segment_juncs v1.2.0 (1752) --------------------------- Loading reference sequences... Loading CUFF.1649_From_zu_0_3082201_0...done Loading CUFF.1231_From_oy_0_2965192_0...done Loading CUFF.1337_From_sf_2_2662232_0...done Loading CUFF.1509_From_wu_0_2616263_0...done Loading CUFF.1149_From_mt_0_4217716_0...done Loading CUFF.1275_From_po_0_3332479_0...done Loading CUFF.1615_From_zu_0_3118546_0...done Loading CUFF.1211_From_po_0_3269389_0...done Loading CUFF.1519_From_wu_0_2597064_0...done Loading CUFF.1335_From_sf_2_2524453_0...done Loading CUFF.1507_From_wu_0_2587993_0...done Loading CUFF.1155_From_no_0_2905273_0...done Loading CUFF.1271_From_rsch_4_4034850_0...done Loading CUFF.1209_From_po_0_3295404_0...done Loading CUFF.1523_From_wu_0_2638225_0...done Loading CUFF.867_From_bur_0_1863298_0...done Loading CUFF.1349_From_mt_0_4528444_1...done Loading CUFF.995_From_hi_0_2751582_0...done Loading CUFF.981_From_hi_0_2690171_0...done Loading CUFF.1027_From_kn_0_3558357_0...done Loading CUFF.963_From_edi_0_2744702_0...done Loading CUFF.1503_From_wu_0_2588697_0...done Loading CUFF.1093_From_mt_0_4130072_0...done Loading CUFF.1219_From_po_0_3319326_0...done Loading CUFF.1119_From_hi_0_2939638_0...done Loading CUFF.1019_From_edi_0_2859720_0...done Loading CUFF.1547_From_wu_0_2685428_0...done Loading CUFF.1353_From_tsu_0_3002533_0...done Loading CUFF.1569_From_zu_0_3035650_0...done Loading CUFF.1141_From_mt_0_4449890_0...done Loading CUFF.1529_From_wu_0_2655159_0...done Loading CUFF.1045_From_kn_0_3605300_0...done Loading CUFF.1531_From_ws_0_3340488_0...done Loading CUFF.1497_From_ws_0_3380934_0...done Loading CUFF.1575_From_wu_0_2831218_0...done Loading CUFF.1013_From_kn_0_3532396_0...done Loading CUFF.1095_From_mt_0_4131964_0...done Loading CUFF.1079_From_mt_0_4085357_0...done Loading CUFF.921_From_can_0_3233581_0...done Loading CUFF.869_From_bur_0_1873494_0...done Loading CUFF.1081_From_mt_0_4099484_0...done Loading CUFF.1505_From_wu_0_2607348_0...done Loading CUFF.1427_From_ws_0_3077529_0...done Loading CUFF.1515_From_wu_0_2648785_0...done Loading CUFF.1285_From_rsch_4_4085063_0...done Loading CUFF.1153_From_no_0_2923846_0...done Loading CUFF.1307_From_rsch_4_4277566_0...done Loading CUFF.1281_From_oy_0_3121110_0...done Loading CUFF.1301_From_rsch_4_4111713_0...done Loading CUFF.907_From_can_0_3122480_0...done Loading CUFF.1213_From_po_0_3316390_0...done Loading CUFF.1535_From_wu_0_2676799_0...done Loading CUFF.1003_From_hi_0_2790034_0...done Loading CUFF.1395_From_wil_2_2904915_0...done Loading CUFF.1631_From_zu_0_3277661_1...done Loading CUFF.1109_From_mt_0_4194856_0...done Loading CUFF.1207_From_po_0_3308932_0...done Loading CUFF.1397_From_tsu_0_3228017_0...done Loading CUFF.1459_From_ws_0_3182508_0...done Loading CUFF.1613_From_zu_0_3259399_1...done Loading CUFF.1008_From_kn_0_3525938_0...done Loading CUFF.1495_From_ws_0_3371988_0...done Loading CUFF.1017_From_kn_0_3566907_0...done Loading CUFF.1165_From_no_0_2959683_0...done Loading CUFF.1493_From_wil_2_3087183_0...done Loading CUFF.1573_From_zu_0_3065917_0...done Loading CUFF.1099_From_mt_0_4177596_0...done Loading CUFF.1253_From_po_0_3387411_0...done Loading CUFF.1293_From_rsch_4_4107621_0...done Loading CUFF.1591_From_zu_0_3092045_0...done Loading CUFF.1313_From_po_0_3573778_0...done Loading CUFF.1117_From_hi_0_2939638_0...done Loading CUFF.895_From_can_0_3069992_0...done Loading CUFF.1069_From_hi_0_2916184_0...done Loading CUFF.1637_From_zu_0_3277661_0...done Loading CUFF.1163_From_no_0_2951521_0...done Loading CUFF.1611_From_zu_0_3255503_0...done Loading CUFF.1367_From_tsu_0_3135135_0...done Loading CUFF.1453_From_ws_0_3185408_0...done Loading CUFF.1599_From_zu_0_3200689_0...done Loading CUFF.1315_From_rsch_4_4277566_0...done Loading CUFF.1229_From_po_0_3339041_0...done Loading