0_4224097_0...done Loading CUFF.943_From_ct_1_3247037_0...done Loading CUFF.1077_From_ler_0_4225073_0...done Loading CUFF.1607_From_zu_0_3255169_0...done Loading CUFF.1487_From_ws_0_3347582_0...done Loading CUFF.1643_From_wu_0_2816600_0...done Loading CUFF.1609_From_zu_0_3260873_0...done Loading CUFF.1189_From_oy_0_3115434_0...done Loading CUFF.1467_From_ws_0_3309675_0...done Loading CUFF.1553_From_wu_0_2806776_0...done Loading CUFF.1439_From_wil_2_3089541_0...done Loading CUFF.879_From_bur_0_2021834_0...done Loading CUFF.1265_From_po_0_3577252_0...done Loading CUFF.1073_From_ler_0_4209589_1...done Loading CUFF.1479_From_ws_0_3339092_0...done Loading CUFF.1451_From_wil_2_3077447_0...done Loading CUFF.1347_From_sf_2_2682779_0...done Loading CUFF.1635_From_zu_0_3263539_0...done Loading CUFF.1579_From_wu_0_2802868_0...done Loading CUFF.1365_From_tsu_0_3179519_0...done Loading CUFF.1513_From_ws_0_3381290_0...done Loading CUFF.915_From_can_0_3231205_0...done Loading CUFF.1383_From_tsu_0_3242833_1...done Loading CUFF.1415_From_wil_2_3082811_1...done Loading CUFF.1421_From_tsu_0_3215821_0...done Loading CUFF.919_From_can_0_3258779_0...done Loading CUFF.909_From_can_0_3223655_0...done Loading CUFF.1029_From_kn_0_3802200_0...done Loading CUFF.1393_From_tsu_0_3228555_0...done Loading CUFF.1437_From_wil_2_3088151_0...done Loading CUFF.1377_From_tsu_0_3215671_0...done Loading CUFF.1633_From_zu_0_3280213_0...done Loading CUFF.1333_From_sf_2_2666154_1...done Loading CUFF.1405_From_wil_2_3052951_0...done Loading CUFF.971_From_edi_0_2891226_0...done Loading CUFF.1623_From_zu_0_3289907_1...done Loading CUFF.1557_From_wu_0_2824308_0...done Loading CUFF.1015_From_hi_0_2966608_0...done Loading CUFF.951_From_ct_1_3280175_0...done Loading CUFF.1159_From_no_0_3088052_0...done Loading CUFF.1621_From_zu_0_3275363_0...done Loading CUFF.871_From_bur_0_2012810_0...done Loading CUFF.889_From_bur_0_2032354_0...done Loading CUFF.1647_From_zu_0_3289907_1...done Loading CUFF.1289_From_po_0_3606391_0...done Loading CUFF.1053_From_kn_0_3819922_1...done Loading CUFF.877_From_bur_0_2022518_0...done Loading CUFF.1371_From_tsu_0_3211333_0...done Loading CUFF.1279_From_po_0_3599571_0...done Loading CUFF.1577_From_wu_0_2832848_0...done Loading CUFF.1033_From_kn_0_3799876_0...done Loading CUFF.1561_From_wu_0_2827904_0...done Loading CUFF.1041_From_kn_0_3824150_0...done Loading CUFF.1369_From_sf_2_2700286_0...done Loading CUFF.1627_From_zu_0_3262887_0...done Loading CUFF.899_From_bur_0_2022518_0...done Loading CUFF.941_From_bur_0_2025286_0...done Loading CUFF.1585_From_wu_0_2837848_0...done Loading CUFF.1269_From_po_0_3606391_1...done Loading CUFF.1381_From_tsu_0_3240885_0...done Loading CUFF.1181_From_no_0_3120392_0...done Loading CUFF.1501_From_ws_0_3365892_0...done Loading CUFF.1425_From_wil_2_3091415_1...done Loading CUFF.1537_From_ws_0_3382500_0...done Loading CUFF.873_From_bur_0_2020452_0...done Loading CUFF.1277_From_po_0_3599571_0...done