segment_juncs v1.2.0 (1752) --------------------------- Loading reference sequences... Loading CUFF.1649_From_zu_0_3082201_0...done Loading CUFF.1231_From_oy_0_2965192_0...done Loading CUFF.1337_From_sf_2_2662232_0...done Loading CUFF.1509_From_wu_0_2616263_0...done Loading CUFF.1149_From_mt_0_4217716_0...done Loading CUFF.1275_From_po_0_3332479_0...done Loading CUFF.1615_From_zu_0_3118546_0...done Loading CUFF.1211_From_po_0_3269389_0...done Loading CUFF.1519_From_wu_0_2597064_0...done Loading CUFF.1335_From_sf_2_2524453_0...done Loading CUFF.1507_From_wu_0_2587993_0...done Loading CUFF.1155_From_no_0_2905273_0...done Loading CUFF.1271_From_rsch_4_4034850_0...done Loading CUFF.1209_From_po_0_3295404_0...done Loading CUFF.1523_From_wu_0_2638225_0...done Loading CUFF.867_From_bur_0_1863298_0...done Loading CUFF.1349_From_mt_0_4528444_1...done Loading CUFF.995_From_hi_0_2751582_0...done Loading CUFF.981_From_hi_0_2690171_0...done Loading CUFF.1027_From_kn_0_3558357_0...done Loading CUFF.963_From_edi_0_2744702_0...done Loading CUFF.1503_From_wu_0_2588697_0...done Loading CUFF.1093_From_mt_0_4130072_0...done Loading CUFF.1219_From_po_0_3319326_0...done Loading CUFF.1119_From_hi_0_2939638_0...done Loading CUFF.1019_From_edi_0_2859720_0...done Loading CUFF.1547_From_wu_0_2685428_0...done Loading CUFF.1353_From_tsu_0_3002533_0...done Loading CUFF.1569_From_zu_0_3035650_0...done Loading CUFF.1141_From_mt_0_4449890_0...done Loading CUFF.1529_From_wu_0_2655159_0...done Loading CUFF.1045_From_kn_0_3605300_0...done Loading CUFF.1531_From_ws_0_3340488_0...done Loading CUFF.1497_From_ws_0_3380934_0...done Loading CUFF.1575_From_wu_0_2831218_0...done Loading CUFF.1013_From_kn_0_3532396_0...done Loading CUFF.1095_From_mt_0_4131964_0...done Loading CUFF.1079_From_mt_0_4085357_0...done Loading CUFF.921_From_can_0_3233581_0...done Loading CUFF.869_From_bur_0_1873494_0...done Loading CUFF.1081_From_mt_0_4099484_0...done Loading CUFF.1505_From_wu_0_2607348_0...done Loading CUFF.1427_From_ws_0_3077529_0...done Loading CUFF.1515_From_wu_0_2648785_0...done Loading CUFF.1285_From_rsch_4_4085063_0...done Loading CUFF.1153_From_no_0_2923846_0...done Loading CUFF.1307_From_rsch_4_4277566_0...done Loading CUFF.1281_From_oy_0_3121110_0...done Loading CUFF.1301_From_rsch_4_4111713_0...done Loading CUFF.907_From_can_0_3122480_0...done Loading CUFF.1213_From_po_0_3316390_0...done Loading CUFF.1535_From_wu_0_2676799_0...done Loading CUFF.1003_From_hi_0_2790034_0...done Loading CUFF.1395_From_wil_2_2904915_0...done Loading CUFF.1631_From_zu_0_3277661_1...done Loading CUFF.1109_From_mt_0_4194856_0...done Loading CUFF.1207_From_po_0_3308932_0...done Loading CUFF.1397_From_tsu_0_3228017_0...done Loading CUFF.1459_From_ws_0_3182508_0...done Loading CUFF.1613_From_zu_0_3259399_1...done Loading CUFF.1008_From_kn_0_3525938_0...done Loading CUFF.1495_From_ws_0_3371988_0...done Loading CUFF.1017_From_kn_0_3566907_0...done Loading CUFF.1165_From_no_0_2959683_0...done Loading CUFF.1493_From_wil_2_3087183_0...done Loading CUFF.1573_From_zu_0_3065917_0...done Loading CUFF.1099_From_mt_0_4177596_0...done Loading CUFF.1253_From_po_0_3387411_0...done Loading CUFF.1293_From_rsch_4_4107621_0...done Loading CUFF.1591_From_zu_0_3092045_0...done Loading CUFF.1313_From_po_0_3573778_0...done Loading CUFF.1117_From_hi_0_2939638_0...done Loading CUFF.895_From_can_0_3069992_0...done