CUFF.1385_From_sf_2_2653966_0...done Loading CUFF.1617_From_zu_0_3278243_0...done Loading CUFF.1521_From_ws_0_3344070_0...done Loading CUFF.1061_From_ler_0_4016532_0...done Loading CUFF.927_From_ct_1_3108889_0...done Loading CUFF.901_From_can_0_3094988_0...done Loading CUFF.1625_From_zu_0_3243571_0...done Loading CUFF.1481_From_ws_0_3349444_1...done Loading CUFF.1629_From_zu_0_3287917_0...done Loading CUFF.1139_From_ler_0_4211779_1...done Loading CUFF.1287_From_rsch_4_4099439_0...done Loading CUFF.1101_From_mt_0_4188374_0...done Loading CUFF.953_From_edi_0_2759591_0...done Loading CUFF.973_From_edi_0_2871668_0...done Loading CUFF.1597_From_zu_0_3181459_0...done Loading CUFF.1465_From_ws_0_3190963_0...done Loading CUFF.1233_From_po_0_3365309_0...done Loading CUFF.991_From_edi_0_2891968_0...done Loading CUFF.1603_From_zu_0_3242889_0...done Loading CUFF.937_From_can_0_3239881_0...done Loading CUFF.993_From_hi_0_2787534_0...done Loading CUFF.1049_From_ler_0_4002120_0...done Loading CUFF.929_From_can_0_3263637_0...done Loading CUFF.1157_From_no_0_2939843_0...done Loading CUFF.1055_From_ler_0_4004770_0...done Loading CUFF.1539_From_wu_0_2702886_0...done Loading CUFF.989_From_edi_0_2932438_0...done Loading CUFF.1011_From_edi_0_2918156_0...done Loading CUFF.1593_From_zu_0_3112556_0...done Loading CUFF.1113_From_mt_0_4206392_0...done Loading CUFF.1431_From_ws_0_3170660_0...done Loading CUFF.1443_From_wil_2_3052273_0...done Loading CUFF.1533_From_wu_0_2683442_0...done Loading CUFF.881_From_bur_0_1969548_0...done Loading CUFF.1401_From_wil_2_3050523_0...done Loading CUFF.1527_From_wu_0_2675967_0...done Loading CUFF.1259_From_po_0_3402348_0...done Loading CUFF.1379_From_sf_2_2656790_0...done Loading CUFF.955_From_edi_0_2766531_0...done Loading CUFF.1295_From_rsch_4_4118037_0...done Loading CUFF.1007_From_edi_0_2888586_0...done Loading CUFF.935_From_bur_0_2020452_0...done Loading CUFF.1491_From_ws_0_3373966_0...done Loading CUFF.1563_From_ws_0_3381390_0...done Loading CUFF.1133_From_mt_0_4399784_0...done Loading CUFF.1251_From_po_0_3400198_0...done Loading CUFF.1121_From_mt_0_4226690_0...done Loading CUFF.1411_From_rsch_4_4266550_0...done Loading CUFF.1489_From_ws_0_3372620_0...done Loading CUFF.1463_From_ws_0_3190679_0...done Loading CUFF.1087_From_ler_0_4211779_0...done Loading CUFF.1559_From_wu_0_2824162_0...done Loading CUFF.983_From_ct_1_3241157_0...done Loading CUFF.1175_From_hi_0_2953648_0...done Loading CUFF.967_From_edi_0_2887084_2...done Loading CUFF.1455_From_wil_2_3068737_0...done Loading CUFF.1645_From_wu_0_2816600_0...done Loading CUFF.1473_From_ws_0_3293243_0...done Loading CUFF.1399_From_wil_2_2978735_0...done Loading CUFF.969_From_edi_0_2888616_0...done Loading CUFF.1305_From_rsch_4_4263688_0...done Loading CUFF.1373_From_tsu_0_3208747_0...done Loading CUFF.985_From_edi_0_2921730_0...done Loading CUFF.913_From_can_0_3217045_0...done Loading CUFF.1433_From_wil_2_3079625_0...done Loading CUFF.961_From_ct_1_3302721_0...done Loading CUFF.1601_From_zu_0_3250197_1...done Loading CUFF.1173_From_no_0_3113578_1...done Loading CUFF.1187_From_oy_0_3098144_0...done Loading CUFF.1351_From_tsu_0_3175121_0...done Loading CUFF.1543_From_ws_0_3373604_0...done Loading CUFF.1409_From_wil_2_3066229_0...done Loading CUFF.911_From_can_0_3230893_0...done Loading CUFF.1639_From_zu_0_3291057_0...done Loading CUFF.1075_From_edi_0_2906444_0...done Loading CUFF.1471_From_tsu_0_3212935_0...done Loading CUFF.1413_From_sf_2_2687786_0...done Loading CUFF.1167_From_no_0_3096552_0...done Loading CUFF.875_From_bur_0_1999718_0...done Loading CUFF.1475_From_ws_0_3313321_0...done Loading CUFF.1483_From_ws_0_3364198_0...done Loading CUFF.1565_From_zu_0_3075813_0...done Loading CUFF.1363_From_sf_2_2671632_0...done Loading CUFF.1197_From_oy_0_3103794_0...done Loading CUFF.1311_From_rsch_4_4275442_0...done