Loading CUFF.1447_From_wil_2_3091415_1...done Loading CUFF.897_From_bur_0_2022518_0...done Loading CUFF.997_From_edi_0_2934714_0...done Loading CUFF.977_From_edi_0_2934714_0...done Loading CUFF.979_From_edi_0_2934714_0...done Loading CUFF.1485_From_ws_0_3371988_0...done Loading left segment hits... Microaligned 2464 segments done. Found 267 potential split-segment junctions Found 15 potential small deletions Found 14 potential small insertions Indexing extensions in ./can_0.TOnovel/tmp/left_kept_reads_seg1_missing.fq Indexing extensions in ./can_0.TOnovel/tmp/left_kept_reads_seg2_missing.fq Indexing extensions in ./can_0.TOnovel/tmp/left_kept_reads_seg3_missing.fq Total extensions: 40180501 Total extensions: 40180501 Total extensions: 40180501 Looking for junctions by island end pairings Adding hits from segment file 0 to coverage map Adding hits from segment file 1 to coverage map Adding hits from segment file 2 to coverage map Map covers 29053 bases Map covers 28738 bases in sufficiently long segments Map contains 310 good islands 9868 are left looking bases 7778 are right looking bases Collecting potential splice sites in islands reporting synthetic splice junctions... Examining donor-acceptor pairings in CUFF.951_From_ct_1_3280175_0 Examining donor-acceptor pairings in CUFF.1471_From_tsu_0_3212935_0 Examining donor-acceptor pairings in CUFF.1561_From_wu_0_2827904_0 Examining donor-acceptor pairings in CUFF.1605_From_zu_0_3257369_0 Examining donor-acceptor pairings in CUFF.1463_From_ws_0_3190679_0 Examining donor-acceptor pairings in CUFF.913_From_can_0_3217045_0 Examining donor-acceptor pairings in CUFF.1329_From_sf_2_2642906_0 Examining donor-acceptor pairings in CUFF.1467_From_ws_0_3309675_0 Examining donor-acceptor pairings in CUFF.961_From_ct_1_3302721_0 Examining donor-acceptor pairings in CUFF.1459_From_ws_0_3182508_0 Examining donor-acceptor pairings in CUFF.1597_From_zu_0_3181459_0 Examining donor-acceptor pairings in CUFF.1499_From_ws_0_3382714_0 Examining donor-acceptor pairings in CUFF.1531_From_ws_0_3340488_0 Examining donor-acceptor pairings in CUFF.1609_From_zu_0_3260873_0 Examining donor-acceptor pairings in CUFF.1577_From_wu_0_2832848_0 Examining donor-acceptor pairings in CUFF.1621_From_zu_0_3275363_0 Examining donor-acceptor pairings in CUFF.1611_From_zu_0_3255503_0 Examining donor-acceptor pairings in CUFF.1631_From_zu_0_3277661_1 Examining donor-acceptor pairings in CUFF.949_From_can_0_3218459_0 Examining donor-acceptor pairings in CUFF.1513_From_ws_0_3381290_0 Examining donor-acceptor pairings in CUFF.1305_From_rsch_4_4263688_0 Examining donor-acceptor pairings in CUFF.1073_From_ler_0_4209589_1 Examining donor-acceptor pairings in CUFF.1265_From_po_0_3577252_0 Examining donor-acceptor pairings in CUFF.1637_From_zu_0_3277661_0 Examining donor-acceptor pairings in CUFF.1117_From_hi_0_2939638_0 Examining donor-acceptor pairings in CUFF.1215_From_oy_0_3162092_0 