segment_juncs v1.2.0 (1752) --------------------------- Loading reference sequences... Loading CUFF.1649_From_zu_0_3082201_0...done Loading CUFF.1231_From_oy_0_2965192_0...done Loading CUFF.1337_From_sf_2_2662232_0...done Loading CUFF.1509_From_wu_0_2616263_0...done Loading CUFF.1149_From_mt_0_4217716_0...done Loading CUFF.1275_From_po_0_3332479_0...done Loading CUFF.1615_From_zu_0_3118546_0...done Loading CUFF.1211_From_po_0_3269389_0...done Loading CUFF.1519_From_wu_0_2597064_0...done Loading CUFF.1335_From_sf_2_2524453_0...done Loading CUFF.1507_From_wu_0_2587993_0...done Loading CUFF.1155_From_no_0_2905273_0...done Loading CUFF.1271_From_rsch_4_4034850_0...done Loading CUFF.1209_From_po_0_3295404_0...done Loading CUFF.1523_From_wu_0_2638225_0...done Loading CUFF.867_From_bur_0_1863298_0...done Loading CUFF.1349_From_mt_0_4528444_1...done Loading CUFF.995_From_hi_0_2751582_0...done Loading CUFF.981_From_hi_0_2690171_0...done Loading CUFF.1027_From_kn_0_3558357_0...done Loading CUFF.963_From_edi_0_2744702_0...done Loading CUFF.1503_From_wu_0_2588697_0...done Loading CUFF.1093_From_mt_0_4130072_0...done Loading CUFF.1219_From_po_0_3319326_0...done Loading CUFF.1119_From_hi_0_2939638_0...done Loading CUFF.1019_From_edi_0_2859720_0...done Loading CUFF.1547_From_wu_0_2685428_0...done Loading CUFF.1353_From_tsu_0_3002533_0...done Loading CUFF.1569_From_zu_0_3035650_0...done Loading CUFF.1141_From_mt_0_4449890_0...done Loading CUFF.1529_From_wu_0_2655159_0...done Loading CUFF.1045_From_kn_0_3605300_0...done Loading CUFF.1531_From_ws_0_3340488_0...done Loading CUFF.1497_From_ws_0_3380934_0...done Loading CUFF.1575_From_wu_0_2831218_0...done Loading CUFF.1013_From_kn_0_3532396_0...done Loading CUFF.1095_From_mt_0_4131964_0...done Loading CUFF.1079_From_mt_0_4085357_0...done Loading CUFF.921_From_can_0_3233581_0...done Loading CUFF.869_From_bur_0_1873494_0...done Loading CUFF.1081_From_mt_0_4099484_0...done Loading CUFF.1505_From_wu_0_2607348_0...done Loading CUFF.1427_From_ws_0_3077529_0...done Loading CUFF.1515_From_wu_0_2648785_0...done Loading CUFF.1285_From_rsch_4_4085063_0...done Loading CUFF.1153_From_no_0_2923846_0...done Loading CUFF.1307_From_rsch_4_4277566_0...done Loading CUFF.1281_From_oy_0_3121110_0...done Loading CUFF.1301_From_rsch_4_4111713_0...done Loading CUFF.907_From_can_0_3122480_0...done Loading CUFF.1213_From_po_0_3316390_0...done Loading CUFF.1535_From_wu_0_2676799_0...done Loading CUFF.1003_From_hi_0_2790034_0...done Loading CUFF.1395_From_wil_2_2904915_0...done Loading CUFF.1631_From_zu_0_3277661_1...done Loading CUFF.1109_From_mt_0_4194856_0...done Loading CUFF.1207_From_po_0_3308932_0...done Loading CUFF.1397_From_tsu_0_3228017_0...done Loading CUFF.1459_From_ws_0_3182508_0...done Loading CUFF.1613_From_zu_0_3259399_1...done Loading CUFF.1008_From_kn_0_3525938_0...done Loading CUFF.1495_From_ws_0_3371988_0...done Loading CUFF.1017_From_kn_0_3566907_0...done Loading CUFF.1165_From_no_0_2959683_0...done Loading CUFF.1493_From_wil_2_3087183_0...done Loading CUFF.1573_From_zu_0_3065917_0...done Loading CUFF.1099_From_mt_0_4177596_0...done Loading CUFF.1253_From_po_0_3387411_0...done Loading CUFF.1293_From_rsch_4_4107621_0...done Loading CUFF.1591_From_zu_0_3092045_0...done Loading CUFF.1313_From_po_0_3573778_0...done Loading CUFF.1117_From_hi_0_2939638_0...done Loading CUFF.895_From_can_0_3069992_0...done Loading CUFF.1069_From_hi_0_2916184_0...done Loading CUFF.1637_From_zu_0_3277661_0...done Loading CUFF.1163_From_no_0_2951521_0...done Loading CUFF.1611_From_zu_0_3255503_0...done Loading CUFF.1367_From_tsu_0_3135135_0...done Loading CUFF.1453_From_ws_0_3185408_0...done Loading CUFF.1599_From_zu_0_3200689_0...done