Loading CUFF.1343_From_sf_2_2689374_0...done Loading CUFF.1339_From_sf_2_2689374_0...done Loading CUFF.1359_From_tsu_0_3148935_0...done Loading CUFF.1223_From_po_0_3340213_0...done Loading CUFF.1329_From_sf_2_2642906_0...done Loading CUFF.1407_From_wil_2_3063473_0...done Loading CUFF.1641_From_zu_0_3291057_0...done Loading CUFF.1035_From_kn_0_3751597_0...done Loading CUFF.1169_From_no_0_3101262_0...done Loading CUFF.1423_From_wil_2_3072219_0...done Loading CUFF.1361_From_tsu_0_3175121_0...done Loading CUFF.1325_From_sf_2_2626132_0...done Loading CUFF.1261_From_po_0_3599571_0...done Loading CUFF.1375_From_tsu_0_3211741_0...done Loading CUFF.1417_From_wil_2_3078633_1...done Loading CUFF.1583_From_wu_0_2829124_0...done Loading CUFF.1267_From_no_0_3128142_0...done Loading CUFF.1309_From_rsch_4_4307314_0...done Loading CUFF.1499_From_ws_0_3382714_0...done Loading CUFF.1177_From_no_0_3116640_0...done Loading CUFF.1605_From_zu_0_3257369_0...done Loading CUFF.865_From_bur_0_1967596_0...done Loading CUFF.949_From_can_0_3218459_0...done Loading CUFF.1419_From_sf_2_2701328_0...done Loading CUFF.1345_From_sf_2_2689374_0...done Loading CUFF.1619_From_zu_0_3280025_0...done Loading CUFF.1065_From_ler_0_4153595_0...done Loading CUFF.1595_From_zu_0_3238769_0...done Loading CUFF.1111_From_ler_0_4165287_0...done Loading CUFF.1215_From_oy_0_3162092_0...done Loading CUFF.975_From_edi_0_2902016_0...done Loading CUFF.1545_From_wu_0_2770362_0...done Loading CUFF.1089_From_ler_0_4224097_0...done Loading CUFF.943_From_ct_1_3247037_0...done Loading CUFF.1077_From_ler_0_4225073_0...done Loading CUFF.1607_From_zu_0_3255169_0...done Loading CUFF.1487_From_ws_0_3347582_0...done Loading CUFF.1643_From_wu_0_2816600_0...done Loading CUFF.1609_From_zu_0_3260873_0...done Loading CUFF.1189_From_oy_0_3115434_0...done Loading CUFF.1467_From_ws_0_3309675_0...done Loading CUFF.1553_From_wu_0_2806776_0...done Loading CUFF.1439_From_wil_2_3089541_0...done Loading CUFF.879_From_bur_0_2021834_0...done Loading CUFF.1265_From_po_0_3577252_0...done Loading CUFF.1073_From_ler_0_4209589_1...done Loading CUFF.1479_From_ws_0_3339092_0...done Loading CUFF.1451_From_wil_2_3077447_0...done Loading CUFF.1347_From_sf_2_2682779_0...done Loading CUFF.1635_From_zu_0_3263539_0...done Loading CUFF.1579_From_wu_0_2802868_0...done Loading CUFF.1365_From_tsu_0_3179519_0...done Loading CUFF.1513_From_ws_0_3381290_0...done Loading CUFF.915_From_can_0_3231205_0...done Loading CUFF.1383_From_tsu_0_3242833_1...done Loading CUFF.1415_From_wil_2_3082811_1...done Loading CUFF.1421_From_tsu_0_3215821_0...done Loading CUFF.919_From_can_0_3258779_0...done Loading CUFF.909_From_can_0_3223655_0...done Loading CUFF.1029_From_kn_0_3802200_0...done Loading CUFF.1393_From_tsu_0_3228555_0...done Loading CUFF.1437_From_wil_2_3088151_0...done Loading CUFF.1377_From_tsu_0_3215671_0...done Loading CUFF.1633_From_zu_0_3280213_0...done Loading CUFF.1333_From_sf_2_2666154_1...done Loading CUFF.1405_From_wil_2_3052951_0...done Loading CUFF.971_From_edi_0_2891226_0...done Loading CUFF.1623_From_zu_0_3289907_1...done Loading CUFF.1557_From_wu_0_2824308_0...done Loading CUFF.1015_From_hi_0_2966608_0...done Loading CUFF.951_From_ct_1_3280175_0...done Loading CUFF.1159_From_no_0_3088052_0...done Loading CUFF.1621_From_zu_0_3275363_0...done Loading CUFF.871_From_bur_0_2012810_0...done Loading CUFF.889_From_bur_0_2032354_0...done Loading CUFF.1647_From_zu_0_3289907_1...done Loading CUFF.1289_From_po_0_3606391_0...done Loading CUFF.1053_From_kn_0_3819922_1...done Loading CUFF.877_From_bur_0_2022518_0...done Loading CUFF.1371_From_tsu_0_3211333_0...done Loading CUFF.1279_From_po_0_3599571_0...done Loading CUFF.1577_From_wu_0_2832848_0...done Loading CUFF.1033_From_kn_0_3799876_0...done Loading CUFF.1561_From_wu_0_2827904_0...done