segment_juncs v1.2.0 (1752) --------------------------- Loading reference sequences... Loading CUFF.1649_From_zu_0_3082201_0...done Loading CUFF.1231_From_oy_0_2965192_0...done Loading CUFF.1337_From_sf_2_2662232_0...done Loading CUFF.1509_From_wu_0_2616263_0...done Loading CUFF.1149_From_mt_0_4217716_0...done Loading CUFF.1275_From_po_0_3332479_0...done Loading CUFF.1615_From_zu_0_3118546_0...done Loading CUFF.1211_From_po_0_3269389_0...done Loading CUFF.1519_From_wu_0_2597064_0...done Loading CUFF.1335_From_sf_2_2524453_0...done Loading CUFF.1507_From_wu_0_2587993_0...done Loading CUFF.1155_From_no_0_2905273_0...done Loading CUFF.1271_From_rsch_4_4034850_0...done Loading CUFF.1209_From_po_0_3295404_0...done Loading CUFF.1523_From_wu_0_2638225_0...done Loading CUFF.867_From_bur_0_1863298_0...done Loading CUFF.1349_From_mt_0_4528444_1...done Loading CUFF.995_From_hi_0_2751582_0...done Loading CUFF.981_From_hi_0_2690171_0...done Loading CUFF.1027_From_kn_0_3558357_0...done Loading CUFF.963_From_edi_0_2744702_0...done Loading CUFF.1503_From_wu_0_2588697_0...done Loading CUFF.1093_From_mt_0_4130072_0...done Loading CUFF.1219_From_po_0_3319326_0...done Loading CUFF.1119_From_hi_0_2939638_0...done Loading CUFF.1019_From_edi_0_2859720_0...done Loading CUFF.1547_From_wu_0_2685428_0...done Loading CUFF.1353_From_tsu_0_3002533_0...done Loading CUFF.1569_From_zu_0_3035650_0...done Loading CUFF.1141_From_mt_0_4449890_0...done Loading CUFF.1529_From_wu_0_2655159_0...done Loading CUFF.1045_From_kn_0_3605300_0...done Loading CUFF.1531_From_ws_0_3340488_0...done Loading CUFF.1497_From_ws_0_3380934_0...done Loading CUFF.1575_From_wu_0_2831218_0...done Loading CUFF.1013_From_kn_0_3532396_0...done Loading CUFF.1095_From_mt_0_4131964_0...done Loading CUFF.1079_From_mt_0_4085357_0...done Loading CUFF.921_From_can_0_3233581_0...done Loading CUFF.869_From_bur_0_1873494_0...done Loading CUFF.1081_From_mt_0_4099484_0...done Loading CUFF.1505_From_wu_0_2607348_0...done Loading CUFF.1427_From_ws_0_3077529_0...done Loading CUFF.1515_From_wu_0_2648785_0...done Loading CUFF.1285_From_rsch_4_4085063_0...done Loading CUFF.1153_From_no_0_2923846_0...done Loading CUFF.1307_From_rsch_4_4277566_0...done Loading CUFF.1281_From_oy_0_3121110_0...done Loading CUFF.1301_From_rsch_4_4111713_0...done Loading CUFF.907_From_can_0_3122480_0...done Loading CUFF.1213_From_po_0_3316390_0...done Loading CUFF.1535_From_wu_0_2676799_0...done Loading CUFF.1003_From_hi_0_2790034_0...done Loading CUFF.1395_From_wil_2_2904915_0...done Loading CUFF.1631_From_zu_0_3277661_1...done Loading CUFF.1109_From_mt_0_4194856_0...done Loading CUFF.1207_From_po_0_3308932_0...done Loading CUFF.1397_From_tsu_0_3228017_0...done Loading CUFF.1459_From_ws_0_3182508_0...done Loading CUFF.1613_From_zu_0_3259399_1...done Loading CUFF.1008_From_kn_0_3525938_0...done Loading CUFF.1495_From_ws_0_3371988_0...done Loading CUFF.1017_From_kn_0_3566907_0...done Loading CUFF.1165_From_no_0_2959683_0...done Loading CUFF.1493_From_wil_2_3087183_0...done Loading CUFF.1573_From_zu_0_3065917_0...done Loading CUFF.1099_From_mt_0_4177596_0...done Loading CUFF.1253_From_po_0_3387411_0...done Loading CUFF.1293_From_rsch_4_4107621_0...done Loading CUFF.1591_From_zu_0_3092045_0...done Loading CUFF.1313_From_po_0_3573778_0...done Loading CUFF.1117_From_hi_0_2939638_0...done Loading CUFF.895_From_can_0_3069992_0...done Loading CUFF.1069_From_hi_0_2916184_0...done Loading CUFF.1637_From_zu_0_3277661_0...done Loading CUFF.1163_From_no_0_2951521_0...done Loading