Loading CUFF.1315_From_rsch_4_4277566_0...done Loading CUFF.1229_From_po_0_3339041_0...done Loading CUFF.1385_From_sf_2_2653966_0...done Loading CUFF.1617_From_zu_0_3278243_0...done Loading CUFF.1521_From_ws_0_3344070_0...done Loading CUFF.1061_From_ler_0_4016532_0...done Loading CUFF.927_From_ct_1_3108889_0...done Loading CUFF.901_From_can_0_3094988_0...done Loading CUFF.1625_From_zu_0_3243571_0...done Loading CUFF.1481_From_ws_0_3349444_1...done Loading CUFF.1629_From_zu_0_3287917_0...done Loading CUFF.1139_From_ler_0_4211779_1...done Loading CUFF.1287_From_rsch_4_4099439_0...done Loading CUFF.1101_From_mt_0_4188374_0...done Loading CUFF.953_From_edi_0_2759591_0...done Loading CUFF.973_From_edi_0_2871668_0...done Loading CUFF.1597_From_zu_0_3181459_0...done Loading CUFF.1465_From_ws_0_3190963_0...done Loading CUFF.1233_From_po_0_3365309_0...done Loading CUFF.991_From_edi_0_2891968_0...done Loading CUFF.1603_From_zu_0_3242889_0...done Loading CUFF.937_From_can_0_3239881_0...done Loading CUFF.993_From_hi_0_2787534_0...done Loading CUFF.1049_From_ler_0_4002120_0...done Loading CUFF.929_From_can_0_3263637_0...done Loading CUFF.1157_From_no_0_2939843_0...done Loading CUFF.1055_From_ler_0_4004770_0...done Loading CUFF.1539_From_wu_0_2702886_0...done Loading CUFF.989_From_edi_0_2932438_0...done Loading CUFF.1011_From_edi_0_2918156_0...done Loading CUFF.1593_From_zu_0_3112556_0...done Loading CUFF.1113_From_mt_0_4206392_0...done Loading CUFF.1431_From_ws_0_3170660_0...done Loading CUFF.1443_From_wil_2_3052273_0...done Loading CUFF.1533_From_wu_0_2683442_0...done Loading CUFF.881_From_bur_0_1969548_0...done Loading CUFF.1401_From_wil_2_3050523_0...done Loading CUFF.1527_From_wu_0_2675967_0...done Loading CUFF.1259_From_po_0_3402348_0...done Loading CUFF.1379_From_sf_2_2656790_0...done Loading CUFF.955_From_edi_0_2766531_0...done Loading CUFF.1295_From_rsch_4_4118037_0...done Loading CUFF.1007_From_edi_0_2888586_0...done Loading CUFF.935_From_bur_0_2020452_0...done Loading CUFF.1491_From_ws_0_3373966_0...done Loading CUFF.1563_From_ws_0_3381390_0...done Loading CUFF.1133_From_mt_0_4399784_0...done Loading CUFF.1251_From_po_0_3400198_0...done Loading CUFF.1121_From_mt_0_4226690_0...done Loading CUFF.1411_From_rsch_4_4266550_0...done Loading CUFF.1489_From_ws_0_3372620_0...done Loading CUFF.1463_From_ws_0_3190679_0...done Loading CUFF.1087_From_ler_0_4211779_0...done Loading CUFF.1559_From_wu_0_2824162_0...done Loading CUFF.983_From_ct_1_3241157_0...done Loading CUFF.1175_From_hi_0_2953648_0...done Loading CUFF.967_From_edi_0_2887084_2...done Loading CUFF.1455_From_wil_2_3068737_0...done Loading CUFF.1645_From_wu_0_2816600_0...done Loading CUFF.1473_From_ws_0_3293243_0...done Loading CUFF.1399_From_wil_2_2978735_0...done Loading CUFF.969_From_edi_0_2888616_0...done Loading CUFF.1305_From_rsch_4_4263688_0...done Loading CUFF.1373_From_tsu_0_3208747_0...done Loading CUFF.985_From_edi_0_2921730_0...done Loading CUFF.913_From_can_0_3217045_0...done Loading CUFF.1433_From_wil_2_3079625_0...done Loading CUFF.961_From_ct_1_3302721_0...done Loading CUFF.1601_From_zu_0_3250197_1...done Loading CUFF.1173_From_no_0_3113578_1...done Loading CUFF.1187_From_oy_0_3098144_0...done Loading CUFF.1351_From_tsu_0_3175121_0...done Loading CUFF.1543_From_ws_0_3373604_0...done Loading CUFF.1409_From_wil_2_3066229_0...done Loading CUFF.911_From_can_0_3230893_0...done Loading CUFF.1639_From_zu_0_3291057_0...done Loading CUFF.1075_From_edi_0_2906444_0...done Loading CUFF.1471_From_tsu_0_3212935_0...done Loading CUFF.1413_From_sf_2_2687786_0...done Loading CUFF.1167_From_no_0_3096552_0...done Loading CUFF.875_From_bur_0_1999718_0...done Loading CUFF.1475_From_ws_0_3313321_0...done