Examining donor-acceptor pairings in CUFF.911_From_can_0_3230893_0 Examining donor-acceptor pairings in CUFF.1177_From_no_0_3116640_0 Examining donor-acceptor pairings in CUFF.1007_From_edi_0_2888586_0 Examining donor-acceptor pairings in CUFF.869_From_bur_0_1873494_0 Examining donor-acceptor pairings in CUFF.1101_From_mt_0_4188374_0 Examining donor-acceptor pairings in CUFF.937_From_can_0_3239881_0 Examining donor-acceptor pairings in CUFF.1197_From_oy_0_3103794_0 Examining donor-acceptor pairings in CUFF.921_From_can_0_3233581_0 Examining donor-acceptor pairings in CUFF.909_From_can_0_3223655_0 Examining donor-acceptor pairings in CUFF.1615_From_zu_0_3118546_0 Examining donor-acceptor pairings in CUFF.955_From_edi_0_2766531_0 Examining donor-acceptor pairings in CUFF.1259_From_po_0_3402348_0 Examining donor-acceptor pairings in CUFF.1583_From_wu_0_2829124_0 Examining donor-acceptor pairings in CUFF.1175_From_hi_0_2953648_0 Examining donor-acceptor pairings in CUFF.1359_From_tsu_0_3148935_0 Examining donor-acceptor pairings in CUFF.1019_From_edi_0_2859720_0 Examining donor-acceptor pairings in CUFF.983_From_ct_1_3241157_0 Examining donor-acceptor pairings in CUFF.971_From_edi_0_2891226_0 Examining donor-acceptor pairings in CUFF.1361_From_tsu_0_3175121_0 Examining donor-acceptor pairings in CUFF.1251_From_po_0_3400198_0 Examining donor-acceptor pairings in CUFF.881_From_bur_0_1969548_0 Examining donor-acceptor pairings in CUFF.1483_From_ws_0_3364198_0 Examining donor-acceptor pairings in CUFF.1639_From_zu_0_3291057_0 Examining donor-acceptor pairings in CUFF.929_From_can_0_3263637_0 Examining donor-acceptor pairings in CUFF.919_From_can_0_3258779_0 Examining donor-acceptor pairings in CUFF.1061_From_ler_0_4016532_0 Examining donor-acceptor pairings in CUFF.1641_From_zu_0_3291057_0 Examining donor-acceptor pairings in CUFF.1325_From_sf_2_2626132_0 Examining donor-acceptor pairings in CUFF.1003_From_hi_0_2790034_0 Examining donor-acceptor pairings in CUFF.1349_From_mt_0_4528444_1 Examining donor-acceptor pairings in CUFF.1547_From_wu_0_2685428_0 Examining donor-acceptor pairings in CUFF.897_From_bur_0_2022518_0 Examining donor-acceptor pairings in CUFF.1479_From_ws_0_3339092_0 Examining donor-acceptor pairings in CUFF.1601_From_zu_0_3250197_1 Examining donor-acceptor pairings in CUFF.1281_From_oy_0_3121110_0 Examining donor-acceptor pairings in CUFF.1165_From_no_0_2959683_0 Examining donor-acceptor pairings in CUFF.871_From_bur_0_2012810_0 Examining donor-acceptor pairings in CUFF.1453_From_ws_0_3185408_0 Examining donor-acceptor pairings in CUFF.1041_From_kn_0_3824150_0 Examining donor-acceptor pairings in CUFF.1309_From_rsch_4_4307314_0 Examining donor-acceptor pairings in CUFF.941_From_bur_0_2025286_0 Examining donor-acceptor pairings in CUFF.1635_From_zu_0_3263539_0 Examining donor-acceptor pairings in CUFF.1295_From_rsch_4_4118037_0 Examining donor-acceptor pairings in