CUFF.1611_From_zu_0_3255503_0...done Loading CUFF.1367_From_tsu_0_3135135_0...done Loading CUFF.1453_From_ws_0_3185408_0...done Loading CUFF.1599_From_zu_0_3200689_0...done Loading CUFF.1315_From_rsch_4_4277566_0...done Loading CUFF.1229_From_po_0_3339041_0...done Loading CUFF.1385_From_sf_2_2653966_0...done Loading CUFF.1617_From_zu_0_3278243_0...done Loading CUFF.1521_From_ws_0_3344070_0...done Loading CUFF.1061_From_ler_0_4016532_0...done Loading CUFF.927_From_ct_1_3108889_0...done Loading CUFF.901_From_can_0_3094988_0...done Loading CUFF.1625_From_zu_0_3243571_0...done Loading CUFF.1481_From_ws_0_3349444_1...done Loading CUFF.1629_From_zu_0_3287917_0...done Loading CUFF.1139_From_ler_0_4211779_1...done Loading CUFF.1287_From_rsch_4_4099439_0...done Loading CUFF.1101_From_mt_0_4188374_0...done Loading CUFF.953_From_edi_0_2759591_0...done Loading CUFF.973_From_edi_0_2871668_0...done Loading CUFF.1597_From_zu_0_3181459_0...done Loading CUFF.1465_From_ws_0_3190963_0...done Loading CUFF.1233_From_po_0_3365309_0...done Loading CUFF.991_From_edi_0_2891968_0...done Loading CUFF.1603_From_zu_0_3242889_0...done Loading CUFF.937_From_can_0_3239881_0...done Loading CUFF.993_From_hi_0_2787534_0...done Loading CUFF.1049_From_ler_0_4002120_0...done Loading CUFF.929_From_can_0_3263637_0...done Loading CUFF.1157_From_no_0_2939843_0...done Loading CUFF.1055_From_ler_0_4004770_0...done Loading CUFF.1539_From_wu_0_2702886_0...done Loading CUFF.989_From_edi_0_2932438_0...done Loading CUFF.1011_From_edi_0_2918156_0...done Loading CUFF.1593_From_zu_0_3112556_0...done Loading CUFF.1113_From_mt_0_4206392_0...done Loading CUFF.1431_From_ws_0_3170660_0...done Loading CUFF.1443_From_wil_2_3052273_0...done Loading CUFF.1533_From_wu_0_2683442_0...done Loading CUFF.881_From_bur_0_1969548_0...done Loading CUFF.1401_From_wil_2_3050523_0...done Loading CUFF.1527_From_wu_0_2675967_0...done Loading CUFF.1259_From_po_0_3402348_0...done Loading CUFF.1379_From_sf_2_2656790_0...done Loading CUFF.955_From_edi_0_2766531_0...done Loading CUFF.1295_From_rsch_4_4118037_0...done Loading CUFF.1007_From_edi_0_2888586_0...done Loading CUFF.935_From_bur_0_2020452_0...done Loading CUFF.1491_From_ws_0_3373966_0...done Loading CUFF.1563_From_ws_0_3381390_0...done Loading CUFF.1133_From_mt_0_4399784_0...done Loading CUFF.1251_From_po_0_3400198_0...done Loading CUFF.1121_From_mt_0_4226690_0...done Loading CUFF.1411_From_rsch_4_4266550_0...done Loading CUFF.1489_From_ws_0_3372620_0...done Loading CUFF.1463_From_ws_0_3190679_0...done Loading CUFF.1087_From_ler_0_4211779_0...done Loading CUFF.1559_From_wu_0_2824162_0...done Loading CUFF.983_From_ct_1_3241157_0...done Loading CUFF.1175_From_hi_0_2953648_0...done Loading CUFF.967_From_edi_0_2887084_2...done Loading CUFF.1455_From_wil_2_3068737_0...done Loading CUFF.1645_From_wu_0_2816600_0...done Loading CUFF.1473_From_ws_0_3293243_0...done Loading CUFF.1399_From_wil_2_2978735_0...done Loading CUFF.969_From_edi_0_2888616_0...done Loading CUFF.1305_From_rsch_4_4263688_0...done Loading CUFF.1373_From_tsu_0_3208747_0...done Loading CUFF.985_From_edi_0_2921730_0...done Loading CUFF.913_From_can_0_3217045_0...done Loading CUFF.1433_From_wil_2_3079625_0...done Loading CUFF.961_From_ct_1_3302721_0...done Loading CUFF.1601_From_zu_0_3250197_1...done Loading CUFF.1173_From_no_0_3113578_1...done Loading CUFF.1187_From_oy_0_3098144_0...done Loading CUFF.1351_From_tsu_0_3175121_0...done Loading CUFF.1543_From_ws_0_3373604_0...done Loading CUFF.1409_From_wil_2_3066229_0...done Loading