Loading CUFF.1069_From_hi_0_2916184_0...done Loading CUFF.1637_From_zu_0_3277661_0...done Loading CUFF.1163_From_no_0_2951521_0...done Loading CUFF.1611_From_zu_0_3255503_0...done Loading CUFF.1367_From_tsu_0_3135135_0...done Loading CUFF.1453_From_ws_0_3185408_0...done Loading CUFF.1599_From_zu_0_3200689_0...done Loading CUFF.1315_From_rsch_4_4277566_0...done Loading CUFF.1229_From_po_0_3339041_0...done Loading CUFF.1385_From_sf_2_2653966_0...done Loading CUFF.1617_From_zu_0_3278243_0...done Loading CUFF.1521_From_ws_0_3344070_0...done Loading CUFF.1061_From_ler_0_4016532_0...done Loading CUFF.927_From_ct_1_3108889_0...done Loading CUFF.901_From_can_0_3094988_0...done Loading CUFF.1625_From_zu_0_3243571_0...done Loading CUFF.1481_From_ws_0_3349444_1...done Loading CUFF.1629_From_zu_0_3287917_0...done Loading CUFF.1139_From_ler_0_4211779_1...done Loading CUFF.1287_From_rsch_4_4099439_0...done Loading CUFF.1101_From_mt_0_4188374_0...done Loading CUFF.953_From_edi_0_2759591_0...done Loading CUFF.973_From_edi_0_2871668_0...done Loading CUFF.1597_From_zu_0_3181459_0...done Loading CUFF.1465_From_ws_0_3190963_0...done Loading CUFF.1233_From_po_0_3365309_0...done Loading CUFF.991_From_edi_0_2891968_0...done Loading CUFF.1603_From_zu_0_3242889_0...done Loading CUFF.937_From_can_0_3239881_0...done Loading CUFF.993_From_hi_0_2787534_0...done Loading CUFF.1049_From_ler_0_4002120_0...done Loading CUFF.929_From_can_0_3263637_0...done Loading CUFF.1157_From_no_0_2939843_0...done Loading CUFF.1055_From_ler_0_4004770_0...done Loading CUFF.1539_From_wu_0_2702886_0...done Loading CUFF.989_From_edi_0_2932438_0...done Loading CUFF.1011_From_edi_0_2918156_0...done Loading CUFF.1593_From_zu_0_3112556_0...done Loading CUFF.1113_From_mt_0_4206392_0...done Loading CUFF.1431_From_ws_0_3170660_0...done Loading CUFF.1443_From_wil_2_3052273_0...done Loading CUFF.1533_From_wu_0_2683442_0...done Loading CUFF.881_From_bur_0_1969548_0...done Loading CUFF.1401_From_wil_2_3050523_0...done Loading CUFF.1527_From_wu_0_2675967_0...done Loading CUFF.1259_From_po_0_3402348_0...done Loading CUFF.1379_From_sf_2_2656790_0...done Loading CUFF.955_From_edi_0_2766531_0...done Loading CUFF.1295_From_rsch_4_4118037_0...done Loading CUFF.1007_From_edi_0_2888586_0...done Loading CUFF.935_From_bur_0_2020452_0...done Loading CUFF.1491_From_ws_0_3373966_0...done Loading CUFF.1563_From_ws_0_3381390_0...done Loading CUFF.1133_From_mt_0_4399784_0...done Loading CUFF.1251_From_po_0_3400198_0...done Loading CUFF.1121_From_mt_0_4226690_0...done Loading CUFF.1411_From_rsch_4_4266550_0...done Loading CUFF.1489_From_ws_0_3372620_0...done Loading CUFF.1463_From_ws_0_3190679_0...done Loading CUFF.1087_From_ler_0_4211779_0...done Loading CUFF.1559_From_wu_0_2824162_0...done Loading CUFF.983_From_ct_1_3241157_0...done Loading CUFF.1175_From_hi_0_2953648_0...done Loading CUFF.967_From_edi_0_2887084_2...done Loading CUFF.1455_From_wil_2_3068737_0...done Loading CUFF.1645_From_wu_0_2816600_0...done Loading CUFF.1473_From_ws_0_3293243_0...done Loading CUFF.1399_From_wil_2_2978735_0...done Loading CUFF.969_From_edi_0_2888616_0...done Loading CUFF.1305_From_rsch_4_4263688_0...done Loading CUFF.1373_From_tsu_0_3208747_0...done Loading CUFF.985_From_edi_0_2921730_0...done Loading CUFF.913_From_can_0_3217045_0...done Loading CUFF.1433_From_wil_2_3079625_0...done Loading