Loading CUFF.1483_From_ws_0_3364198_0...done Loading CUFF.1565_From_zu_0_3075813_0...done Loading CUFF.1363_From_sf_2_2671632_0...done Loading CUFF.1197_From_oy_0_3103794_0...done Loading CUFF.1311_From_rsch_4_4275442_0...done Loading CUFF.1343_From_sf_2_2689374_0...done Loading CUFF.1339_From_sf_2_2689374_0...done Loading CUFF.1359_From_tsu_0_3148935_0...done Loading CUFF.1223_From_po_0_3340213_0...done Loading CUFF.1329_From_sf_2_2642906_0...done Loading CUFF.1407_From_wil_2_3063473_0...done Loading CUFF.1641_From_zu_0_3291057_0...done Loading CUFF.1035_From_kn_0_3751597_0...done Loading CUFF.1169_From_no_0_3101262_0...done Loading CUFF.1423_From_wil_2_3072219_0...done Loading CUFF.1361_From_tsu_0_3175121_0...done Loading CUFF.1325_From_sf_2_2626132_0...done Loading CUFF.1261_From_po_0_3599571_0...done Loading CUFF.1375_From_tsu_0_3211741_0...done Loading CUFF.1417_From_wil_2_3078633_1...done Loading CUFF.1583_From_wu_0_2829124_0...done Loading CUFF.1267_From_no_0_3128142_0...done Loading CUFF.1309_From_rsch_4_4307314_0...done Loading CUFF.1499_From_ws_0_3382714_0...done Loading CUFF.1177_From_no_0_3116640_0...done Loading CUFF.1605_From_zu_0_3257369_0...done Loading CUFF.865_From_bur_0_1967596_0...done Loading CUFF.949_From_can_0_3218459_0...done Loading CUFF.1419_From_sf_2_2701328_0...done Loading CUFF.1345_From_sf_2_2689374_0...done Loading CUFF.1619_From_zu_0_3280025_0...done Loading CUFF.1065_From_ler_0_4153595_0...done Loading CUFF.1595_From_zu_0_3238769_0...done Loading CUFF.1111_From_ler_0_4165287_0...done Loading CUFF.1215_From_oy_0_3162092_0...done Loading CUFF.975_From_edi_0_2902016_0...done Loading CUFF.1545_From_wu_0_2770362_0...done Loading CUFF.1089_From_ler_0_4224097_0...done Loading CUFF.943_From_ct_1_3247037_0...done Loading CUFF.1077_From_ler_0_4225073_0...done Loading CUFF.1607_From_zu_0_3255169_0...done Loading CUFF.1487_From_ws_0_3347582_0...done Loading CUFF.1643_From_wu_0_2816600_0...done Loading CUFF.1609_From_zu_0_3260873_0...done Loading CUFF.1189_From_oy_0_3115434_0...done Loading CUFF.1467_From_ws_0_3309675_0...done Loading CUFF.1553_From_wu_0_2806776_0...done Loading CUFF.1439_From_wil_2_3089541_0...done Loading CUFF.879_From_bur_0_2021834_0...done Loading CUFF.1265_From_po_0_3577252_0...done Loading CUFF.1073_From_ler_0_4209589_1...done Loading CUFF.1479_From_ws_0_3339092_0...done Loading CUFF.1451_From_wil_2_3077447_0...done Loading CUFF.1347_From_sf_2_2682779_0...done Loading CUFF.1635_From_zu_0_3263539_0...done Loading CUFF.1579_From_wu_0_2802868_0...done Loading CUFF.1365_From_tsu_0_3179519_0...done Loading CUFF.1513_From_ws_0_3381290_0...done Loading CUFF.915_From_can_0_3231205_0...done Loading CUFF.1383_From_tsu_0_3242833_1...done Loading CUFF.1415_From_wil_2_3082811_1...done Loading CUFF.1421_From_tsu_0_3215821_0...done Loading CUFF.919_From_can_0_3258779_0...done Loading CUFF.909_From_can_0_3223655_0...done Loading CUFF.1029_From_kn_0_3802200_0...done Loading CUFF.1393_From_tsu_0_3228555_0...done Loading CUFF.1437_From_wil_2_3088151_0...done Loading CUFF.1377_From_tsu_0_3215671_0...done Loading CUFF.1633_From_zu_0_3280213_0...done Loading CUFF.1333_From_sf_2_2666154_1...done Loading CUFF.1405_From_wil_2_3052951_0...done Loading CUFF.971_From_edi_0_2891226_0...done Loading CUFF.1623_From_zu_0_3289907_1...done Loading CUFF.1557_From_wu_0_2824308_0...done Loading CUFF.1015_From_hi_0_2966608_0...done Loading CUFF.951_From_ct_1_3280175_0...done Loading CUFF.1159_From_no_0_3088052_0...done Loading CUFF.1621_From_zu_0_3275363_0...done Loading CUFF.871_From_bur_0_2012810_0...done Loading CUFF.889_From_bur_0_2032354_0...done Loading CUFF.1647_From_zu_0_3289907_1...done Loading CUFF.1289_From_po_0_3606391_0...done