CUFF.911_From_can_0_3230893_0...done Loading CUFF.1639_From_zu_0_3291057_0...done Loading CUFF.1075_From_edi_0_2906444_0...done Loading CUFF.1471_From_tsu_0_3212935_0...done Loading CUFF.1413_From_sf_2_2687786_0...done Loading CUFF.1167_From_no_0_3096552_0...done Loading CUFF.875_From_bur_0_1999718_0...done Loading CUFF.1475_From_ws_0_3313321_0...done Loading CUFF.1483_From_ws_0_3364198_0...done Loading CUFF.1565_From_zu_0_3075813_0...done Loading CUFF.1363_From_sf_2_2671632_0...done Loading CUFF.1197_From_oy_0_3103794_0...done Loading CUFF.1311_From_rsch_4_4275442_0...done Loading CUFF.1343_From_sf_2_2689374_0...done Loading CUFF.1339_From_sf_2_2689374_0...done Loading CUFF.1359_From_tsu_0_3148935_0...done Loading CUFF.1223_From_po_0_3340213_0...done Loading CUFF.1329_From_sf_2_2642906_0...done Loading CUFF.1407_From_wil_2_3063473_0...done Loading CUFF.1641_From_zu_0_3291057_0...done Loading CUFF.1035_From_kn_0_3751597_0...done Loading CUFF.1169_From_no_0_3101262_0...done Loading CUFF.1423_From_wil_2_3072219_0...done Loading CUFF.1361_From_tsu_0_3175121_0...done Loading CUFF.1325_From_sf_2_2626132_0...done Loading CUFF.1261_From_po_0_3599571_0...done Loading CUFF.1375_From_tsu_0_3211741_0...done Loading CUFF.1417_From_wil_2_3078633_1...done Loading CUFF.1583_From_wu_0_2829124_0...done Loading CUFF.1267_From_no_0_3128142_0...done Loading CUFF.1309_From_rsch_4_4307314_0...done Loading CUFF.1499_From_ws_0_3382714_0...done Loading CUFF.1177_From_no_0_3116640_0...done Loading CUFF.1605_From_zu_0_3257369_0...done Loading CUFF.865_From_bur_0_1967596_0...done Loading CUFF.949_From_can_0_3218459_0...done Loading CUFF.1419_From_sf_2_2701328_0...done Loading CUFF.1345_From_sf_2_2689374_0...done Loading CUFF.1619_From_zu_0_3280025_0...done Loading CUFF.1065_From_ler_0_4153595_0...done Loading CUFF.1595_From_zu_0_3238769_0...done Loading CUFF.1111_From_ler_0_4165287_0...done Loading CUFF.1215_From_oy_0_3162092_0...done Loading CUFF.975_From_edi_0_2902016_0...done Loading CUFF.1545_From_wu_0_2770362_0...done Loading CUFF.1089_From_ler_0_4224097_0...done Loading CUFF.943_From_ct_1_3247037_0...done Loading CUFF.1077_From_ler_0_4225073_0...done Loading CUFF.1607_From_zu_0_3255169_0...done Loading CUFF.1487_From_ws_0_3347582_0...done Loading CUFF.1643_From_wu_0_2816600_0...done Loading CUFF.1609_From_zu_0_3260873_0...done Loading CUFF.1189_From_oy_0_3115434_0...done Loading CUFF.1467_From_ws_0_3309675_0...done Loading CUFF.1553_From_wu_0_2806776_0...done Loading CUFF.1439_From_wil_2_3089541_0...done Loading CUFF.879_From_bur_0_2021834_0...done Loading CUFF.1265_From_po_0_3577252_0...done Loading CUFF.1073_From_ler_0_4209589_1...done Loading CUFF.1479_From_ws_0_3339092_0...done Loading CUFF.1451_From_wil_2_3077447_0...done Loading CUFF.1347_From_sf_2_2682779_0...done Loading CUFF.1635_From_zu_0_3263539_0...done Loading CUFF.1579_From_wu_0_2802868_0...done Loading CUFF.1365_From_tsu_0_3179519_0...done Loading CUFF.1513_From_ws_0_3381290_0...done Loading CUFF.915_From_can_0_3231205_0...done Loading CUFF.1383_From_tsu_0_3242833_1...done Loading CUFF.1415_From_wil_2_3082811_1...done Loading CUFF.1421_From_tsu_0_3215821_0...done Loading CUFF.919_From_can_0_3258779_0...done Loading CUFF.909_From_can_0_3223655_0...done Loading CUFF.1029_From_kn_0_3802200_0...done Loading CUFF.1393_From_tsu_0_3228555_0...done Loading CUFF.1437_From_wil_2_3088151_0...done Loading CUFF.1377_From_tsu_0_3215671_0...done Loading CUFF.1633_From_zu_0_3280213_0...done Loading CUFF.1333_From_sf_2_2666154_1...done Loading