CUFF.961_From_ct_1_3302721_0...done Loading CUFF.1601_From_zu_0_3250197_1...done Loading CUFF.1173_From_no_0_3113578_1...done Loading CUFF.1187_From_oy_0_3098144_0...done Loading CUFF.1351_From_tsu_0_3175121_0...done Loading CUFF.1543_From_ws_0_3373604_0...done Loading CUFF.1409_From_wil_2_3066229_0...done Loading CUFF.911_From_can_0_3230893_0...done Loading CUFF.1639_From_zu_0_3291057_0...done Loading CUFF.1075_From_edi_0_2906444_0...done Loading CUFF.1471_From_tsu_0_3212935_0...done Loading CUFF.1413_From_sf_2_2687786_0...done Loading CUFF.1167_From_no_0_3096552_0...done Loading CUFF.875_From_bur_0_1999718_0...done Loading CUFF.1475_From_ws_0_3313321_0...done Loading CUFF.1483_From_ws_0_3364198_0...done Loading CUFF.1565_From_zu_0_3075813_0...done Loading CUFF.1363_From_sf_2_2671632_0...done Loading CUFF.1197_From_oy_0_3103794_0...done Loading CUFF.1311_From_rsch_4_4275442_0...done Loading CUFF.1343_From_sf_2_2689374_0...done Loading CUFF.1339_From_sf_2_2689374_0...done Loading CUFF.1359_From_tsu_0_3148935_0...done Loading CUFF.1223_From_po_0_3340213_0...done Loading CUFF.1329_From_sf_2_2642906_0...done Loading CUFF.1407_From_wil_2_3063473_0...done Loading CUFF.1641_From_zu_0_3291057_0...done Loading CUFF.1035_From_kn_0_3751597_0...done Loading CUFF.1169_From_no_0_3101262_0...done Loading CUFF.1423_From_wil_2_3072219_0...done Loading CUFF.1361_From_tsu_0_3175121_0...done Loading CUFF.1325_From_sf_2_2626132_0...done Loading CUFF.1261_From_po_0_3599571_0...done Loading CUFF.1375_From_tsu_0_3211741_0...done Loading CUFF.1417_From_wil_2_3078633_1...done Loading CUFF.1583_From_wu_0_2829124_0...done Loading CUFF.1267_From_no_0_3128142_0...done Loading CUFF.1309_From_rsch_4_4307314_0...done Loading CUFF.1499_From_ws_0_3382714_0...done Loading CUFF.1177_From_no_0_3116640_0...done Loading CUFF.1605_From_zu_0_3257369_0...done Loading CUFF.865_From_bur_0_1967596_0...done Loading CUFF.949_From_can_0_3218459_0...done Loading CUFF.1419_From_sf_2_2701328_0...done Loading CUFF.1345_From_sf_2_2689374_0...done Loading CUFF.1619_From_zu_0_3280025_0...done Loading CUFF.1065_From_ler_0_4153595_0...done Loading CUFF.1595_From_zu_0_3238769_0...done Loading CUFF.1111_From_ler_0_4165287_0...done Loading CUFF.1215_From_oy_0_3162092_0...done Loading CUFF.975_From_edi_0_2902016_0...done Loading CUFF.1545_From_wu_0_2770362_0...done Loading CUFF.1089_From_ler_0_4224097_0...done Loading CUFF.943_From_ct_1_3247037_0...done Loading CUFF.1077_From_ler_0_4225073_0...done Loading CUFF.1607_From_zu_0_3255169_0...done Loading CUFF.1487_From_ws_0_3347582_0...done Loading CUFF.1643_From_wu_0_2816600_0...done Loading CUFF.1609_From_zu_0_3260873_0...done Loading CUFF.1189_From_oy_0_3115434_0...done Loading CUFF.1467_From_ws_0_3309675_0...done Loading CUFF.1553_From_wu_0_2806776_0...done Loading CUFF.1439_From_wil_2_3089541_0...done Loading CUFF.879_From_bur_0_2021834_0...done Loading CUFF.1265_From_po_0_3577252_0...done Loading CUFF.1073_From_ler_0_4209589_1...done Loading CUFF.1479_From_ws_0_3339092_0...done Loading CUFF.1451_From_wil_2_3077447_0...done Loading CUFF.1347_From_sf_2_2682779_0...done Loading CUFF.1635_From_zu_0_3263539_0...done Loading CUFF.1579_From_wu_0_2802868_0...done Loading CUFF.1365_From_tsu_0_3179519_0...done Loading CUFF.1513_From_ws_0_3381290_0...done Loading CUFF.915_From_can_0_3231205_0...done Loading CUFF.1383_From_tsu_0_3242833_1...done Loading