Loading CUFF.1053_From_kn_0_3819922_1...done Loading CUFF.877_From_bur_0_2022518_0...done Loading CUFF.1371_From_tsu_0_3211333_0...done Loading CUFF.1279_From_po_0_3599571_0...done Loading CUFF.1577_From_wu_0_2832848_0...done Loading CUFF.1033_From_kn_0_3799876_0...done Loading CUFF.1561_From_wu_0_2827904_0...done Loading CUFF.1041_From_kn_0_3824150_0...done Loading CUFF.1369_From_sf_2_2700286_0...done Loading CUFF.1627_From_zu_0_3262887_0...done Loading CUFF.899_From_bur_0_2022518_0...done Loading CUFF.941_From_bur_0_2025286_0...done Loading CUFF.1585_From_wu_0_2837848_0...done Loading CUFF.1269_From_po_0_3606391_1...done Loading CUFF.1381_From_tsu_0_3240885_0...done Loading CUFF.1181_From_no_0_3120392_0...done Loading CUFF.1501_From_ws_0_3365892_0...done Loading CUFF.1425_From_wil_2_3091415_1...done Loading CUFF.1537_From_ws_0_3382500_0...done Loading CUFF.873_From_bur_0_2020452_0...done Loading CUFF.1277_From_po_0_3599571_0...done Loading CUFF.1447_From_wil_2_3091415_1...done Loading CUFF.897_From_bur_0_2022518_0...done Loading CUFF.997_From_edi_0_2934714_0...done Loading CUFF.977_From_edi_0_2934714_0...done Loading CUFF.979_From_edi_0_2934714_0...done Loading CUFF.1485_From_ws_0_3371988_0...done Loading left segment hits... Microaligned 782 segments done. Found 235 potential split-segment junctions Found 13 potential small deletions Found 8 potential small insertions Indexing extensions in ./ct_1.TOnovel/tmp/left_kept_reads_seg1_missing.fq Indexing extensions in ./ct_1.TOnovel/tmp/left_kept_reads_seg2_missing.fq Indexing extensions in ./ct_1.TOnovel/tmp/left_kept_reads_seg3_missing.fq Total extensions: 46068000 Total extensions: 46068000 Total extensions: 46068000 Looking for junctions by island end pairings Adding hits from segment file 0 to coverage map Adding hits from segment file 1 to coverage map Adding hits from segment file 2 to coverage map Map covers 23282 bases Map covers 23012 bases in sufficiently long segments Map contains 267 good islands 8028 are left looking bases 6625 are right looking bases Collecting potential splice sites in islands reporting synthetic splice junctions... Examining donor-acceptor pairings in CUFF.951_From_ct_1_3280175_0 Examining donor-acceptor pairings in CUFF.1561_From_wu_0_2827904_0 Examining donor-acceptor pairings in CUFF.1329_From_sf_2_2642906_0 Examining donor-acceptor pairings in CUFF.1371_From_tsu_0_3211333_0 Examining donor-acceptor pairings in CUFF.927_From_ct_1_3108889_0 Examining donor-acceptor pairings in CUFF.1253_From_po_0_3387411_0 Examining donor-acceptor pairings in CUFF.1597_From_zu_0_3181459_0 Examining donor-acceptor pairings in CUFF.1485_From_ws_0_3371988_0 Examining donor-acceptor pairings in CUFF.1531_From_ws_0_3340488_0 Examining donor-acceptor pairings in CUFF.1407_From_wil_2_3063473_0 Examining donor-acceptor pairings in CUFF.1609_From_zu_0_3260873_0 Examining donor-acceptor pairings in CUFF.1577_From_wu_0_2832848_0 Examining donor-acceptor pairings in CUFF.1621_From_zu_0_3275363_0 Examining donor-acceptor pairings in CUFF.1075_From_edi_0_2906444_0 Examining donor-acceptor pairings in CUFF.949_From_can_0_3218459_0 Examining donor-acceptor pairings in CUFF.1513_From_ws_0_3381290_0 Examining donor-acceptor pairings in CUFF.1489_From_ws_0_3372620_0 Examining donor-acceptor pairings in CUFF.1643_From_wu_0_2816600_0 Examining donor-acceptor pairings in CUFF.1117_From_hi_0_2939638_0 Examining donor-acceptor pairings in CUFF.911_From_can_0_3230893_0 Examining donor-acceptor pairings in CUFF.1189_From_oy_0_3115434_0 Examining donor-acceptor pairings in CUFF.1269_From_po_0_3606391_1 Examining donor-acceptor pairings in CUFF.1451_From_wil_2_3077447_0 Examining