CUFF.1405_From_wil_2_3052951_0...done Loading CUFF.971_From_edi_0_2891226_0...done Loading CUFF.1623_From_zu_0_3289907_1...done Loading CUFF.1557_From_wu_0_2824308_0...done Loading CUFF.1015_From_hi_0_2966608_0...done Loading CUFF.951_From_ct_1_3280175_0...done Loading CUFF.1159_From_no_0_3088052_0...done Loading CUFF.1621_From_zu_0_3275363_0...done Loading CUFF.871_From_bur_0_2012810_0...done Loading CUFF.889_From_bur_0_2032354_0...done Loading CUFF.1647_From_zu_0_3289907_1...done Loading CUFF.1289_From_po_0_3606391_0...done Loading CUFF.1053_From_kn_0_3819922_1...done Loading CUFF.877_From_bur_0_2022518_0...done Loading CUFF.1371_From_tsu_0_3211333_0...done Loading CUFF.1279_From_po_0_3599571_0...done Loading CUFF.1577_From_wu_0_2832848_0...done Loading CUFF.1033_From_kn_0_3799876_0...done Loading CUFF.1561_From_wu_0_2827904_0...done Loading CUFF.1041_From_kn_0_3824150_0...done Loading CUFF.1369_From_sf_2_2700286_0...done Loading CUFF.1627_From_zu_0_3262887_0...done Loading CUFF.899_From_bur_0_2022518_0...done Loading CUFF.941_From_bur_0_2025286_0...done Loading CUFF.1585_From_wu_0_2837848_0...done Loading CUFF.1269_From_po_0_3606391_1...done Loading CUFF.1381_From_tsu_0_3240885_0...done Loading CUFF.1181_From_no_0_3120392_0...done Loading CUFF.1501_From_ws_0_3365892_0...done Loading CUFF.1425_From_wil_2_3091415_1...done Loading CUFF.1537_From_ws_0_3382500_0...done Loading CUFF.873_From_bur_0_2020452_0...done Loading CUFF.1277_From_po_0_3599571_0...done Loading CUFF.1447_From_wil_2_3091415_1...done Loading CUFF.897_From_bur_0_2022518_0...done Loading CUFF.997_From_edi_0_2934714_0...done Loading CUFF.977_From_edi_0_2934714_0...done Loading CUFF.979_From_edi_0_2934714_0...done Loading CUFF.1485_From_ws_0_3371988_0...done Loading left segment hits... Microaligned 2066 segments done. Found 188 potential split-segment junctions Found 11 potential small deletions Found 5 potential small insertions Indexing extensions in ./wil_2.TOnovel/tmp/left_kept_reads_seg1_missing.fq Indexing extensions in ./wil_2.TOnovel/tmp/left_kept_reads_seg2_missing.fq Indexing extensions in ./wil_2.TOnovel/tmp/left_kept_reads_seg3_missing.fq Total extensions: 33146973 Total extensions: 33146973 Total extensions: 33146973 Looking for junctions by island end pairings Adding hits from segment file 0 to coverage map Adding hits from segment file 1 to coverage map Adding hits from segment file 2 to coverage map Map covers 21766 bases Map covers 21471 bases in sufficiently long segments Map contains 289 good islands 9728 are left looking bases 7947 are right looking bases Collecting potential splice sites in islands reporting synthetic splice junctions... Examining donor-acceptor pairings in CUFF.1561_From_wu_0_2827904_0 Examining donor-acceptor pairings in CUFF.1463_From_ws_0_3190679_0 Examining donor-acceptor pairings in CUFF.1405_From_wil_2_3052951_0 Examining donor-acceptor pairings in CUFF.1207_From_po_0_3308932_0 Examining donor-acceptor pairings in CUFF.1419_From_sf_2_2701328_0 Examining donor-acceptor pairings in CUFF.961_From_ct_1_3302721_0 Examining donor-acceptor pairings in CUFF.1279_From_po_0_3599571_0 Examining donor-acceptor pairings in CUFF.1253_From_po_0_3387411_0 Examining donor-acceptor pairings in CUFF.1399_From_wil_2_2978735_0 Examining donor-acceptor pairings in CUFF.1275_From_po_0_3332479_0 Examining donor-acceptor pairings in CUFF.1531_From_ws_0_3340488_0 Examining donor-acceptor pairings in CUFF.1015_From_hi_0_2966608_0 Examining donor-acceptor pairings in CUFF.1407_From_wil_2_3063473_0 