CUFF.1415_From_wil_2_3082811_1...done Loading CUFF.1421_From_tsu_0_3215821_0...done Loading CUFF.919_From_can_0_3258779_0...done Loading CUFF.909_From_can_0_3223655_0...done Loading CUFF.1029_From_kn_0_3802200_0...done Loading CUFF.1393_From_tsu_0_3228555_0...done Loading CUFF.1437_From_wil_2_3088151_0...done Loading CUFF.1377_From_tsu_0_3215671_0...done Loading CUFF.1633_From_zu_0_3280213_0...done Loading CUFF.1333_From_sf_2_2666154_1...done Loading CUFF.1405_From_wil_2_3052951_0...done Loading CUFF.971_From_edi_0_2891226_0...done Loading CUFF.1623_From_zu_0_3289907_1...done Loading CUFF.1557_From_wu_0_2824308_0...done Loading CUFF.1015_From_hi_0_2966608_0...done Loading CUFF.951_From_ct_1_3280175_0...done Loading CUFF.1159_From_no_0_3088052_0...done Loading CUFF.1621_From_zu_0_3275363_0...done Loading CUFF.871_From_bur_0_2012810_0...done Loading CUFF.889_From_bur_0_2032354_0...done Loading CUFF.1647_From_zu_0_3289907_1...done Loading CUFF.1289_From_po_0_3606391_0...done Loading CUFF.1053_From_kn_0_3819922_1...done Loading CUFF.877_From_bur_0_2022518_0...done Loading CUFF.1371_From_tsu_0_3211333_0...done Loading CUFF.1279_From_po_0_3599571_0...done Loading CUFF.1577_From_wu_0_2832848_0...done Loading CUFF.1033_From_kn_0_3799876_0...done Loading CUFF.1561_From_wu_0_2827904_0...done Loading CUFF.1041_From_kn_0_3824150_0...done Loading CUFF.1369_From_sf_2_2700286_0...done Loading CUFF.1627_From_zu_0_3262887_0...done Loading CUFF.899_From_bur_0_2022518_0...done Loading CUFF.941_From_bur_0_2025286_0...done Loading CUFF.1585_From_wu_0_2837848_0...done Loading CUFF.1269_From_po_0_3606391_1...done Loading CUFF.1381_From_tsu_0_3240885_0...done Loading CUFF.1181_From_no_0_3120392_0...done Loading CUFF.1501_From_ws_0_3365892_0...done Loading CUFF.1425_From_wil_2_3091415_1...done Loading CUFF.1537_From_ws_0_3382500_0...done Loading CUFF.873_From_bur_0_2020452_0...done Loading CUFF.1277_From_po_0_3599571_0...done Loading CUFF.1447_From_wil_2_3091415_1...done Loading CUFF.897_From_bur_0_2022518_0...done Loading CUFF.997_From_edi_0_2934714_0...done Loading CUFF.977_From_edi_0_2934714_0...done Loading CUFF.979_From_edi_0_2934714_0...done Loading CUFF.1485_From_ws_0_3371988_0...done Loading left segment hits... Microaligned 1266 segments done. Found 181 potential split-segment junctions Found 7 potential small deletions Found 5 potential small insertions Indexing extensions in ./sf_2.TOnovel/tmp/left_kept_reads_seg1_missing.fq Indexing extensions in ./sf_2.TOnovel/tmp/left_kept_reads_seg2_missing.fq Indexing extensions in ./sf_2.TOnovel/tmp/left_kept_reads_seg3_missing.fq Total extensions: 30947074 Total extensions: 30947074 Total extensions: 30947074 Looking for junctions by island end pairings Adding hits from segment file 0 to coverage map Adding hits from segment file 1 to coverage map Adding hits from segment file 2 to coverage map Map covers 16248 bases Map covers 16029 bases in sufficiently long segments Map contains 218 good islands 6792 are left looking bases 5000 are right looking bases Collecting potential splice sites in islands reporting synthetic splice junctions... Examining donor-acceptor pairings in CUFF.951_From_ct_1_3280175_0 Examining donor-acceptor pairings in CUFF.1561_From_wu_0_2827904_0 Examining donor-acceptor pairings in CUFF.1329_From_sf_2_2642906_0 Examining donor-acceptor pairings in CUFF.927_From_ct_1_3108889_0 