donor-acceptor pairings in CUFF.1089_From_ler_0_4224097_0 Examining donor-acceptor pairings in CUFF.1533_From_wu_0_2683442_0 Examining donor-acceptor pairings in CUFF.1365_From_tsu_0_3179519_0 Examining donor-acceptor pairings in CUFF.1575_From_wu_0_2831218_0 Examining donor-acceptor pairings in CUFF.955_From_edi_0_2766531_0 Examining donor-acceptor pairings in CUFF.1259_From_po_0_3402348_0 Examining donor-acceptor pairings in CUFF.1017_From_kn_0_3566907_0 Examining donor-acceptor pairings in CUFF.1413_From_sf_2_2687786_0 Examining donor-acceptor pairings in CUFF.1109_From_mt_0_4194856_0 Examining donor-acceptor pairings in CUFF.1359_From_tsu_0_3148935_0 Examining donor-acceptor pairings in CUFF.1345_From_sf_2_2689374_0 Examining donor-acceptor pairings in CUFF.1019_From_edi_0_2859720_0 Examining donor-acceptor pairings in CUFF.983_From_ct_1_3241157_0 Examining donor-acceptor pairings in CUFF.971_From_edi_0_2891226_0 Examining donor-acceptor pairings in CUFF.1361_From_tsu_0_3175121_0 Examining donor-acceptor pairings in CUFF.1251_From_po_0_3400198_0 Examining donor-acceptor pairings in CUFF.1167_From_no_0_3096552_0 Examining donor-acceptor pairings in CUFF.993_From_hi_0_2787534_0 Examining donor-acceptor pairings in CUFF.1381_From_tsu_0_3240885_0 Examining donor-acceptor pairings in CUFF.1639_From_zu_0_3291057_0 Examining donor-acceptor pairings in CUFF.1373_From_tsu_0_3208747_0 Examining donor-acceptor pairings in CUFF.919_From_can_0_3258779_0 Examining donor-acceptor pairings in CUFF.1393_From_tsu_0_3228555_0 Examining donor-acceptor pairings in CUFF.1641_From_zu_0_3291057_0 Examining donor-acceptor pairings in CUFF.1029_From_kn_0_3802200_0 Examining donor-acceptor pairings in CUFF.1003_From_hi_0_2790034_0 Examining donor-acceptor pairings in CUFF.1349_From_mt_0_4528444_1 Examining donor-acceptor pairings in CUFF.1335_From_sf_2_2524453_0 Examining donor-acceptor pairings in CUFF.1601_From_zu_0_3250197_1 Examining donor-acceptor pairings in CUFF.1375_From_tsu_0_3211741_0 Examining donor-acceptor pairings in CUFF.1535_From_wu_0_2676799_0 Examining donor-acceptor pairings in CUFF.1165_From_no_0_2959683_0 Examining donor-acceptor pairings in CUFF.1313_From_po_0_3573778_0 Examining donor-acceptor pairings in CUFF.871_From_bur_0_2012810_0 Examining donor-acceptor pairings in CUFF.1453_From_ws_0_3185408_0 Examining donor-acceptor pairings in CUFF.1163_From_no_0_2951521_0 Examining donor-acceptor pairings in CUFF.1553_From_wu_0_2806776_0 Examining donor-acceptor pairings in CUFF.1309_From_rsch_4_4307314_0 Examining donor-acceptor pairings in CUFF.1625_From_zu_0_3243571_0 Examining donor-acceptor pairings in CUFF.941_From_bur_0_2025286_0 Examining donor-acceptor pairings in CUFF.1113_From_mt_0_4206392_0 Examining donor-acceptor pairings in CUFF.973_From_edi_0_2871668_0 Examining donor-acceptor pairings in CUFF.1049_From_ler_0_4002120_0 Examining donor-acceptor pairings in CUFF.1529_From_wu_0_2655159_0 Examining donor-acceptor pairings in CUFF.1301_From_rsch_4_4111713_0 Examining donor-acceptor pairings in CUFF.1013_From_kn_0_3532396_0 Examining donor-acceptor pairings in CUFF.943_From_ct_1_3247037_0 Examining donor-acceptor pairings in CUFF.969_From_edi_0_2888616_0 Examining donor-acceptor pairings in CUFF.1465_From_ws_0_3190963_0 Examining donor-acceptor pairings in CUFF.1543_From_ws_0_3373604_0 Examining donor-acceptor pairings in CUFF.1077_From_ler_0_4225073_0 Examining donor-acceptor pairings in CUFF.1649_From_zu_0_3082201_0 Examining donor-acceptor pairings in CUFF.1423_From_wil_2_3072219_0 Examining donor-acceptor pairings in CUFF.963_From_edi_0_2744702_0 Examining donor-acceptor pairings in CUFF.1431_From_ws_0_3170660_0 Examining