Examining donor-acceptor pairings in CUFF.1577_From_wu_0_2832848_0 Examining donor-acceptor pairings in CUFF.1621_From_zu_0_3275363_0 Examining donor-acceptor pairings in CUFF.1611_From_zu_0_3255503_0 Examining donor-acceptor pairings in CUFF.1631_From_zu_0_3277661_1 Examining donor-acceptor pairings in CUFF.1513_From_ws_0_3381290_0 Examining donor-acceptor pairings in CUFF.1073_From_ler_0_4209589_1 Examining donor-acceptor pairings in CUFF.1643_From_wu_0_2816600_0 Examining donor-acceptor pairings in CUFF.1637_From_zu_0_3277661_0 Examining donor-acceptor pairings in CUFF.1215_From_oy_0_3162092_0 Examining donor-acceptor pairings in CUFF.911_From_can_0_3230893_0 Examining donor-acceptor pairings in CUFF.1269_From_po_0_3606391_1 Examining donor-acceptor pairings in CUFF.1271_From_rsch_4_4034850_0 Examining donor-acceptor pairings in CUFF.1437_From_wil_2_3088151_0 Examining donor-acceptor pairings in CUFF.869_From_bur_0_1873494_0 Examining donor-acceptor pairings in CUFF.1223_From_po_0_3340213_0 Examining donor-acceptor pairings in CUFF.1455_From_wil_2_3068737_0 Examining donor-acceptor pairings in CUFF.1451_From_wil_2_3077447_0 Examining donor-acceptor pairings in CUFF.1367_From_tsu_0_3135135_0 Examining donor-acceptor pairings in CUFF.1008_From_kn_0_3525938_0 Examining donor-acceptor pairings in CUFF.909_From_can_0_3223655_0 Examining donor-acceptor pairings in CUFF.1089_From_ler_0_4224097_0 Examining donor-acceptor pairings in CUFF.1533_From_wu_0_2683442_0 Examining donor-acceptor pairings in CUFF.1365_From_tsu_0_3179519_0 Examining donor-acceptor pairings in CUFF.1277_From_po_0_3599571_0 Examining donor-acceptor pairings in CUFF.1575_From_wu_0_2831218_0 Examining donor-acceptor pairings in CUFF.1615_From_zu_0_3118546_0 Examining donor-acceptor pairings in CUFF.955_From_edi_0_2766531_0 Examining donor-acceptor pairings in CUFF.1259_From_po_0_3402348_0 Examining donor-acceptor pairings in CUFF.1017_From_kn_0_3566907_0 Examining donor-acceptor pairings in CUFF.1583_From_wu_0_2829124_0 Examining donor-acceptor pairings in CUFF.1109_From_mt_0_4194856_0 Examining donor-acceptor pairings in CUFF.1359_From_tsu_0_3148935_0 Examining donor-acceptor pairings in CUFF.1019_From_edi_0_2859720_0 Examining donor-acceptor pairings in CUFF.1361_From_tsu_0_3175121_0 Examining donor-acceptor pairings in CUFF.1251_From_po_0_3400198_0 Examining donor-acceptor pairings in CUFF.1545_From_wu_0_2770362_0 Examining donor-acceptor pairings in CUFF.1381_From_tsu_0_3240885_0 Examining donor-acceptor pairings in CUFF.1483_From_ws_0_3364198_0 Examining donor-acceptor pairings in CUFF.929_From_can_0_3263637_0 Examining donor-acceptor pairings in CUFF.1641_From_zu_0_3291057_0 Examining donor-acceptor pairings in CUFF.1425_From_wil_2_3091415_1 Examining donor-acceptor pairings in CUFF.1349_From_mt_0_4528444_1 Examining donor-acceptor pairings in CUFF.1395_From_wil_2_2904915_0 Examining donor-acceptor pairings in CUFF.1335_From_sf_2_2524453_0 Examining donor-acceptor pairings in CUFF.1601_From_zu_0_3250197_1 Examining donor-acceptor pairings in CUFF.1535_From_wu_0_2676799_0 Examining donor-acceptor pairings in CUFF.1165_From_no_0_2959683_0 Examining donor-acceptor pairings in CUFF.1559_From_wu_0_2824162_0 Examining donor-acceptor pairings in CUFF.871_From_bur_0_2012810_0 Examining donor-acceptor pairings in CUFF.1163_From_no_0_2951521_0 Examining donor-acceptor pairings in CUFF.1309_From_rsch_4_4307314_0 Examining donor-acceptor pairings in CUFF.1625_From_zu_0_3243571_0 Examining donor-acceptor pairings in