Examining donor-acceptor pairings in CUFF.1419_From_sf_2_2701328_0 Examining donor-acceptor pairings in CUFF.961_From_ct_1_3302721_0 Examining donor-acceptor pairings in CUFF.1597_From_zu_0_3181459_0 Examining donor-acceptor pairings in CUFF.1629_From_zu_0_3287917_0 Examining donor-acceptor pairings in CUFF.1531_From_ws_0_3340488_0 Examining donor-acceptor pairings in CUFF.975_From_edi_0_2902016_0 Examining donor-acceptor pairings in CUFF.1505_From_wu_0_2607348_0 Examining donor-acceptor pairings in CUFF.1537_From_ws_0_3382500_0 Examining donor-acceptor pairings in CUFF.1521_From_ws_0_3344070_0 Examining donor-acceptor pairings in CUFF.1577_From_wu_0_2832848_0 Examining donor-acceptor pairings in CUFF.1621_From_zu_0_3275363_0 Examining donor-acceptor pairings in CUFF.949_From_can_0_3218459_0 Examining donor-acceptor pairings in CUFF.1073_From_ler_0_4209589_1 Examining donor-acceptor pairings in CUFF.1637_From_zu_0_3277661_0 Examining donor-acceptor pairings in CUFF.1117_From_hi_0_2939638_0 Examining donor-acceptor pairings in CUFF.1189_From_oy_0_3115434_0 Examining donor-acceptor pairings in CUFF.1269_From_po_0_3606391_1 Examining donor-acceptor pairings in CUFF.1271_From_rsch_4_4034850_0 Examining donor-acceptor pairings in CUFF.1437_From_wil_2_3088151_0 Examining donor-acceptor pairings in CUFF.869_From_bur_0_1873494_0 Examining donor-acceptor pairings in CUFF.1159_From_no_0_3088052_0 Examining donor-acceptor pairings in CUFF.1197_From_oy_0_3103794_0 Examining donor-acceptor pairings in CUFF.1385_From_sf_2_2653966_0 Examining donor-acceptor pairings in CUFF.1008_From_kn_0_3525938_0 Examining donor-acceptor pairings in CUFF.1089_From_ler_0_4224097_0 Examining donor-acceptor pairings in CUFF.1575_From_wu_0_2831218_0 Examining donor-acceptor pairings in CUFF.1379_From_sf_2_2656790_0 Examining donor-acceptor pairings in CUFF.955_From_edi_0_2766531_0 Examining donor-acceptor pairings in CUFF.1259_From_po_0_3402348_0 Examining donor-acceptor pairings in CUFF.1017_From_kn_0_3566907_0 Examining donor-acceptor pairings in CUFF.1583_From_wu_0_2829124_0 Examining donor-acceptor pairings in CUFF.1413_From_sf_2_2687786_0 Examining donor-acceptor pairings in CUFF.1109_From_mt_0_4194856_0 Examining donor-acceptor pairings in CUFF.1175_From_hi_0_2953648_0 Examining donor-acceptor pairings in CUFF.1359_From_tsu_0_3148935_0 Examining donor-acceptor pairings in CUFF.1515_From_wu_0_2648785_0 Examining donor-acceptor pairings in CUFF.1167_From_no_0_3096552_0 Examining donor-acceptor pairings in CUFF.1381_From_tsu_0_3240885_0 Examining donor-acceptor pairings in CUFF.1153_From_no_0_2923846_0 Examining donor-acceptor pairings in CUFF.919_From_can_0_3258779_0 Examining donor-acceptor pairings in CUFF.1641_From_zu_0_3291057_0 Examining donor-acceptor pairings in CUFF.1187_From_oy_0_3098144_0 Examining donor-acceptor pairings in CUFF.1425_From_wil_2_3091415_1 Examining donor-acceptor pairings in CUFF.1349_From_mt_0_4528444_1 Examining donor-acceptor pairings in CUFF.1395_From_wil_2_2904915_0 Examining donor-acceptor pairings in CUFF.1547_From_wu_0_2685428_0 Examining donor-acceptor pairings in CUFF.907_From_can_0_3122480_0 Examining donor-acceptor pairings in CUFF.1601_From_zu_0_3250197_1 Examining donor-acceptor pairings in CUFF.1559_From_wu_0_2824162_0 Examining donor-acceptor pairings in CUFF.1311_From_rsch_4_4275442_0 Examining