donor-acceptor pairings in CUFF.1401_From_wil_2_3050523_0 Examining donor-acceptor pairings in CUFF.1347_From_sf_2_2682779_0 Examining donor-acceptor pairings in CUFF.1411_From_rsch_4_4266550_0 Examining donor-acceptor pairings in CUFF.1563_From_ws_0_3381390_0 Examining donor-acceptor pairings in CUFF.1475_From_ws_0_3313321_0 Examining donor-acceptor pairings in CUFF.1267_From_no_0_3128142_0 Examining donor-acceptor pairings in CUFF.1493_From_wil_2_3087183_0 Examining donor-acceptor pairings in CUFF.1645_From_wu_0_2816600_0 Examining donor-acceptor pairings in CUFF.1087_From_ler_0_4211779_0 Examining donor-acceptor pairings in CUFF.1141_From_mt_0_4449890_0 Found 9 potential island-end pairing junctions done Aligning 782 microexon segments in 180 windows window 100 Checked 1564 segments against 180 windows for microexon junctions Found 7 potential microexon junctions -- microexon -- CUFF.949_From_can_0_3218459_0 88 169 + CUFF.1615_From_zu_0_3118546_0 63 146 + CUFF.949_From_can_0_3218459_0 674 791 + CUFF.1615_From_zu_0_3118546_0 63 162 + CUFF.1615_From_zu_0_3118546_0 63 167 + CUFF.1643_From_wu_0_2816600_0 438 622 + CUFF.1645_From_wu_0_2816600_0 338 522 + -- done -- -- seg -- CUFF.1621_From_zu_0_3275363_0 353 473 + CUFF.1621_From_zu_0_3275363_0 358 473 + CUFF.1621_From_zu_0_3275363_0 364 464 + CUFF.1621_From_zu_0_3275363_0 364 470 - CUFF.1621_From_zu_0_3275363_0 368 465 - CUFF.1621_From_zu_0_3275363_0 368 473 - CUFF.1621_From_zu_0_3275363_0 378 473 + CUFF.1621_From_zu_0_3275363_0 380 457 + CUFF.1621_From_zu_0_3275363_0 380 464 + CUFF.1621_From_zu_0_3275363_0 384 473 + CUFF.1621_From_zu_0_3275363_0 387 465 - CUFF.1621_From_zu_0_3275363_0 387 473 - CUFF.1621_From_zu_0_3275363_0 390 457 + CUFF.1621_From_zu_0_3275363_0 390 459 - CUFF.1621_From_zu_0_3275363_0 393 457 + CUFF.1621_From_zu_0_3275363_0 394 465 - CUFF.1621_From_zu_0_3275363_0 394 473 - CUFF.1621_From_zu_0_3275363_0 399 457 + CUFF.1621_From_zu_0_3275363_0 399 459 - CUFF.1621_From_zu_0_3275363_0 401 457 + CUFF.1621_From_zu_0_3275363_0 401 459 - CUFF.1621_From_zu_0_3275363_0 405 459 - CUFF.1621_From_zu_0_3275363_0 405 464 + CUFF.1075_From_edi_0_2906444_0 531 601 + CUFF.1075_From_edi_0_2906444_0 532 618 - CUFF.1075_From_edi_0_2906444_0 534 587 - CUFF.1075_From_edi_0_2906444_0 534 601 + CUFF.1075_From_edi_0_2906444_0 536 618 - CUFF.1075_From_edi_0_2906444_0 538 618 - CUFF.1075_From_edi_0_2906444_0 546 601 + CUFF.1075_From_edi_0_2906444_0 554 618 - CUFF.1075_From_edi_0_2906444_0 558 618 - CUFF.949_From_can_0_3218459_0 74 171 + CUFF.949_From_can_0_3218459_0 79 158 - CUFF.949_From_can_0_3218459_0 79 169 + CUFF.949_From_can_0_3218459_0 81 171 - CUFF.949_From_can_0_3218459_0 86 171 + CUFF.949_From_can_0_3218459_0 88 158 - CUFF.949_From_can_0_3218459_0 88 169 + CUFF.949_From_can_0_3218459_0 93 158 - CUFF.949_From_can_0_3218459_0 93 169 + CUFF.949_From_can_0_3218459_0 97 169 + CUFF.949_From_can_0_3218459_0 571 780 - CUFF.949_From_can_0_3218459_0 571 791 + CUFF.949_From_can_0_3218459_0 577 797 - CUFF.949_From_can_0_3218459_0 580 797 - CUFF.949_From_can_0_3218459_0 584 763 + CUFF.949_From_can_0_3218459_0 588 791 + CUFF.949_From_can_0_3218459_0 591 763 + CUFF.949_From_can_0_3218459_0 596 763 - CUFF.949_From_can_0_3218459_0 596 773 - CUFF.949_From_can_0_3218459_0 596 797 - CUFF.949_From_can_0_3218459_0 605 763 - CUFF.949_From_can_0_3218459_0 605 773 - CUFF.949_From_can_0_3218459_0 607 763 + CUFF.1643_From_wu_0_2816600_0 39 116 + CUFF.1643_From_wu_0_2816600_0 39 121 - CUFF.1643_From_wu_0_2816600_0 47 118 + CUFF.1643_From_wu_0_2816600_0 56 116 + CUFF.1643_From_wu_0_2816600_0 61 118 + CUFF.1643_From_wu_0_2816600_0 65 121 - CUFF.1643_From_wu_0_2816600_0 65 135 + CUFF.955_From_edi_0_2766531_0 32 88 - CUFF.955_From_edi_0_2766531_0 32 96 + CUFF.955_From_edi_0_2766531_0 36 105 - CUFF.955_From_edi_0_2766531_0 44 103 - CUFF.955_From_edi_0_2766531_0 44 110 + CUFF.1281_From_oy_0_3121110_0 102 197 - CUFF.1281_From_oy_0_3121110_0 105 196 + CUFF.1281_From_oy_0_3121110_0 110 196 + CUFF.1281_From_oy_0_3121110_0 113 196 + CUFF.1281_From_oy_0_3121110_0 128 196 + CUFF.1543_From_ws_0_3373604_0 303 389 - CUFF.1543_From_ws_0_3373604_0 306 389 + CUFF.1543_From_ws_0_3373604_0 309 389 + CUFF.1543_From_ws_0_3373604_0 313 389 - CUFF.1543_From_ws_0_3373604_0 317 389 + CUFF.1543_From_ws_0_3373604_0 325 392 + CUFF.1543_From_ws_0_3373604_0 328 389 + CUFF.1543_From_ws_0_3373604_0 330 389 + CUFF.1543_From_ws_0_3373604_0 333 389 + CUFF.1543_From_ws_0_3373604_0 337 397 + CUFF.1267_From_no_0_3128142_0 107 193 - CUFF.1267_From_no_0_3128142_0 107 200 + CUFF.1267_From_no_0_3128142_0 116 198 - CUFF.1267_From_no_0_3128142_0 116 201 - CUFF.1267_From_no_0_3128142_0 116 207 - CUFF.1267_From_no_0_3128142_0 116 224 - CUFF.1267_From_no_0_3128142_0 120 193 - CUFF.1267_From_no_0_3128142_0 120 200 + CUFF.1267_From_no_0_3128142_0 120 204 - CUFF.1267_From_no_0_3128142_0 120 213 + CUFF.1267_From_no_0_3128142_0 135 193 - CUFF.1267_From_no_0_3128142_0 135 200 + CUFF.1267_From_no_0_3128142_0 135 204 - CUFF.1267_From_no_0_3128142_0 135 213 + CUFF.1267_From_no_0_3128142_0 138 204 - CUFF.1267_From_no_0_3128142_0 138 213 + CUFF.1267_From_no_0_3128142_0 141 224 + CUFF.1267_From_no_0_3128142_0 144 224 + CUFF.1621_From_zu_0_3275363_0 353 480 + CUFF.1621_From_zu_0_3275363_0 358 480 + CUFF.1621_From_zu_0_3275363_0 364 475 - CUFF.1621_From_zu_0_3275363_0 364 487 + CUFF.1621_From_zu_0_3275363_0 368 480 - CUFF.1621_From_zu_0_3275363_0 378 480 + CUFF.1621_From_zu_0_3275363_0 380 464 + CUFF.1621_From_zu_0_3275363_0 380 487 + CUFF.1621_From_zu_0_3275363_0 384 480 + CUFF.1621_From_zu_0_3275363_0 387 480 - CUFF.1621_From_zu_0_3275363_0 390 464 + CUFF.1621_From_zu_0_3275363_0 390 470 - CUFF.1621_From_zu_0_3275363_0 393 464 + CUFF.1621_From_zu_0_3275363_0 394 480 - CUFF.1621_From_zu_0_3275363_0 399 464 + CUFF.1621_From_zu_0_3275363_0 399 470 - CUFF.1621_From_zu_0_3275363_0 401 464 + CUFF.1621_From_zu_0_3275363_0 401 470 - CUFF.1621_From_zu_0_3275363_0 405 470 - CUFF.1075_From_edi_0_2906444_0 534 592 - CUFF.949_From_can_0_3218459_0 74 174 + CUFF.949_From_can_0_3218459_0 79 162 - CUFF.949_From_can_0_3218459_0 81 174 - CUFF.949_From_can_0_3218459_0 86 174 + CUFF.949_From_can_0_3218459_0 88 162 - CUFF.949_From_can_0_3218459_0 93 162 - CUFF.949_From_can_0_3218459_0 571 802 + CUFF.949_From_can_0_3218459_0 571 806 - CUFF.949_From_can_0_3218459_0 577 804 - CUFF.949_From_can_0_3218459_0 580 804 - CUFF.949_From_can_0_3218459_0 588 802 + CUFF.949_From_can_0_3218459_0 596 804 - CUFF.1643_From_wu_0_2816600_0 39 125 - CUFF.1643_From_wu_0_2816600_0 39 135 + CUFF.1643_From_wu_0_2816600_0 47 132 + CUFF.1643_From_wu_0_2816600_0 56 135 + CUFF.1643_From_wu_0_2816600_0 61 132 + CUFF.1643_From_wu_0_2816600_0 65 125 - CUFF.955_From_edi_0_2766531_0 32 103 - CUFF.955_From_edi_0_2766531_0 32 110 + CUFF.955_From_edi_0_2766531_0 36 111 - CUFF.955_From_edi_0_2766531_0 44 107 - CUFF.1281_From_oy_0_3121110_0 102 209 - CUFF.1281_From_oy_0_3121110_0 105 208 + CUFF.1281_From_oy_0_3121110_0 110 208 + CUFF.1281_From_oy_0_3121110_0 113 208 + CUFF.1281_From_oy_0_3121110_0 128 208 + CUFF.1543_From_ws_0_3373604_0 303 397 - CUFF.1543_From_ws_0_3373604_0 306 397 + CUFF.1543_From_ws_0_3373604_0 309 397 + CUFF.1543_From_ws_0_3373604_0 313 397 - CUFF.1543_From_ws_0_3373604_0 317 397 + CUFF.1543_From_ws_0_3373604_0 325 395 + CUFF.1543_From_ws_0_3373604_0 328 397 + CUFF.1543_From_ws_0_3373604_0 330 397 + CUFF.1543_From_ws_0_3373604_0 333 397 + CUFF.1543_From_ws_0_3373604_0 337 400 + CUFF.1267_From_no_0_3128142_0 107 204 - CUFF.1267_From_no_0_3128142_0 107 213 + CUFF.1267_From_no_0_3128142_0 116 207 - CUFF.1267_From_no_0_3128142_0 116 221 - CUFF.1267_From_no_0_3128142_0 116 224 - CUFF.1267_From_no_0_3128142_0 120 204 - CUFF.1267_From_no_0_3128142_0 120 213 + CUFF.1267_From_no_0_3128142_0 120 215 - CUFF.1267_From_no_0_3128142_0 120 218 + CUFF.1267_From_no_0_3128142_0 135 204 - CUFF.1267_From_no_0_3128142_0 135 213 + CUFF.1267_From_no_0_3128142_0 135 215 - CUFF.1267_From_no_0_3128142_0 135 218 + CUFF.1267_From_no_0_3128142_0 138 215 - CUFF.1267_From_no_0_3128142_0 138 218 + CUFF.1621_From_zu_0_3275363_0 353 489 + CUFF.1621_From_zu_0_3275363_0 358 489 + CUFF.1621_From_zu_0_3275363_0 364 484 - CUFF.1621_From_zu_0_3275363_0 368 489 - CUFF.1621_From_zu_0_3275363_0 378 489 + CUFF.1621_From_zu_0_3275363_0 390 475 - CUFF.1621_From_zu_0_3275363_0 399 475 - CUFF.1621_From_zu_0_3275363_0 401 475 - CUFF.1621_From_zu_0_3275363_0 405 475 - CUFF.949_From_can_0_3218459_0 79 177 - CUFF.949_From_can_0_3218459_0 88 177 - CUFF.949_From_can_0_3218459_0 93 177 - CUFF.949_From_can_0_3218459_0 571 808 - CUFF.1643_From_wu_0_2816600_0 47 138 + CUFF.1643_From_wu_0_2816600_0 61 138 + CUFF.955_From_edi_0_2766531_0 32 107 - CUFF.1281_From_oy_0_3121110_0 102 218 - CUFF.1281_From_oy_0_3121110_0 105 213 + CUFF.1281_From_oy_0_3121110_0 110 213 + CUFF.1281_From_oy_0_3121110_0 113 213 + CUFF.1281_From_oy_0_3121110_0 128 213 + CUFF.1543_From_ws_0_3373604_0 303 400 - CUFF.1543_From_ws_0_3373604_0 306 400 + CUFF.1543_From_ws_0_3373604_0 309 400 + CUFF.1543_From_ws_0_3373604_0 313 400 - CUFF.1543_From_ws_0_3373604_0 317 400 + CUFF.1543_From_ws_0_3373604_0 325 403 + CUFF.1543_From_ws_0_3373604_0 328 400 + CUFF.1543_From_ws_0_3373604_0 330 400 + CUFF.1543_From_ws_0_3373604_0 333 400 + CUFF.1543_From_ws_0_3373604_0 337 407 + CUFF.1267_From_no_0_3128142_0 107 215 - CUFF.1267_From_no_0_3128142_0 107 218 + CUFF.1267_From_no_0_3128142_0 116 221 - CUFF.1267_From_no_0_3128142_0 120 215 - CUFF.1267_From_no_0_3128142_0 120 218 + CUFF.1267_From_no_0_3128142_0 120 220 + CUFF.1267_From_no_0_3128142_0 135 215 - CUFF.1267_From_no_0_3128142_0 135 218 + CUFF.1267_From_no_0_3128142_0 135 220 + CUFF.1267_From_no_0_3128142_0 138 220 + CUFF.949_From_can_0_3218459_0 79 180 - CUFF.949_From_can_0_3218459_0 88 180 - CUFF.949_From_can_0_3218459_0 93 180 - CUFF.1281_From_oy_0_3121110_0 102 221 - CUFF.1281_From_oy_0_3121110_0 105 217 + CUFF.1281_From_oy_0_3121110_0 110 217 + CUFF.1281_From_oy_0_3121110_0 113 217 + CUFF.1281_From_oy_0_3121110_0 128 217 + CUFF.1543_From_ws_0_3373604_0 313 407 - CUFF.1543_From_ws_0_3373604_0 317 407 + CUFF.1543_From_ws_0_3373604_0 328 407 + CUFF.1543_From_ws_0_3373604_0 330 407 + CUFF.1543_From_ws_0_3373604_0 333 407 + CUFF.1267_From_no_0_3128142_0 107 220 + CUFF.1267_From_no_0_3128142_0 120 220 + CUFF.1267_From_no_0_3128142_0 120 227 + CUFF.1267_From_no_0_3128142_0 135 220 + CUFF.1267_From_no_0_3128142_0 135 227 + CUFF.1267_From_no_0_3128142_0 138 227 + CUFF.949_From_can_0_3218459_0 79 186 - CUFF.949_From_can_0_3218459_0 88 186 - CUFF.949_From_can_0_3218459_0 93 186 - -- done -- -- cov -- CUFF.949_From_can_0_3218459_0 88 169 + CUFF.1393_From_tsu_0_3228555_0 265 448 - CUFF.949_From_can_0_3218459_0 121 408 + CUFF.1601_From_zu_0_3250197_1 332 403 - CUFF.973_From_edi_0_2871668_0 171 381 - CUFF.1643_From_wu_0_2816600_0 207 732 - CUFF.1313_From_po_0_3573778_0 101 460 - CUFF.1645_From_wu_0_2816600_0 107 632 - CUFF.1413_From_sf_2_2687786_0 1218 2114 - -- done -- -- buf -- -- done -- Reporting potential splice junctions...done Reported 235 total possible splices Reporting potential deletions... Reporting potential insertions...