CUFF.1635_From_zu_0_3263539_0 Examining donor-acceptor pairings in CUFF.1443_From_wil_2_3052273_0 Examining donor-acceptor pairings in CUFF.973_From_edi_0_2871668_0 Examining donor-acceptor pairings in CUFF.1049_From_ler_0_4002120_0 Examining donor-acceptor pairings in CUFF.1415_From_wil_2_3082811_1 Examining donor-acceptor pairings in CUFF.1301_From_rsch_4_4111713_0 Examining donor-acceptor pairings in CUFF.1491_From_ws_0_3373966_0 Examining donor-acceptor pairings in CUFF.969_From_edi_0_2888616_0 Examining donor-acceptor pairings in CUFF.1397_From_tsu_0_3228017_0 Examining donor-acceptor pairings in CUFF.967_From_edi_0_2887084_2 Examining donor-acceptor pairings in CUFF.1377_From_tsu_0_3215671_0 Examining donor-acceptor pairings in CUFF.1439_From_wil_2_3089541_0 Examining donor-acceptor pairings in CUFF.1417_From_wil_2_3078633_1 Examining donor-acceptor pairings in CUFF.1045_From_kn_0_3605300_0 Examining donor-acceptor pairings in CUFF.1409_From_wil_2_3066229_0 Examining donor-acceptor pairings in CUFF.1053_From_kn_0_3819922_1 Examining donor-acceptor pairings in CUFF.1423_From_wil_2_3072219_0 Examining donor-acceptor pairings in CUFF.963_From_edi_0_2744702_0 Examining donor-acceptor pairings in CUFF.1431_From_ws_0_3170660_0 Examining donor-acceptor pairings in CUFF.1401_From_wil_2_3050523_0 Examining donor-acceptor pairings in CUFF.1411_From_rsch_4_4266550_0 Examining donor-acceptor pairings in CUFF.1563_From_ws_0_3381390_0 Examining donor-acceptor pairings in CUFF.1475_From_ws_0_3313321_0 Examining donor-acceptor pairings in CUFF.1593_From_zu_0_3112556_0 Examining donor-acceptor pairings in CUFF.1267_From_no_0_3128142_0 Examining donor-acceptor pairings in CUFF.1603_From_zu_0_3242889_0 Examining donor-acceptor pairings in CUFF.1493_From_wil_2_3087183_0 Examining donor-acceptor pairings in CUFF.1645_From_wu_0_2816600_0 Examining donor-acceptor pairings in CUFF.915_From_can_0_3231205_0 Examining donor-acceptor pairings in CUFF.1139_From_ler_0_4211779_1 Examining donor-acceptor pairings in CUFF.1087_From_ler_0_4211779_0 Examining donor-acceptor pairings in CUFF.1565_From_zu_0_3075813_0 Examining donor-acceptor pairings in CUFF.1141_From_mt_0_4449890_0 Found 5 potential island-end pairing junctions done Aligning 2066 microexon segments in 177 windows window 100 Checked 4132 segments against 177 windows for microexon junctions Found 4 potential microexon junctions -- microexon -- CUFF.1615_From_zu_0_3118546_0 90 146 + CUFF.1615_From_zu_0_3118546_0 90 162 + CUFF.1615_From_zu_0_3118546_0 90 167 + CUFF.1419_From_sf_2_2701328_0 140 458 + -- done -- -- seg -- CUFF.1419_From_sf_2_2701328_0 174 447 - CUFF.1419_From_sf_2_2701328_0 174 458 + CUFF.1419_From_sf_2_2701328_0 179 444 + CUFF.1419_From_sf_2_2701328_0 185 444 + CUFF.1419_From_sf_2_2701328_0 185 456 + CUFF.1419_From_sf_2_2701328_0 187 458 + CUFF.1419_From_sf_2_2701328_0 188 444 - CUFF.1419_From_sf_2_2701328_0 188 450 - CUFF.1419_From_sf_2_2701328_0 188 456 - CUFF.1419_From_sf_2_2701328_0 196 447 - CUFF.1419_From_sf_2_2701328_0 196 453 - CUFF.1419_From_sf_2_2701328_0 196 458 + CUFF.1419_From_sf_2_2701328_0 198 444 - CUFF.1419_From_sf_2_2701328_0 198 450 - CUFF.1419_From_sf_2_2701328_0 198 456 - CUFF.1419_From_sf_2_2701328_0 200 444 - CUFF.1419_From_sf_2_2701328_0 200 450 - CUFF.1419_From_sf_2_2701328_0 200 456 - CUFF.1419_From_sf_2_2701328_0 203 447 - CUFF.1419_From_sf_2_2701328_0 203 453 - CUFF.1419_From_sf_2_2701328_0 203 458 + CUFF.1419_From_sf_2_2701328_0 205 447 - CUFF.1419_From_sf_2_2701328_0 205 453 - CUFF.1419_From_sf_2_2701328_0 205 458 + CUFF.1621_From_zu_0_3275363_0 368 465 - CUFF.1621_From_zu_0_3275363_0 368 473 - CUFF.1621_From_zu_0_3275363_0 378 473 + CUFF.1621_From_zu_0_3275363_0 380 464 + CUFF.1621_From_zu_0_3275363_0 384 473 + CUFF.1621_From_zu_0_3275363_0 387 465 - CUFF.1621_From_zu_0_3275363_0 387 473 - CUFF.1621_From_zu_0_3275363_0 390 464 + CUFF.1621_From_zu_0_3275363_0 390 470 - CUFF.1621_From_zu_0_3275363_0 393 464 + CUFF.1621_From_zu_0_3275363_0 394 465 - CUFF.1621_From_zu_0_3275363_0 394 473 - CUFF.1621_From_zu_0_3275363_0 399 464 + CUFF.1621_From_zu_0_3275363_0 399 470 - CUFF.1451_From_wil_2_3077447_0 72 227 + CUFF.1451_From_wil_2_3077447_0 76 227 + CUFF.1451_From_wil_2_3077447_0 76 238 - CUFF.1451_From_wil_2_3077447_0 84 230 + CUFF.1451_From_wil_2_3077447_0 87 230 - CUFF.1451_From_wil_2_3077447_0 87 240 - CUFF.1451_From_wil_2_3077447_0 90 230 + CUFF.1451_From_wil_2_3077447_0 93 227 + CUFF.1451_From_wil_2_3077447_0 93 238 - CUFF.1451_From_wil_2_3077447_0 97 227 + CUFF.1451_From_wil_2_3077447_0 97 238 - CUFF.1443_From_wil_2_3052273_0 104 199 - CUFF.1443_From_wil_2_3052273_0 104 204 - CUFF.1443_From_wil_2_3052273_0 108 196 - CUFF.1443_From_wil_2_3052273_0 113 204 + CUFF.1443_From_wil_2_3052273_0 115 199 - CUFF.1443_From_wil_2_3052273_0 115 204 - CUFF.1443_From_wil_2_3052273_0 119 204 + CUFF.1443_From_wil_2_3052273_0 124 178 - CUFF.1443_From_wil_2_3052273_0 124 196 - CUFF.1443_From_wil_2_3052273_0 129 204 + CUFF.1443_From_wil_2_3052273_0 135 204 + CUFF.1377_From_tsu_0_3215671_0 258 526 + CUFF.1377_From_tsu_0_3215671_0 263 533 + CUFF.1377_From_tsu_0_3215671_0 263 546 - CUFF.1377_From_tsu_0_3215671_0 268 526 + CUFF.1377_From_tsu_0_3215671_0 273 526 - CUFF.1377_From_tsu_0_3215671_0 273 544 - CUFF.1377_From_tsu_0_3215671_0 275 533 + CUFF.1377_From_tsu_0_3215671_0 275 546 - CUFF.1377_From_tsu_0_3215671_0 278 526 + CUFF.1377_From_tsu_0_3215671_0 281 533 + CUFF.1439_From_wil_2_3089541_0 167 340 + CUFF.1439_From_wil_2_3089541_0 168 341 - CUFF.1439_From_wil_2_3089541_0 168 355 - CUFF.1439_From_wil_2_3089541_0 170 341 - CUFF.1439_From_wil_2_3089541_0 170 355 - CUFF.1439_From_wil_2_3089541_0 173 341 - CUFF.1439_From_wil_2_3089541_0 173 355 - CUFF.1439_From_wil_2_3089541_0 176 338 - CUFF.1439_From_wil_2_3089541_0 176 340 + CUFF.1439_From_wil_2_3089541_0 176 343 - CUFF.1439_From_wil_2_3089541_0 180 338 - CUFF.1439_From_wil_2_3089541_0 180 340 + CUFF.1439_From_wil_2_3089541_0 180 343 - CUFF.1439_From_wil_2_3089541_0 186 340 + CUFF.1439_From_wil_2_3089541_0 188 341 - CUFF.1439_From_wil_2_3089541_0 188 355 - CUFF.1439_From_wil_2_3089541_0 194 338 - CUFF.1439_From_wil_2_3089541_0 194 340 + CUFF.1439_From_wil_2_3089541_0 194 343 - CUFF.1439_From_wil_2_3089541_0 199 341 - CUFF.1439_From_wil_2_3089541_0 199 355 - CUFF.1419_From_sf_2_2701328_0 174 453 - CUFF.1419_From_sf_2_2701328_0 179 456 + CUFF.1419_From_sf_2_2701328_0 185 456 + CUFF.1419_From_sf_2_2701328_0 185 468 + CUFF.1419_From_sf_2_2701328_0 188 456 - CUFF.1419_From_sf_2_2701328_0 188 468 - CUFF.1419_From_sf_2_2701328_0 196 453 - CUFF.1419_From_sf_2_2701328_0 196 463 - CUFF.1419_From_sf_2_2701328_0 198 456 - CUFF.1419_From_sf_2_2701328_0 198 468 - CUFF.1419_From_sf_2_2701328_0 200 456 - CUFF.1419_From_sf_2_2701328_0 200 468 - CUFF.1419_From_sf_2_2701328_0 203 453 - CUFF.1419_From_sf_2_2701328_0 203 463 - CUFF.1419_From_sf_2_2701328_0 205 453 - CUFF.1419_From_sf_2_2701328_0 205 463 - CUFF.1621_From_zu_0_3275363_0 368 480 - CUFF.1621_From_zu_0_3275363_0 378 480 + CUFF.1621_From_zu_0_3275363_0 380 487 + CUFF.1621_From_zu_0_3275363_0 