donor-acceptor pairings in CUFF.1453_From_ws_0_3185408_0 Examining donor-acceptor pairings in CUFF.1163_From_no_0_2951521_0 Examining donor-acceptor pairings in CUFF.1553_From_wu_0_2806776_0 Examining donor-acceptor pairings in CUFF.1041_From_kn_0_3824150_0 Examining donor-acceptor pairings in CUFF.1309_From_rsch_4_4307314_0 Examining donor-acceptor pairings in CUFF.1635_From_zu_0_3263539_0 Examining donor-acceptor pairings in CUFF.1443_From_wil_2_3052273_0 Examining donor-acceptor pairings in CUFF.973_From_edi_0_2871668_0 Examining donor-acceptor pairings in CUFF.1049_From_ler_0_4002120_0 Examining donor-acceptor pairings in CUFF.943_From_ct_1_3247037_0 Examining donor-acceptor pairings in CUFF.1523_From_wu_0_2638225_0 Examining donor-acceptor pairings in CUFF.969_From_edi_0_2888616_0 Examining donor-acceptor pairings in CUFF.1619_From_zu_0_3280025_0 Examining donor-acceptor pairings in CUFF.1377_From_tsu_0_3215671_0 Examining donor-acceptor pairings in CUFF.1439_From_wil_2_3089541_0 Examining donor-acceptor pairings in CUFF.1543_From_ws_0_3373604_0 Examining donor-acceptor pairings in CUFF.1363_From_sf_2_2671632_0 Examining donor-acceptor pairings in CUFF.1333_From_sf_2_2666154_1 Examining donor-acceptor pairings in CUFF.1045_From_kn_0_3605300_0 Examining donor-acceptor pairings in CUFF.1431_From_ws_0_3170660_0 Examining donor-acceptor pairings in CUFF.1095_From_mt_0_4131964_0 Examining donor-acceptor pairings in CUFF.1421_From_tsu_0_3215821_0 Examining donor-acceptor pairings in CUFF.1401_From_wil_2_3050523_0 Examining donor-acceptor pairings in CUFF.1347_From_sf_2_2682779_0 Examining donor-acceptor pairings in CUFF.1563_From_ws_0_3381390_0 Examining donor-acceptor pairings in CUFF.1593_From_zu_0_3112556_0 Examining donor-acceptor pairings in CUFF.1267_From_no_0_3128142_0 Examining donor-acceptor pairings in CUFF.1139_From_ler_0_4211779_1 Examining donor-acceptor pairings in CUFF.1141_From_mt_0_4449890_0 Examining donor-acceptor pairings in CUFF.1607_From_zu_0_3255169_0 Found 8 potential island-end pairing junctions done Aligning 1266 microexon segments in 133 windows window 100 Checked 2532 segments against 133 windows for microexon junctions Found 3 potential microexon junctions -- microexon -- CUFF.949_From_can_0_3218459_0 88 169 + CUFF.949_From_can_0_3218459_0 93 169 + CUFF.1421_From_tsu_0_3215821_0 511 620 - -- done -- -- seg -- CUFF.1419_From_sf_2_2701328_0 179 456 + CUFF.1419_From_sf_2_2701328_0 185 456 + CUFF.1419_From_sf_2_2701328_0 187 458 + CUFF.1419_From_sf_2_2701328_0 188 444 - CUFF.1419_From_sf_2_2701328_0 188 450 - CUFF.1419_From_sf_2_2701328_0 188 456 - CUFF.1419_From_sf_2_2701328_0 196 433 - CUFF.1419_From_sf_2_2701328_0 196 447 - CUFF.1419_From_sf_2_2701328_0 196 453 - CUFF.1419_From_sf_2_2701328_0 196 458 + CUFF.1419_From_sf_2_2701328_0 198 444 - CUFF.1419_From_sf_2_2701328_0 198 450 - CUFF.1419_From_sf_2_2701328_0 198 456 - CUFF.1419_From_sf_2_2701328_0 200 444 - CUFF.1419_From_sf_2_2701328_0 200 450 - CUFF.1419_From_sf_2_2701328_0 200 456 - CUFF.1419_From_sf_2_2701328_0 203 433 - CUFF.1419_From_sf_2_2701328_0 203 447 - CUFF.1419_From_sf_2_2701328_0 203 453 - CUFF.1419_From_sf_2_2701328_0 203 458 + CUFF.1419_From_sf_2_2701328_0 205 433 - CUFF.1419_From_sf_2_2701328_0 205 447 - CUFF.1419_From_sf_2_2701328_0 205 453 - CUFF.1419_From_sf_2_2701328_0 205 458 + CUFF.1419_From_sf_2_2701328_0 213 433 - CUFF.1419_From_sf_2_2701328_0 213 453 - CUFF.1419_From_sf_2_2701328_0 213 458 + CUFF.1419_From_sf_2_2701328_0 216 444 + CUFF.949_From_can_0_3218459_0 79 162 - CUFF.949_From_can_0_3218459_0 79 169 + CUFF.949_From_can_0_3218459_0 81 171 - CUFF.949_From_can_0_3218459_0 86 147 + CUFF.949_From_can_0_3218459_0 86 171 + CUFF.949_From_can_0_3218459_0 88 145 - CUFF.949_From_can_0_3218459_0 88 162 - CUFF.949_From_can_0_3218459_0 88 169 + CUFF.949_From_can_0_3218459_0 93 153 - CUFF.949_From_can_0_3218459_0 93 162 - CUFF.949_From_can_0_3218459_0 93 169 + CUFF.949_From_can_0_3218459_0 97 169 + CUFF.949_From_can_0_3218459_0 101 171 + CUFF.949_From_can_0_3218459_0 106 171 + CUFF.949_From_can_0_3218459_0 111 169 + CUFF.949_From_can_0_3218459_0 112 171 - CUFF.949_From_can_0_3218459_0 569 775 - CUFF.949_From_can_0_3218459_0 569 791 + CUFF.949_From_can_0_3218459_0 571 775 - CUFF.949_From_can_0_3218459_0 571 791 + CUFF.949_From_can_0_3218459_0 577 797 - CUFF.949_From_can_0_3218459_0 580 797 - CUFF.949_From_can_0_3218459_0 588 791 + CUFF.949_From_can_0_3218459_0 596 797 - CUFF.1641_From_zu_0_3291057_0 141 241 + CUFF.1641_From_zu_0_3291057_0 146 241 + CUFF.1641_From_zu_0_3291057_0 150 241 + CUFF.1641_From_zu_0_3291057_0 154 230 - CUFF.1641_From_zu_0_3291057_0 154 241 - CUFF.1641_From_zu_0_3291057_0 157 241 + CUFF.1641_From_zu_0_3291057_0 165 227 + CUFF.1377_From_tsu_0_3215671_0 258 518 + CUFF.1377_From_tsu_0_3215671_0 263 515 - CUFF.1377_From_tsu_0_3215671_0 263 533 + CUFF.1377_From_tsu_0_3215671_0 263 546 - CUFF.1377_From_tsu_0_3215671_0 268 518 + CUFF.1377_From_tsu_0_3215671_0 273 518 - CUFF.1377_From_tsu_0_3215671_0 273 544 - CUFF.1377_From_tsu_0_3215671_0 275 515 - CUFF.1377_From_tsu_0_3215671_0 275 533 + CUFF.1377_From_tsu_0_3215671_0 275 546 - CUFF.1377_From_tsu_0_3215671_0 278 518 + CUFF.1543_From_ws_0_3373604_0 303 389 - CUFF.1543_From_ws_0_3373604_0 306 389 + CUFF.1543_From_ws_0_3373604_0 309 389 + CUFF.1543_From_ws_0_3373604_0 313 389 - CUFF.1543_From_ws_0_3373604_0 317 389 + CUFF.1543_From_ws_0_3373604_0 325 392 + CUFF.1543_From_ws_0_3373604_0 328 389 + CUFF.1543_From_ws_0_3373604_0 330 389 + CUFF.1419_From_sf_2_2701328_0 179 468 + CUFF.1419_From_sf_2_2701328_0 185 468 + CUFF.1419_From_sf_2_2701328_0 188 456 - CUFF.1419_From_sf_2_2701328_0 188 468 - CUFF.1419_From_sf_2_2701328_0 196 447 - CUFF.1419_From_sf_2_2701328_0 196 453 - CUFF.1419_From_sf_2_2701328_0 196 463 - CUFF.1419_From_sf_2_2701328_0 198 456 - CUFF.1419_From_sf_2_2701328_0 198 468 - CUFF.1419_From_sf_2_2701328_0 200 456 - CUFF.1419_From_sf_2_2701328_0 200 468 - CUFF.1419_From_sf_2_2701328_0 203 447 - CUFF.1419_From_sf_2_2701328_0 203 453 - CUFF.1419_From_sf_2_2701328_0 203 463 - CUFF.1419_From_sf_2_2701328_0 205 447 - CUFF.1419_From_sf_2_2701328_0 205 453 - CUFF.1419_From_sf_2_2701328_0 205 463 - CUFF.1419_From_sf_2_2701328_0 213 447 - CUFF.1419_From_sf_2_2701328_0 213 463 - CUFF.1419_From_sf_2_2701328_0 216 456 + CUFF.949_From_can_0_3218459_0 79 177 - CUFF.949_From_can_0_3218459_0 81 174 - CUFF.949_From_can_0_3218459_0 86 171 + CUFF.949_From_can_0_3218459_0 86 174 + CUFF.949_From_can_0_3218459_0 88 153 - CUFF.949_From_can_0_3218459_0 88 177 - CUFF.949_From_can_0_3218459_0 93 158 - CUFF.949_From_can_0_3218459_0 93 177 - CUFF.949_From_can_0_3218459_0 101 174 + CUFF.949_From_can_0_3218459_0 569 780 - CUFF.949_From_can_0_3218459_0 569 802 + CUFF.949_From_can_0_3218459_0 