Loading CUFF.1041_From_kn_0_3824150_0...done Loading CUFF.1369_From_sf_2_2700286_0...done Loading CUFF.1627_From_zu_0_3262887_0...done Loading CUFF.899_From_bur_0_2022518_0...done Loading CUFF.941_From_bur_0_2025286_0...done Loading CUFF.1585_From_wu_0_2837848_0...done Loading CUFF.1269_From_po_0_3606391_1...done Loading CUFF.1381_From_tsu_0_3240885_0...done Loading CUFF.1181_From_no_0_3120392_0...done Loading CUFF.1501_From_ws_0_3365892_0...done Loading CUFF.1425_From_wil_2_3091415_1...done Loading CUFF.1537_From_ws_0_3382500_0...done Loading CUFF.873_From_bur_0_2020452_0...done Loading CUFF.1277_From_po_0_3599571_0...done Loading CUFF.1447_From_wil_2_3091415_1...done Loading CUFF.897_From_bur_0_2022518_0...done Loading CUFF.997_From_edi_0_2934714_0...done Loading CUFF.977_From_edi_0_2934714_0...done Loading CUFF.979_From_edi_0_2934714_0...done Loading CUFF.1485_From_ws_0_3371988_0...done Loading left segment hits... Microaligned 548 segments done. Found 144 potential split-segment junctions Found 12 potential small deletions Found 9 potential small insertions Indexing extensions in ./ler_0.TOnovel/tmp/left_kept_reads_seg1_missing.fq Indexing extensions in ./ler_0.TOnovel/tmp/left_kept_reads_seg2_missing.fq Indexing extensions in ./ler_0.TOnovel/tmp/left_kept_reads_seg3_missing.fq Total extensions: 37396977 Total extensions: 37396977 Total extensions: 37396977 Looking for junctions by island end pairings Adding hits from segment file 0 to coverage map Adding hits from segment file 1 to coverage map Adding hits from segment file 2 to coverage map Map covers 24071 bases Map covers 23760 bases in sufficiently long segments Map contains 308 good islands 10052 are left looking bases 8162 are right looking bases Collecting potential splice sites in islands reporting synthetic splice junctions... Examining donor-acceptor pairings in CUFF.951_From_ct_1_3280175_0 Examining donor-acceptor pairings in CUFF.1561_From_wu_0_2827904_0 Examining donor-acceptor pairings in CUFF.1463_From_ws_0_3190679_0 Examining donor-acceptor pairings in CUFF.1329_From_sf_2_2642906_0 Examining donor-acceptor pairings in CUFF.1207_From_po_0_3308932_0 Examining donor-acceptor pairings in CUFF.961_From_ct_1_3302721_0 Examining donor-acceptor pairings in CUFF.1279_From_po_0_3599571_0 Examining donor-acceptor pairings in CUFF.1253_From_po_0_3387411_0 Examining donor-acceptor pairings in CUFF.1399_From_wil_2_2978735_0 Examining donor-acceptor pairings in CUFF.1487_From_ws_0_3347582_0 Examining donor-acceptor pairings in CUFF.1275_From_po_0_3332479_0 Examining donor-acceptor pairings in CUFF.1531_From_ws_0_3340488_0 Examining donor-acceptor pairings in CUFF.1521_From_ws_0_3344070_0 Examining donor-acceptor pairings in CUFF.1577_From_wu_0_2832848_0 Examining donor-acceptor pairings in CUFF.1621_From_zu_0_3275363_0 Examining donor-acceptor pairings in CUFF.1611_From_zu_0_3255503_0 Examining donor-acceptor pairings in CUFF.1631_From_zu_0_3277661_1 Examining donor-acceptor pairings in CUFF.1513_From_ws_0_3381290_0 Examining donor-acceptor pairings in CUFF.1073_From_ler_0_4209589_1 Examining donor-acceptor pairings in CUFF.1643_From_wu_0_2816600_0 Examining donor-acceptor pairings in CUFF.1265_From_po_0_3577252_0 Examining donor-acceptor pairings in CUFF.1637_From_zu_0_3277661_0 Examining donor-acceptor pairings in CUFF.1117_From_hi_0_2939638_0 Examining donor-acceptor pairings in CUFF.1215_From_oy_0_3162092_0 Examining donor-acceptor pairings in CUFF.911_From_can_0_3230893_0 Examining donor-acceptor pairings in CUFF.1271_From_rsch_4_4034850_0 Examining donor-acceptor pairings in CUFF.869_From_bur_0_1873494_0 Examining donor-acceptor pairings in CUFF.1101_From_mt_0_4188374_0 Examining donor-acceptor pairings in CUFF.1455_From_wil_2_3068737_0 Examining donor-acceptor pairings in