CUFF.1443_From_wil_2_3052273_0 Examining donor-acceptor pairings in CUFF.973_From_edi_0_2871668_0 Examining donor-acceptor pairings in CUFF.1301_From_rsch_4_4111713_0 Examining donor-acceptor pairings in CUFF.943_From_ct_1_3247037_0 Examining donor-acceptor pairings in CUFF.1491_From_ws_0_3373966_0 Examining donor-acceptor pairings in CUFF.1599_From_zu_0_3200689_0 Examining donor-acceptor pairings in CUFF.969_From_edi_0_2888616_0 Examining donor-acceptor pairings in CUFF.1619_From_zu_0_3280025_0 Examining donor-acceptor pairings in CUFF.1397_From_tsu_0_3228017_0 Examining donor-acceptor pairings in CUFF.967_From_edi_0_2887084_2 Examining donor-acceptor pairings in CUFF.1473_From_ws_0_3293243_0 Examining donor-acceptor pairings in CUFF.1353_From_tsu_0_3002533_0 Examining donor-acceptor pairings in CUFF.1417_From_wil_2_3078633_1 Examining donor-acceptor pairings in CUFF.1333_From_sf_2_2666154_1 Examining donor-acceptor pairings in CUFF.1585_From_wu_0_2837848_0 Examining donor-acceptor pairings in CUFF.1053_From_kn_0_3819922_1 Examining donor-acceptor pairings in CUFF.1423_From_wil_2_3072219_0 Examining donor-acceptor pairings in CUFF.963_From_edi_0_2744702_0 Examining donor-acceptor pairings in CUFF.1431_From_ws_0_3170660_0 Examining donor-acceptor pairings in CUFF.1421_From_tsu_0_3215821_0 Examining donor-acceptor pairings in CUFF.1401_From_wil_2_3050523_0 Examining donor-acceptor pairings in CUFF.1347_From_sf_2_2682779_0 Examining donor-acceptor pairings in CUFF.877_From_bur_0_2022518_0 Examining donor-acceptor pairings in CUFF.1563_From_ws_0_3381390_0 Examining donor-acceptor pairings in CUFF.1475_From_ws_0_3313321_0 Examining donor-acceptor pairings in CUFF.1593_From_zu_0_3112556_0 Examining donor-acceptor pairings in CUFF.1267_From_no_0_3128142_0 Examining donor-acceptor pairings in CUFF.1603_From_zu_0_3242889_0 Examining donor-acceptor pairings in CUFF.1493_From_wil_2_3087183_0 Examining donor-acceptor pairings in CUFF.985_From_edi_0_2921730_0 Examining donor-acceptor pairings in CUFF.915_From_can_0_3231205_0 Examining donor-acceptor pairings in CUFF.1139_From_ler_0_4211779_1 Examining donor-acceptor pairings in CUFF.1087_From_ler_0_4211779_0 Examining donor-acceptor pairings in CUFF.1607_From_zu_0_3255169_0 Found 28 potential island-end pairing junctions done Aligning 2464 microexon segments in 248 windows window 100 window 200 Checked 4928 segments against 248 windows for microexon junctions Found 4 potential microexon junctions -- microexon -- CUFF.949_From_can_0_3218459_0 88 169 + CUFF.949_From_can_0_3218459_0 655 791 + CUFF.937_From_can_0_3239881_0 311 745 - CUFF.881_From_bur_0_1969548_0 66 618 + -- done -- -- seg -- CUFF.1471_From_tsu_0_3212935_0 575 631 + CUFF.1471_From_tsu_0_3212935_0 581 636 + CUFF.1471_From_tsu_0_3212935_0 587 642 + CUFF.1471_From_tsu_0_3212935_0 589 642 + CUFF.1471_From_tsu_0_3212935_0 592 650 + CUFF.1471_From_tsu_0_3212935_0 597 651 - CUFF.1621_From_zu_0_3275363_0 