571 780 - CUFF.949_From_can_0_3218459_0 571 802 + CUFF.949_From_can_0_3218459_0 577 804 - CUFF.949_From_can_0_3218459_0 580 804 - CUFF.949_From_can_0_3218459_0 588 802 + CUFF.949_From_can_0_3218459_0 596 804 - CUFF.1641_From_zu_0_3291057_0 154 234 - CUFF.1641_From_zu_0_3291057_0 165 229 + CUFF.1377_From_tsu_0_3215671_0 258 526 + CUFF.1377_From_tsu_0_3215671_0 263 543 + CUFF.1377_From_tsu_0_3215671_0 268 526 + CUFF.1377_From_tsu_0_3215671_0 273 526 - CUFF.1377_From_tsu_0_3215671_0 275 543 + CUFF.1377_From_tsu_0_3215671_0 278 526 + CUFF.1543_From_ws_0_3373604_0 303 397 - CUFF.1543_From_ws_0_3373604_0 306 397 + CUFF.1543_From_ws_0_3373604_0 309 397 + CUFF.1543_From_ws_0_3373604_0 313 397 - CUFF.1543_From_ws_0_3373604_0 317 397 + CUFF.1543_From_ws_0_3373604_0 325 395 + CUFF.1543_From_ws_0_3373604_0 328 397 + CUFF.1543_From_ws_0_3373604_0 330 397 + CUFF.1419_From_sf_2_2701328_0 196 453 - CUFF.1419_From_sf_2_2701328_0 196 463 - CUFF.1419_From_sf_2_2701328_0 196 474 - CUFF.1419_From_sf_2_2701328_0 203 453 - CUFF.1419_From_sf_2_2701328_0 203 463 - CUFF.1419_From_sf_2_2701328_0 203 474 - CUFF.1419_From_sf_2_2701328_0 205 453 - CUFF.1419_From_sf_2_2701328_0 205 463 - CUFF.1419_From_sf_2_2701328_0 205 474 - CUFF.1419_From_sf_2_2701328_0 213 453 - CUFF.1419_From_sf_2_2701328_0 213 474 - CUFF.949_From_can_0_3218459_0 79 180 - CUFF.949_From_can_0_3218459_0 81 189 - CUFF.949_From_can_0_3218459_0 86 189 + CUFF.949_From_can_0_3218459_0 88 158 - CUFF.949_From_can_0_3218459_0 88 180 - CUFF.949_From_can_0_3218459_0 93 162 - CUFF.949_From_can_0_3218459_0 93 180 - CUFF.949_From_can_0_3218459_0 101 189 + CUFF.949_From_can_0_3218459_0 569 806 - CUFF.949_From_can_0_3218459_0 571 806 - CUFF.1641_From_zu_0_3291057_0 154 236 - CUFF.1641_From_zu_0_3291057_0 165 254 + CUFF.1377_From_tsu_0_3215671_0 258 528 + CUFF.1377_From_tsu_0_3215671_0 268 528 + CUFF.1377_From_tsu_0_3215671_0 273 528 - CUFF.1377_From_tsu_0_3215671_0 278 528 + CUFF.1543_From_ws_0_3373604_0 303 400 - CUFF.1543_From_ws_0_3373604_0 306 400 + CUFF.1543_From_ws_0_3373604_0 309 400 + CUFF.1543_From_ws_0_3373604_0 313 400 - CUFF.1543_From_ws_0_3373604_0 317 400 + CUFF.1543_From_ws_0_3373604_0 328 400 + CUFF.1543_From_ws_0_3373604_0 330 400 + CUFF.1419_From_sf_2_2701328_0 196 474 - CUFF.1419_From_sf_2_2701328_0 203 474 - CUFF.1419_From_sf_2_2701328_0 205 474 - CUFF.949_From_can_0_3218459_0 79 186 - CUFF.949_From_can_0_3218459_0 88 162 - CUFF.949_From_can_0_3218459_0 88 186 - CUFF.949_From_can_0_3218459_0 93 186 - CUFF.1641_From_zu_0_3291057_0 154 255 - CUFF.1641_From_zu_0_3291057_0 165 259 + CUFF.1377_From_tsu_0_3215671_0 258 535 + CUFF.1377_From_tsu_0_3215671_0 268 535 + CUFF.1377_From_tsu_0_3215671_0 273 535 - CUFF.1377_From_tsu_0_3215671_0 278 535 + CUFF.949_From_can_0_3218459_0 79 192 - CUFF.949_From_can_0_3218459_0 88 192 - CUFF.949_From_can_0_3218459_0 93 192 - -- done -- -- cov -- CUFF.1419_From_sf_2_2701328_0 196 458 + CUFF.973_From_edi_0_2871668_0 336 499 + CUFF.973_From_edi_0_2871668_0 375 499 + CUFF.1413_From_sf_2_2687786_0 1218 2114 - CUFF.1377_From_tsu_0_3215671_0 263 543 + CUFF.1377_From_tsu_0_3215671_0 273 535 - CUFF.1437_From_wil_2_3088151_0 371 860 - CUFF.1363_From_sf_2_2671632_0 117 553 + -- done -- -- buf -- -- done -- Reporting potential splice junctions...done Reported 165 total possible splices Reporting potential deletions... Reporting potential insertions...