CUFF.1573_From_zu_0_3065917_0 Examining donor-acceptor pairings in CUFF.909_From_can_0_3223655_0 Examining donor-acceptor pairings in CUFF.1369_From_sf_2_2700286_0 Examining donor-acceptor pairings in CUFF.1089_From_ler_0_4224097_0 Examining donor-acceptor pairings in CUFF.1365_From_tsu_0_3179519_0 Examining donor-acceptor pairings in CUFF.1277_From_po_0_3599571_0 Examining donor-acceptor pairings in CUFF.1575_From_wu_0_2831218_0 Examining donor-acceptor pairings in CUFF.1615_From_zu_0_3118546_0 Examining donor-acceptor pairings in CUFF.955_From_edi_0_2766531_0 Examining donor-acceptor pairings in CUFF.1259_From_po_0_3402348_0 Examining donor-acceptor pairings in CUFF.1017_From_kn_0_3566907_0 Examining donor-acceptor pairings in CUFF.1583_From_wu_0_2829124_0 Examining donor-acceptor pairings in CUFF.953_From_edi_0_2759591_0 Examining donor-acceptor pairings in CUFF.1413_From_sf_2_2687786_0 Examining donor-acceptor pairings in CUFF.1109_From_mt_0_4194856_0 Examining donor-acceptor pairings in CUFF.1175_From_hi_0_2953648_0 Examining donor-acceptor pairings in CUFF.1359_From_tsu_0_3148935_0 Examining donor-acceptor pairings in CUFF.1019_From_edi_0_2859720_0 Examining donor-acceptor pairings in CUFF.983_From_ct_1_3241157_0 Examining donor-acceptor pairings in CUFF.1361_From_tsu_0_3175121_0 Examining donor-acceptor pairings in CUFF.1251_From_po_0_3400198_0 Examining donor-acceptor pairings in CUFF.1381_From_tsu_0_3240885_0 Examining donor-acceptor pairings in CUFF.1639_From_zu_0_3291057_0 Examining donor-acceptor pairings in CUFF.1641_From_zu_0_3291057_0 Examining donor-acceptor pairings in CUFF.1169_From_no_0_3101262_0 Examining donor-acceptor pairings in CUFF.1325_From_sf_2_2626132_0 Examining donor-acceptor pairings in CUFF.1003_From_hi_0_2790034_0 Examining donor-acceptor pairings in CUFF.1349_From_mt_0_4528444_1 Examining donor-acceptor pairings in CUFF.1069_From_hi_0_2916184_0 Examining donor-acceptor pairings in CUFF.1547_From_wu_0_2685428_0 Examining donor-acceptor pairings in CUFF.1601_From_zu_0_3250197_1 Examining donor-acceptor pairings in CUFF.1375_From_tsu_0_3211741_0 Examining donor-acceptor pairings in CUFF.1535_From_wu_0_2676799_0 Examining donor-acceptor pairings in CUFF.1165_From_no_0_2959683_0 Examining donor-acceptor pairings in CUFF.1559_From_wu_0_2824162_0 Examining donor-acceptor pairings in CUFF.1311_From_rsch_4_4275442_0 Examining donor-acceptor pairings in CUFF.1453_From_ws_0_3185408_0 Examining donor-acceptor pairings in CUFF.1163_From_no_0_2951521_0 Examining donor-acceptor pairings in CUFF.1553_From_wu_0_2806776_0 Examining donor-acceptor pairings in CUFF.1309_From_rsch_4_4307314_0 Examining donor-acceptor pairings in CUFF.1527_From_wu_0_2675967_0 Examining donor-acceptor pairings in CUFF.1625_From_zu_0_3243571_0 Examining donor-acceptor pairings in CUFF.941_From_bur_0_2025286_0 Examining donor-acceptor pairings in CUFF.1113_From_mt_0_4206392_0 Examining donor-acceptor pairings in CUFF.1635_From_zu_0_3263539_0 Examining donor-acceptor pairings in CUFF.1443_From_wil_2_3052273_0 Examining donor-acceptor pairings in CUFF.943_From_ct_1_3247037_0 Examining donor-acceptor pairings in CUFF.1491_From_ws_0_3373966_0 Examining donor-acceptor pairings in CUFF.969_From_edi_0_2888616_0 Examining donor-acceptor pairings in CUFF.1121_From_mt_0_4226690_0 Examining donor-acceptor pairings in CUFF.1111_From_ler_0_4165287_0 Examining donor-acceptor pairings in CUFF.1213_From_po_0_3316390_0 Examining donor-acceptor pairings in CUFF.1619_From_zu_0_3280025_0 Examining donor-acceptor pairings in CUFF.1397_From_tsu_0_3228017_0 Examining donor-acceptor pairings in CUFF.967_From_edi_0_2887084_2 Examining donor-acceptor pairings in CUFF.1439_From_wil_2_3089541_0 Examining donor-acceptor pairings in CUFF.1077_From_ler_0_4225073_0 Examining donor-acceptor