368 465 - CUFF.1621_From_zu_0_3275363_0 368 473 - CUFF.1621_From_zu_0_3275363_0 378 473 + CUFF.1621_From_zu_0_3275363_0 380 464 + CUFF.1621_From_zu_0_3275363_0 384 473 + CUFF.1621_From_zu_0_3275363_0 387 465 - CUFF.1621_From_zu_0_3275363_0 387 473 - CUFF.1621_From_zu_0_3275363_0 390 464 + CUFF.1621_From_zu_0_3275363_0 390 470 - CUFF.1621_From_zu_0_3275363_0 393 464 + CUFF.1621_From_zu_0_3275363_0 394 465 - CUFF.1621_From_zu_0_3275363_0 394 473 - CUFF.949_From_can_0_3218459_0 641 771 - CUFF.949_From_can_0_3218459_0 641 791 + CUFF.949_From_can_0_3218459_0 651 791 + CUFF.949_From_can_0_3218459_0 655 771 - CUFF.949_From_can_0_3218459_0 655 791 + CUFF.949_From_can_0_3218459_0 659 771 - CUFF.949_From_can_0_3218459_0 659 791 + CUFF.949_From_can_0_3218459_0 674 767 - CUFF.949_From_can_0_3218459_0 674 791 + CUFF.949_From_can_0_3218459_0 677 767 - CUFF.949_From_can_0_3218459_0 677 791 + CUFF.949_From_can_0_3218459_0 679 791 + CUFF.949_From_can_0_3218459_0 680 773 - CUFF.949_From_can_0_3218459_0 682 767 - CUFF.949_From_can_0_3218459_0 682 791 + CUFF.949_From_can_0_3218459_0 687 767 - CUFF.949_From_can_0_3218459_0 687 791 + CUFF.1007_From_edi_0_2888586_0 349 425 + CUFF.1007_From_edi_0_2888586_0 351 421 - CUFF.1007_From_edi_0_2888586_0 351 425 - CUFF.1007_From_edi_0_2888586_0 359 421 - CUFF.1007_From_edi_0_2888586_0 359 425 - CUFF.1007_From_edi_0_2888586_0 365 425 + CUFF.1007_From_edi_0_2888586_0 367 421 - CUFF.1007_From_edi_0_2888586_0 367 425 - CUFF.1007_From_edi_0_2888586_0 369 425 - CUFF.1007_From_edi_0_2888586_0 369 446 - CUFF.1007_From_edi_0_2888586_0 375 436 + CUFF.1007_From_edi_0_2888586_0 386 442 - CUFF.1007_From_edi_0_2888586_0 386 446 - CUFF.881_From_bur_0_1969548_0 49 130 + CUFF.881_From_bur_0_1969548_0 52 130 + CUFF.881_From_bur_0_1969548_0 58 130 + CUFF.881_From_bur_0_1969548_0 60 130 - CUFF.881_From_bur_0_1969548_0 60 135 - CUFF.881_From_bur_0_1969548_0 62 130 + CUFF.881_From_bur_0_1969548_0 66 122 + CUFF.881_From_bur_0_1969548_0 66 134 + CUFF.881_From_bur_0_1969548_0 66 141 - CUFF.881_From_bur_0_1969548_0 73 130 + CUFF.881_From_bur_0_1969548_0 75 130 + CUFF.881_From_bur_0_1969548_0 78 145 + CUFF.881_From_bur_0_1969548_0 82 147 + CUFF.881_From_bur_0_1969548_0 83 145 - CUFF.881_From_bur_0_1969548_0 89 147 + CUFF.881_From_bur_0_1969548_0 93 150 + CUFF.1641_From_zu_0_3291057_0 150 241 + CUFF.1641_From_zu_0_3291057_0 154 225 - CUFF.1641_From_zu_0_3291057_0 154 241 - CUFF.1641_From_zu_0_3291057_0 157 241 + CUFF.1641_From_zu_0_3291057_0 165 219 + CUFF.1641_From_zu_0_3291057_0 171 224 + CUFF.1641_From_zu_0_3291057_0 174 241 + CUFF.1641_From_zu_0_3291057_0 180 241 + CUFF.1635_From_zu_0_3263539_0 209 1070 - CUFF.1635_From_zu_0_3263539_0 220 1054 - CUFF.1635_From_zu_0_3263539_0 220 1062 + CUFF.1635_From_zu_0_3263539_0 223 1054 - CUFF.1635_From_zu_0_3263539_0 223 1062 + CUFF.1635_From_zu_0_3263539_0 231 1070 + CUFF.1635_From_zu_0_3263539_0 235 1062 + CUFF.1421_From_tsu_0_3215821_0 501 616 + CUFF.1421_From_tsu_0_3215821_0 504 642 + CUFF.1421_From_tsu_0_3215821_0 505 616 - CUFF.1421_From_tsu_0_3215821_0 507 642 + CUFF.1421_From_tsu_0_3215821_0 511 616 - CUFF.1421_From_tsu_0_3215821_0 513 642 + CUFF.1421_From_tsu_0_3215821_0 513 644 - CUFF.1421_From_tsu_0_3215821_0 515 642 + CUFF.1421_From_tsu_0_3215821_0 515 644 - CUFF.1421_From_tsu_0_3215821_0 521 616 - CUFF.1421_From_tsu_0_3215821_0 523 616 - CUFF.1421_From_tsu_0_3215821_0 527 642 + CUFF.1421_From_tsu_0_3215821_0 529 616 + CUFF.1607_From_zu_0_3255169_0 630 839 + CUFF.1607_From_zu_0_3255169_0 634 839 + CUFF.1607_From_zu_0_3255169_0 634 861 - CUFF.1607_From_zu_0_3255169_0 638 840 - CUFF.1607_From_zu_0_3255169_0 638 845 - CUFF.1607_From_zu_0_3255169_0 638 851 - CUFF.1607_From_zu_0_3255169_0 643 845 + CUFF.1607_From_zu_0_3255169_0 645 840 - CUFF.1607_From_zu_0_3255169_0 645 845 - CUFF.1607_From_zu_0_3255169_0 645 851 - CUFF.1607_From_zu_0_3255169_0 645 863 - CUFF.1607_From_zu_0_3255169_0 645 872 - CUFF.1607_From_zu_0_3255169_0 648 840 - CUFF.1607_From_zu_0_3255169_0 648 845 - CUFF.1607_From_zu_0_3255169_0 648 851 - CUFF.1607_From_zu_0_3255169_0 648 863 - CUFF.1607_From_zu_0_3255169_0 648 872 - CUFF.1607_From_zu_0_3255169_0 652 840 - CUFF.1607_From_zu_0_3255169_0 652 845 - CUFF.1607_From_zu_0_3255169_0 652 851 - CUFF.1607_From_zu_0_3255169_0 652 863 - CUFF.1607_From_zu_0_3255169_0 652 872 - CUFF.1607_From_zu_0_3255169_0 656 839 + CUFF.1607_From_zu_0_3255169_0 656 859 + CUFF.1607_From_zu_0_3255169_0 657 840 - CUFF.1607_From_zu_0_3255169_0 657 845 - CUFF.1607_From_zu_0_3255169_0 657 851 - CUFF.1607_From_zu_0_3255169_0 657 863 - CUFF.1607_From_zu_0_3255169_0 657 872 - CUFF.1607_From_zu_0_3255169_0 661 845 + CUFF.1607_From_zu_0_3255169_0 661 872 + CUFF.1607_From_zu_0_3255169_0 664 845 + CUFF.1607_From_zu_0_3255169_0 664 872 + CUFF.1607_From_zu_0_3255169_0 671 859 + CUFF.1607_From_zu_0_3255169_0 674 859 + CUFF.1471_From_tsu_0_3212935_0 575 636 + CUFF.1471_From_tsu_0_3212935_0 581 642 + CUFF.1471_From_tsu_0_3212935_0 587 650 + CUFF.1471_From_tsu_0_3212935_0 589 650 + CUFF.1471_From_tsu_0_3212935_0 592 658 + CUFF.1471_From_tsu_0_3212935_0 597 656 - CUFF.1621_From_zu_0_3275363_0 368 480 - CUFF.1621_From_zu_0_3275363_0 378 480 + CUFF.1621_From_zu_0_3275363_0 380 487 + CUFF.1621_From_zu_0_3275363_0 384 480 + CUFF.1621_From_zu_0_3275363_0 387 480 - CUFF.1621_From_zu_0_3275363_0 390 475 - CUFF.1621_From_zu_0_3275363_0 390 487 + CUFF.1621_From_zu_0_3275363_0 393 487 + CUFF.1621_From_zu_0_3275363_0 394 480 - CUFF.949_From_can_0_3218459_0 641 775 - CUFF.949_From_can_0_3218459_0 641 802 + CUFF.949_From_can_0_3218459_0 651 802 + CUFF.949_From_can_0_3218459_0 655 775 - CUFF.949_From_can_0_3218459_0 655 802 + CUFF.949_From_can_0_3218459_0 659 775 - CUFF.949_From_can_0_3218459_0 659 802 + CUFF.949_From_can_0_3218459_0 674 769 - CUFF.949_From_can_0_3218459_0 677 769 - CUFF.949_From_can_0_3218459_0 682 769 - CUFF.949_From_can_0_3218459_0 687 769 - CUFF.1007_From_edi_0_2888586_0 359 436 - CUFF.1007_From_edi_0_2888586_0 359 446 - CUFF.1007_From_edi_0_2888586_0 365 436 + CUFF.1007_From_edi_0_2888586_0 367 436 - CUFF.1007_From_edi_0_2888586_0 367 446 - CUFF.1007_From_edi_0_2888586_0 369 436 - CUFF.1007_From_edi_0_2888586_0 375 442 + CUFF.881_From_bur_0_1969548_0 52 145 + CUFF.881_From_bur_0_1969548_0 58 145 + CUFF.881_From_bur_0_1969548_0 60 145 - CUFF.881_From_bur_0_1969548_0 62 145 + CUFF.881_From_bur_0_1969548_0 66 126 + CUFF.881_From_bur_0_1969548_0 66 147 + CUFF.881_From_bur_0_1969548_0 73 145 + CUFF.881_From_bur_0_1969548_0 75 145 + CUFF.881_From_bur_0_1969548_0 78 150 + CUFF.881_From_bur_0_1969548_0 82 157 + CUFF.881_From_bur_0_1969548_0 83 150 - CUFF.881_From_bur_0_1969548_0 89 157 + CUFF.1641_From_zu_0_3291057_0 154 230 - CUFF.1641_From_zu_0_3291057_0 165 224 + CUFF.1641_From_zu_0_3291057_0 171 227 + CUFF.1635_From_zu_0_3263539_0 220 1065 - CUFF.1635_From_zu_0_3263539_0 223 1065 - CUFF.1421_From_tsu_0_3215821_0 501 620 + CUFF.1421_From_tsu_0_3215821_0 505 620 - CUFF.1421_From_tsu_0_3215821_0 511 620 - CUFF.1421_From_tsu_0_3215821_0 521 620 - CUFF.1421_From_tsu_0_3215821_0 523 620 - CUFF.1421_From_tsu_0_3215821_0 529 620 + CUFF.1607_From_zu_0_3255169_0 630 859 + CUFF.1607_From_zu_0_3255169_0 634 859 + CUFF.1607_From_zu_0_3255169_0 638 851 - CUFF.1607_From_zu_0_3255169_0 638 863 - CUFF.1607_From_zu_0_3255169_0 638 872 - CUFF.1607_From_zu_0_3255169_0 643 872 + CUFF.1607_From_zu_0_3255169_0 645 851 - CUFF.1607_From_zu_0_3255169_0 645 863 - CUFF.1607_From_zu_0_3255169_0 645 872 - CUFF.1607_From_zu_0_3255169_0 645 876 - CUFF.1607_From_zu_0_3255169_0 648 851 - CUFF.1607_From_zu_0_3255169_0 648 863 - CUFF.1607_From_zu_0_3255169_0 648 872 - CUFF.1607_From_zu_0_3255169_0 648 876 - CUFF.1607_From_zu_0_3255169_0 652 851 - CUFF.1607_From_zu_0_3255169_0 652 863 - CUFF.1607_From_zu_0_3255169_0 652 872 - CUFF.1607_From_zu_0_3255169_0 652 876 - CUFF.1607_From_zu_0_3255169_0 656 859 + CUFF.1607_From_zu_0_3255169_0 657 851 - CUFF.1607_From_zu_0_3255169_0 657 863 - CUFF.1607_From_zu_0_3255169_0 657 872 - CUFF.1607_From_zu_0_3255169_0 657 876 - CUFF.1607_From_zu_0_3255169_0 661 872 + CUFF.1607_From_zu_0_3255169_0 664 872 + CUFF.1471_From_tsu_0_3212935_0 575 642 + CUFF.1471_From_tsu_0_3212935_0 581 650 + CUFF.1471_From_tsu_0_3212935_0 587 658 + CUFF.1471_From_tsu_0_3212935_0 589 658 + CUFF.1621_From_zu_0_3275363_0 368 489 - CUFF.1621_From_zu_0_3275363_0 378 489 + CUFF.1621_From_zu_0_3275363_0 384 489 + CUFF.1621_From_zu_0_3275363_0 387 489 - CUFF.1621_From_zu_0_3275363_0 390 484 - CUFF.1621_From_zu_0_3275363_0 394 489 - CUFF.949_From_can_0_3218459_0 641 780 - CUFF.949_From_can_0_3218459_0 655 780 - CUFF.949_From_can_0_3218459_0 659 780 - CUFF.949_From_can_0_3218459_0 674 771 - CUFF.949_From_can_0_3218459_0 677 771 - CUFF.949_From_can_0_3218459_0 682 771 - CUFF.949_From_can_0_3218459_0 687 771 - CUFF.1007_From_edi_0_2888586_0 359 442 - CUFF.1007_From_edi_0_2888586_0 