384 480 + CUFF.1621_From_zu_0_3275363_0 387 480 - CUFF.1621_From_zu_0_3275363_0 390 475 - CUFF.1621_From_zu_0_3275363_0 390 487 + CUFF.1621_From_zu_0_3275363_0 393 487 + CUFF.1621_From_zu_0_3275363_0 394 480 - CUFF.1621_From_zu_0_3275363_0 399 475 - CUFF.1621_From_zu_0_3275363_0 399 487 + CUFF.1451_From_wil_2_3077447_0 72 236 + CUFF.1451_From_wil_2_3077447_0 76 236 + CUFF.1451_From_wil_2_3077447_0 76 244 - CUFF.1451_From_wil_2_3077447_0 93 236 + CUFF.1451_From_wil_2_3077447_0 93 244 - CUFF.1451_From_wil_2_3077447_0 97 236 + CUFF.1451_From_wil_2_3077447_0 97 244 - CUFF.1443_From_wil_2_3052273_0 108 209 - CUFF.1443_From_wil_2_3052273_0 124 181 - CUFF.1443_From_wil_2_3052273_0 124 209 - CUFF.1377_From_tsu_0_3215671_0 258 528 + CUFF.1377_From_tsu_0_3215671_0 263 543 + CUFF.1377_From_tsu_0_3215671_0 268 528 + CUFF.1377_From_tsu_0_3215671_0 273 528 - CUFF.1377_From_tsu_0_3215671_0 275 543 + CUFF.1377_From_tsu_0_3215671_0 278 528 + CUFF.1377_From_tsu_0_3215671_0 281 543 + CUFF.1439_From_wil_2_3089541_0 170 368 - CUFF.1439_From_wil_2_3089541_0 173 368 - CUFF.1439_From_wil_2_3089541_0 176 343 - CUFF.1439_From_wil_2_3089541_0 176 359 - CUFF.1439_From_wil_2_3089541_0 180 343 - CUFF.1439_From_wil_2_3089541_0 180 359 - CUFF.1439_From_wil_2_3089541_0 188 368 - CUFF.1439_From_wil_2_3089541_0 194 343 - CUFF.1439_From_wil_2_3089541_0 194 359 - CUFF.1439_From_wil_2_3089541_0 199 368 - CUFF.1419_From_sf_2_2701328_0 174 463 - CUFF.1419_From_sf_2_2701328_0 179 468 + CUFF.1419_From_sf_2_2701328_0 185 468 + CUFF.1419_From_sf_2_2701328_0 188 468 - CUFF.1419_From_sf_2_2701328_0 196 463 - CUFF.1419_From_sf_2_2701328_0 196 474 - CUFF.1419_From_sf_2_2701328_0 198 468 - CUFF.1419_From_sf_2_2701328_0 200 468 - CUFF.1419_From_sf_2_2701328_0 203 463 - CUFF.1419_From_sf_2_2701328_0 203 474 - CUFF.1419_From_sf_2_2701328_0 205 463 - CUFF.1419_From_sf_2_2701328_0 205 474 - CUFF.1621_From_zu_0_3275363_0 368 489 - CUFF.1621_From_zu_0_3275363_0 378 489 + CUFF.1621_From_zu_0_3275363_0 384 489 + CUFF.1621_From_zu_0_3275363_0 387 489 - CUFF.1621_From_zu_0_3275363_0 390 484 - CUFF.1621_From_zu_0_3275363_0 394 489 - CUFF.1621_From_zu_0_3275363_0 399 484 - CUFF.1451_From_wil_2_3077447_0 72 242 + CUFF.1451_From_wil_2_3077447_0 76 242 + CUFF.1451_From_wil_2_3077447_0 93 242 + CUFF.1451_From_wil_2_3077447_0 97 242 + CUFF.1443_From_wil_2_3052273_0 108 221 - CUFF.1443_From_wil_2_3052273_0 124 186 - CUFF.1443_From_wil_2_3052273_0 124 221 - CUFF.1377_From_tsu_0_3215671_0 258 535 + CUFF.1377_From_tsu_0_3215671_0 268 535 + CUFF.1377_From_tsu_0_3215671_0 273 535 - CUFF.1377_From_tsu_0_3215671_0 278 535 + CUFF.1439_From_wil_2_3089541_0 176 359 - CUFF.1439_From_wil_2_3089541_0 176 366 - CUFF.1439_From_wil_2_3089541_0 180 359 - CUFF.1439_From_wil_2_3089541_0 180 366 - CUFF.1439_From_wil_2_3089541_0 194 359 - CUFF.1439_From_wil_2_3089541_0 194 366 - CUFF.1419_From_sf_2_2701328_0 196 474 - CUFF.1419_From_sf_2_2701328_0 203 474 - CUFF.1419_From_sf_2_2701328_0 205 474 - CUFF.1443_From_wil_2_3052273_0 108 224 - CUFF.1443_From_wil_2_3052273_0 124 196 - CUFF.1443_From_wil_2_3052273_0 124 224 - CUFF.1443_From_wil_2_3052273_0 124 209 - -- done -- -- cov -- CUFF.1439_From_wil_2_3089541_0 176 340 + CUFF.1139_From_ler_0_4211779_1 818 1114 - CUFF.1443_From_wil_2_3052273_0 115 204 - CUFF.1381_From_tsu_0_3240885_0 729 1118 + CUFF.1405_From_wil_2_3052951_0 77 840 + -- done -- -- buf -- -- done -- Reporting potential splice junctions...done Reported 170 total possible splices Reporting potential deletions... Reporting potential insertions...