pairings in CUFF.1011_From_edi_0_2918156_0 Examining donor-acceptor pairings in CUFF.1473_From_ws_0_3293243_0 Examining donor-acceptor pairings in CUFF.1417_From_wil_2_3078633_1 Examining donor-acceptor pairings in CUFF.1409_From_wil_2_3066229_0 Examining donor-acceptor pairings in CUFF.1649_From_zu_0_3082201_0 Examining donor-acceptor pairings in CUFF.1053_From_kn_0_3819922_1 Examining donor-acceptor pairings in CUFF.963_From_edi_0_2744702_0 Examining donor-acceptor pairings in CUFF.1431_From_ws_0_3170660_0 Examining donor-acceptor pairings in CUFF.1411_From_rsch_4_4266550_0 Examining donor-acceptor pairings in CUFF.1563_From_ws_0_3381390_0 Examining donor-acceptor pairings in CUFF.1267_From_no_0_3128142_0 Examining donor-acceptor pairings in CUFF.1493_From_wil_2_3087183_0 Examining donor-acceptor pairings in CUFF.1645_From_wu_0_2816600_0 Examining donor-acceptor pairings in CUFF.1139_From_ler_0_4211779_1 Examining donor-acceptor pairings in CUFF.1087_From_ler_0_4211779_0 Examining donor-acceptor pairings in CUFF.1141_From_mt_0_4449890_0 Found 101 potential island-end pairing junctions done Aligning 548 microexon segments in 208 windows window 100 window 200 Checked 1096 segments against 208 windows for microexon junctions Found 2 potential microexon junctions -- microexon -- CUFF.1111_From_ler_0_4165287_0 539 654 + CUFF.1175_From_hi_0_2953648_0 476 617 - -- done -- -- seg -- CUFF.961_From_ct_1_3302721_0 151 331 + CUFF.961_From_ct_1_3302721_0 157 319 - CUFF.961_From_ct_1_3302721_0 157 324 + CUFF.961_From_ct_1_3302721_0 159 331 + CUFF.961_From_ct_1_3302721_0 165 319 - CUFF.961_From_ct_1_3302721_0 165 324 + CUFF.1621_From_zu_0_3275363_0 364 457 + CUFF.1621_From_zu_0_3275363_0 364 459 - CUFF.1621_From_zu_0_3275363_0 368 465 - CUFF.1621_From_zu_0_3275363_0 368 473 - CUFF.1621_From_zu_0_3275363_0 378 473 + CUFF.1621_From_zu_0_3275363_0 380 457 + CUFF.1621_From_zu_0_3275363_0 384 473 + CUFF.1621_From_zu_0_3275363_0 387 465 - CUFF.1621_From_zu_0_3275363_0 387 473 - CUFF.1583_From_wu_0_2829124_0 171 231 - CUFF.1583_From_wu_0_2829124_0 174 231 + CUFF.1583_From_wu_0_2829124_0 177 231 - CUFF.1175_From_hi_0_2953648_0 337 606 + CUFF.1175_From_hi_0_2953648_0 344 606 + CUFF.1175_From_hi_0_2953648_0 350 606 + CUFF.1175_From_hi_0_2953648_0 355 606 + CUFF.1175_From_hi_0_2953648_0 357 606 - CUFF.1175_From_hi_0_2953648_0 360 606 + CUFF.1175_From_hi_0_2953648_0 363 601 + CUFF.1175_From_hi_0_2953648_0 421 606 - CUFF.1175_From_hi_0_2953648_0 430 601 + CUFF.1175_From_hi_0_2953648_0 436 601 + CUFF.1175_From_hi_0_2953648_0 442 606 + CUFF.1175_From_hi_0_2953648_0 451 601 + CUFF.1175_From_hi_0_2953648_0 460 606 + CUFF.1175_From_hi_0_2953648_0 466 601 + CUFF.1175_From_hi_0_2953648_0 466 615 - CUFF.1175_From_hi_0_2953648_0 476 606 - CUFF.1175_From_hi_0_2953648_0 480 606 + CUFF.1175_From_hi_0_2953648_0 483 606 + CUFF.1641_From_zu_0_3291057_0 150 241 + CUFF.1641_From_zu_0_3291057_0 154 225 - CUFF.1641_From_zu_0_3291057_0 154 241 - CUFF.1641_From_zu_0_3291057_0 157 241 + CUFF.1641_From_zu_0_3291057_0 165 219 + CUFF.1641_From_zu_0_3291057_0 171 224 + CUFF.1641_From_zu_0_3291057_0 174 241 + CUFF.1641_From_zu_0_3291057_0 180 241 + CUFF.1069_From_hi_0_2916184_0 199 356 + CUFF.1069_From_hi_0_2916184_0 204 364 + CUFF.1069_From_hi_0_2916184_0 208 356 + CUFF.1069_From_hi_0_2916184_0 212 356 + CUFF.1069_From_hi_0_2916184_0 219 356 + CUFF.1443_From_wil_2_3052273_0 93 204 + CUFF.1443_From_wil_2_3052273_0 96 199 - CUFF.1443_From_wil_2_3052273_0 96 204 - CUFF.1443_From_wil_2_3052273_0 100 204 + CUFF.1443_From_wil_2_3052273_0 104 199 - CUFF.1443_From_wil_2_3052273_0 104 204 - CUFF.1443_From_wil_2_3052273_0 108 186 - CUFF.1443_From_wil_2_3052273_0 113 204 + CUFF.1443_From_wil_2_3052273_0 115 199 - CUFF.1443_From_wil_2_3052273_0 115 204 - CUFF.1443_From_wil_2_3052273_0 119 204 + CUFF.1267_From_no_0_3128142_0 