365 442 + CUFF.1007_From_edi_0_2888586_0 367 442 - CUFF.1007_From_edi_0_2888586_0 369 442 - CUFF.881_From_bur_0_1969548_0 62 150 + CUFF.881_From_bur_0_1969548_0 66 128 + CUFF.881_From_bur_0_1969548_0 66 157 + CUFF.881_From_bur_0_1969548_0 73 150 + CUFF.881_From_bur_0_1969548_0 75 150 + CUFF.1641_From_zu_0_3291057_0 154 234 - CUFF.1641_From_zu_0_3291057_0 165 227 + CUFF.1641_From_zu_0_3291057_0 171 229 + CUFF.1635_From_zu_0_3263539_0 220 1068 - CUFF.1635_From_zu_0_3263539_0 223 1068 - CUFF.1421_From_tsu_0_3215821_0 501 637 + CUFF.1421_From_tsu_0_3215821_0 505 637 - CUFF.1421_From_tsu_0_3215821_0 511 637 - CUFF.1421_From_tsu_0_3215821_0 521 637 - CUFF.1421_From_tsu_0_3215821_0 523 637 - CUFF.1421_From_tsu_0_3215821_0 529 637 + CUFF.1607_From_zu_0_3255169_0 638 863 - CUFF.1607_From_zu_0_3255169_0 645 863 - CUFF.1607_From_zu_0_3255169_0 648 863 - CUFF.1607_From_zu_0_3255169_0 652 863 - CUFF.1607_From_zu_0_3255169_0 657 863 - CUFF.1471_From_tsu_0_3212935_0 575 650 + CUFF.1471_From_tsu_0_3212935_0 581 658 + CUFF.949_From_can_0_3218459_0 674 775 - CUFF.949_From_can_0_3218459_0 677 775 - CUFF.949_From_can_0_3218459_0 682 775 - CUFF.949_From_can_0_3218459_0 687 775 - CUFF.881_From_bur_0_1969548_0 66 134 + CUFF.1641_From_zu_0_3291057_0 154 236 - CUFF.1641_From_zu_0_3291057_0 165 229 + CUFF.1635_From_zu_0_3263539_0 220 1078 - CUFF.1635_From_zu_0_3263539_0 223 1078 - CUFF.1471_From_tsu_0_3212935_0 575 658 + CUFF.949_From_can_0_3218459_0 674 780 - CUFF.949_From_can_0_3218459_0 677 780 - CUFF.949_From_can_0_3218459_0 682 780 - CUFF.949_From_can_0_3218459_0 687 780 - CUFF.881_From_bur_0_1969548_0 66 147 + -- done -- -- cov -- CUFF.949_From_can_0_3218459_0 88 169 + CUFF.1053_From_kn_0_3819922_1 29 102 + CUFF.1053_From_kn_0_3819922_1 31 102 + CUFF.1053_From_kn_0_3819922_1 29 1248 + CUFF.1053_From_kn_0_3819922_1 31 1248 + CUFF.1421_From_tsu_0_3215821_0 505 620 - CUFF.1421_From_tsu_0_3215821_0 511 620 - CUFF.1267_From_no_0_3128142_0 518 1330 + CUFF.949_From_can_0_3218459_0 677 791 + CUFF.1053_From_kn_0_3819922_1 29 1252 + CUFF.1053_From_kn_0_3819922_1 31 1252 + CUFF.1053_From_kn_0_3819922_1 29 1255 + CUFF.1053_From_kn_0_3819922_1 31 1255 + CUFF.1053_From_kn_0_3819922_1 29 1261 + CUFF.1053_From_kn_0_3819922_1 31 1261 + CUFF.941_From_bur_0_2025286_0 400 2217 - CUFF.1053_From_kn_0_3819922_1 29 1268 + CUFF.1053_From_kn_0_3819922_1 31 1268 + CUFF.1053_From_kn_0_3819922_1 29 1280 + CUFF.1053_From_kn_0_3819922_1 31 1280 + CUFF.1053_From_kn_0_3819922_1 29 1712 + CUFF.1053_From_kn_0_3819922_1 31 1712 + CUFF.1053_From_kn_0_3819922_1 29 1717 + CUFF.1053_From_kn_0_3819922_1 31 1717 + CUFF.1053_From_kn_0_3819922_1 29 1744 + CUFF.1053_From_kn_0_3819922_1 31 1744 + CUFF.1563_From_ws_0_3381390_0 308 655 + CUFF.941_From_bur_0_2025286_0 90 2242 - -- done -- -- buf -- -- done -- Reporting potential splice junctions...done Reported 271 total possible splices Reporting potential deletions... Reporting potential insertions...