107 193 - CUFF.1267_From_no_0_3128142_0 107 200 + CUFF.1267_From_no_0_3128142_0 116 198 - CUFF.1267_From_no_0_3128142_0 116 201 - CUFF.1267_From_no_0_3128142_0 120 193 - CUFF.1267_From_no_0_3128142_0 120 200 + CUFF.1267_From_no_0_3128142_0 135 193 - CUFF.1267_From_no_0_3128142_0 135 200 + CUFF.961_From_ct_1_3302721_0 157 334 + CUFF.961_From_ct_1_3302721_0 157 343 - CUFF.961_From_ct_1_3302721_0 165 334 + CUFF.961_From_ct_1_3302721_0 165 343 - CUFF.1621_From_zu_0_3275363_0 364 464 + CUFF.1621_From_zu_0_3275363_0 364 470 - CUFF.1621_From_zu_0_3275363_0 368 480 - CUFF.1621_From_zu_0_3275363_0 378 480 + CUFF.1621_From_zu_0_3275363_0 380 464 + CUFF.1621_From_zu_0_3275363_0 384 480 + CUFF.1621_From_zu_0_3275363_0 387 480 - CUFF.1583_From_wu_0_2829124_0 171 235 - CUFF.1583_From_wu_0_2829124_0 174 235 + CUFF.1583_From_wu_0_2829124_0 177 235 - CUFF.1175_From_hi_0_2953648_0 337 612 + CUFF.1175_From_hi_0_2953648_0 344 612 + CUFF.1175_From_hi_0_2953648_0 350 612 + CUFF.1175_From_hi_0_2953648_0 355 612 + CUFF.1175_From_hi_0_2953648_0 357 612 - CUFF.1175_From_hi_0_2953648_0 360 612 + CUFF.1175_From_hi_0_2953648_0 363 622 + CUFF.1175_From_hi_0_2953648_0 421 612 - CUFF.1175_From_hi_0_2953648_0 430 622 + CUFF.1175_From_hi_0_2953648_0 436 622 + CUFF.1175_From_hi_0_2953648_0 442 612 + CUFF.1175_From_hi_0_2953648_0 451 622 + CUFF.1175_From_hi_0_2953648_0 460 612 + CUFF.1175_From_hi_0_2953648_0 466 622 + CUFF.1175_From_hi_0_2953648_0 466 625 - CUFF.1175_From_hi_0_2953648_0 476 612 - CUFF.1175_From_hi_0_2953648_0 480 612 + CUFF.1175_From_hi_0_2953648_0 483 612 + CUFF.1641_From_zu_0_3291057_0 154 230 - CUFF.1641_From_zu_0_3291057_0 165 224 + CUFF.1641_From_zu_0_3291057_0 171 227 + CUFF.1069_From_hi_0_2916184_0 204 366 + CUFF.1443_From_wil_2_3052273_0 108 196 - CUFF.1267_From_no_0_3128142_0 107 204 - CUFF.1267_From_no_0_3128142_0 107 213 + CUFF.1267_From_no_0_3128142_0 116 207 - CUFF.1267_From_no_0_3128142_0 120 204 - CUFF.1267_From_no_0_3128142_0 120 213 + CUFF.1267_From_no_0_3128142_0 135 204 - CUFF.1267_From_no_0_3128142_0 135 213 + CUFF.961_From_ct_1_3302721_0 157 340 + CUFF.961_From_ct_1_3302721_0 165 340 + CUFF.1621_From_zu_0_3275363_0 364 475 - CUFF.1175_From_hi_0_2953648_0 337 617 + CUFF.1175_From_hi_0_2953648_0 344 617 + CUFF.1175_From_hi_0_2953648_0 350 617 + CUFF.1175_From_hi_0_2953648_0 355 617 + CUFF.1175_From_hi_0_2953648_0 357 617 - CUFF.1175_From_hi_0_2953648_0 360 617 + CUFF.1175_From_hi_0_2953648_0 421 617 - CUFF.1175_From_hi_0_2953648_0 442 617 + CUFF.1175_From_hi_0_2953648_0 460 617 + CUFF.1175_From_hi_0_2953648_0 466 628 - CUFF.1175_From_hi_0_2953648_0 476 617 - CUFF.1175_From_hi_0_2953648_0 480 617 + CUFF.1175_From_hi_0_2953648_0 483 617 + CUFF.1641_From_zu_0_3291057_0 154 234 - CUFF.1641_From_zu_0_3291057_0 165 227 + CUFF.1641_From_zu_0_3291057_0 171 229 + CUFF.1443_From_wil_2_3052273_0 108 209 - CUFF.1267_From_no_0_3128142_0 107 215 - CUFF.1267_From_no_0_3128142_0 107 218 + CUFF.1267_From_no_0_3128142_0 116 221 - CUFF.1267_From_no_0_3128142_0 120 215 - CUFF.1267_From_no_0_3128142_0 120 218 + CUFF.1267_From_no_0_3128142_0 135 215 - CUFF.1267_From_no_0_3128142_0 135 218 + CUFF.1641_From_zu_0_3291057_0 154 236 - CUFF.1641_From_zu_0_3291057_0 165 229 + CUFF.1267_From_no_0_3128142_0 107 220 + CUFF.1267_From_no_0_3128142_0 120 220 + CUFF.1267_From_no_0_3128142_0 135 220 + -- done -- -- cov -- CUFF.1175_From_hi_0_2953648_0 553 606 - CUFF.1053_From_kn_0_3819922_1 29 102 + CUFF.1053_From_kn_0_3819922_1 31 102 + CUFF.1521_From_ws_0_3344070_0 215 377 + CUFF.1369_From_sf_2_2700286_0 2238 2460 + CUFF.1369_From_sf_2_2700286_0 2246 2460 + CUFF.1369_From_sf_2_2700286_0 2255 2460 + CUFF.1369_From_sf_2_2700286_0 2264 2460 + CUFF.1619_From_zu_0_3280025_0 589 677 + CUFF.1053_From_kn_0_3819922_1 29 360 + CUFF.1053_From_kn_0_3819922_1 31 360 + CUFF.1369_From_sf_2_2700286_0 2270 2463 - CUFF.1369_From_sf_2_2700286_0 2273 2463 - CUFF.1175_From_hi_0_2953648_0 476 617 - CUFF.1053_From_kn_0_3819922_1 29 362 + CUFF.1053_From_kn_0_3819922_1 31 362 + CUFF.1369_From_sf_2_2700286_0 1888 2460 + CUFF.1053_From_kn_0_3819922_1 29 365 + CUFF.1053_From_kn_0_3819922_1 31 365 + CUFF.1053_From_kn_0_3819922_1 29 377 + CUFF.1053_From_kn_0_3819922_1 31 377 + CUFF.1645_From_wu_0_2816600_0 386 752 + CUFF.1455_From_wil_2_3068737_0 209 722 - CUFF.1369_From_sf_2_2700286_0 1585 2460 + CUFF.1369_From_sf_2_2700286_0 1589 2460 + CUFF.1369_From_sf_2_2700286_0 1600 2460 + CUFF.1369_From_sf_2_2700286_0 2253 2463 - CUFF.1053_From_kn_0_3819922_1 29 380 + CUFF.1053_From_kn_0_3819922_1 31 380 + CUFF.1175_From_hi_0_2953648_0 357 617 - CUFF.1053_From_kn_0_3819922_1 29 542 + CUFF.1053_From_kn_0_3819922_1 31 542 + CUFF.1053_From_kn_0_3819922_1 153 549 + CUFF.1053_From_kn_0_3819922_1 29 549 + CUFF.1053_From_kn_0_3819922_1 31 549 + CUFF.1267_From_no_0_3128142_0 745 1688 + CUFF.1053_From_kn_0_3819922_1 29 552 + CUFF.1053_From_kn_0_3819922_1 31 552 + CUFF.1369_From_sf_2_2700286_0 1360 2460 + CUFF.1369_From_sf_2_2700286_0 1364 2460 + CUFF.1369_From_sf_2_2700286_0 1383 2460 + CUFF.1369_From_sf_2_2700286_0 1396 2460 + CUFF.1053_From_kn_0_3819922_1 29 561 + CUFF.1053_From_kn_0_3819922_1 31 561 + CUFF.1369_From_sf_2_2700286_0 1691 2463 - CUFF.1369_From_sf_2_2700286_0 1693 2463 - CUFF.1369_From_sf_2_2700286_0 1715 2463 - CUFF.1369_From_sf_2_2700286_0 1726 2463 - CUFF.1369_From_sf_2_2700286_0 1845 2463 - CUFF.1369_From_sf_2_2700286_0 1852 2463 - CUFF.1369_From_sf_2_2700286_0 1863 2463 - CUFF.1369_From_sf_2_2700286_0 1866 2463 - CUFF.1369_From_sf_2_2700286_0 1876 2463 - CUFF.1369_From_sf_2_2700286_0 1878 2463 - CUFF.1369_From_sf_2_2700286_0 1890 2463 - CUFF.1053_From_kn_0_3819922_1 29 571 + CUFF.1053_From_kn_0_3819922_1 31 571 + CUFF.1053_From_kn_0_3819922_1 29 574 + CUFF.1053_From_kn_0_3819922_1 31 574 + CUFF.1369_From_sf_2_2700286_0 1564 2463 - CUFF.1369_From_sf_2_2700286_0 1587 2463 - CUFF.1369_From_sf_2_2700286_0 1593 2463 - CUFF.1053_From_kn_0_3819922_1 29 1080 + CUFF.1053_From_kn_0_3819922_1 31 1080 + CUFF.1369_From_sf_2_2700286_0 1002 2460 + CUFF.1053_From_kn_0_3819922_1 29 1103 + CUFF.1053_From_kn_0_3819922_1 31 1103 + CUFF.1053_From_kn_0_3819922_1 29 1121 + CUFF.1053_From_kn_0_3819922_1 31 1121 + CUFF.1369_From_sf_2_2700286_0 580 2460 + CUFF.1053_From_kn_0_3819922_1 29 1268 + CUFF.1053_From_kn_0_3819922_1 31 1268 + CUFF.1053_From_kn_0_3819922_1 29 1270 + CUFF.1053_From_kn_0_3819922_1 31 1270 + CUFF.1053_From_kn_0_3819922_1 29 1280 + CUFF.1053_From_kn_0_3819922_1 31 1280 + CUFF.1053_From_kn_0_3819922_1 29 1288 + CUFF.1053_From_kn_0_3819922_1 31 1288 + CUFF.1053_From_kn_0_3819922_1 200 1397 + CUFF.1053_From_kn_0_3819922_1 29 1397 + CUFF.1053_From_kn_0_3819922_1 31 1397 + CUFF.1053_From_kn_0_3819922_1 29 1440 + CUFF.1053_From_kn_0_3819922_1 31 1440 + CUFF.1369_From_sf_2_2700286_0 170 2460 + CUFF.1369_From_sf_2_2700286_0 189 2460 + CUFF.1369_From_sf_2_2700286_0 990 2463 - CUFF.1053_From_kn_0_3819922_1 29 1698 + CUFF.1053_From_kn_0_3819922_1 31 1698 + CUFF.1053_From_kn_0_3819922_1 29 1704 + CUFF.1053_From_kn_0_3819922_1 31 1704 + CUFF.1369_From_sf_2_2700286_0 679 2463 - CUFF.1369_From_sf_2_2700286_0 712 2463 - CUFF.1053_From_kn_0_3819922_1 29 1708 + CUFF.1053_From_kn_0_3819922_1 31 1708 + CUFF.1053_From_kn_0_3819922_1 29 1712 + CUFF.1053_From_kn_0_3819922_1 31 1712 + CUFF.1053_From_kn_0_3819922_1 29 1717 + CUFF.1053_From_kn_0_3819922_1 31 1717 + CUFF.1369_From_sf_2_2700286_0 578 2463 - CUFF.1369_From_sf_2_2700286_0 157 2463 - CUFF.1369_From_sf_2_2700286_0 167 2463 - -- done -- -- buf -- -- done -- Reporting potential splice junctions...done Reported 244 total possible splices Reporting potential deletions... Reporting potential insertions...