tophat_reports v1.2.0 (1752)
---------------------------------------
[samopen] SAM header is present: 271 sequences.
SQ: CUFF.1003_From_hi_0_2790034_0 - 183
SQ: CUFF.1007_From_edi_0_2888586_0 - 1045
SQ: CUFF.1008_From_kn_0_3525938_0 - 121
SQ: CUFF.1011_From_edi_0_2918156_0 - 344
SQ: CUFF.1013_From_kn_0_3532396_0 - 123
SQ: CUFF.1015_From_hi_0_2966608_0 - 969
SQ: CUFF.1017_From_kn_0_3566907_0 - 138
SQ: CUFF.1019_From_edi_0_2859720_0 - 409
SQ: CUFF.1027_From_kn_0_3558357_0 - 136
SQ: CUFF.1029_From_kn_0_3802200_0 - 745
SQ: CUFF.1033_From_kn_0_3799876_0 - 1476
SQ: CUFF.1035_From_kn_0_3751597_0 - 544
SQ: CUFF.1041_From_kn_0_3824150_0 - 1688
SQ: CUFF.1045_From_kn_0_3605300_0 - 167
SQ: CUFF.1049_From_ler_0_4002120_0 - 168
SQ: CUFF.1053_From_kn_0_3819922_1 - 2042
SQ: CUFF.1055_From_ler_0_4004770_0 - 167
SQ: CUFF.1061_From_ler_0_4016532_0 - 161
SQ: CUFF.1065_From_ler_0_4153595_0 - 431
SQ: CUFF.1069_From_hi_0_2916184_0 - 533
SQ: CUFF.1073_From_ler_0_4209589_1 - 1073
SQ: CUFF.1075_From_edi_0_2906444_0 - 817
SQ: CUFF.1077_From_ler_0_4225073_0 - 458
SQ: CUFF.1079_From_mt_0_4085357_0 - 108
SQ: CUFF.1081_From_mt_0_4099484_0 - 114
SQ: CUFF.1087_From_ler_0_4211779_0 - 452
SQ: CUFF.1089_From_ler_0_4224097_0 - 937
SQ: CUFF.1093_From_mt_0_4130072_0 - 125
SQ: CUFF.1095_From_mt_0_4131964_0 - 128
SQ: CUFF.1099_From_mt_0_4177596_0 - 153
SQ: CUFF.1101_From_mt_0_4188374_0 - 162
SQ: CUFF.1109_From_mt_0_4194856_0 - 124
SQ: CUFF.1111_From_ler_0_4165287_0 - 739
SQ: CUFF.1113_From_mt_0_4206392_0 - 168
SQ: CUFF.1117_From_hi_0_2939638_0 - 445
SQ: CUFF.1119_From_hi_0_2939638_0 - 122
SQ: CUFF.1121_From_mt_0_4226690_0 - 194
SQ: CUFF.1133_From_mt_0_4399784_0 - 210
SQ: CUFF.1139_From_ler_0_4211779_1 - 1160
SQ: CUFF.1141_From_mt_0_4449890_0 - 153
SQ: CUFF.1149_From_mt_0_4217716_0 - 116
SQ: CUFF.1153_From_no_0_2923846_0 - 140
SQ: CUFF.1155_From_no_0_2905273_0 - 123
SQ: CUFF.1157_From_no_0_2939843_0 - 155
SQ: CUFF.1159_From_no_0_3088052_0 - 500
SQ: CUFF.1163_From_no_0_2951521_0 - 154
SQ: CUFF.1165_From_no_0_2959683_0 - 182
SQ: CUFF.1167_From_no_0_3096552_0 - 393
SQ: CUFF.1169_From_no_0_3101262_0 - 708
SQ: CUFF.1173_From_no_0_3113578_1 - 297
SQ: CUFF.1175_From_hi_0_2953648_0 - 1321
SQ: CUFF.1177_From_no_0_3116640_0 - 1188
SQ: CUFF.1181_From_no_0_3120392_0 - 2344
SQ: CUFF.1187_From_oy_0_3098144_0 - 333
SQ: CUFF.1189_From_oy_0_3115434_0 - 676
SQ: CUFF.1197_From_oy_0_3103794_0 - 321
SQ: CUFF.1207_From_po_0_3308932_0 - 123
SQ: CUFF.1209_From_po_0_3295404_0 - 115
SQ: CUFF.1211_From_po_0_3269389_0 - 108
SQ: CUFF.1213_From_po_0_3316390_0 - 122
SQ: CUFF.1215_From_oy_0_3162092_0 - 1655
SQ: CUFF.1219_From_po_0_3319326_0 - 129
SQ: CUFF.1223_From_po_0_3340213_0 - 137
SQ: CUFF.1229_From_po_0_3339041_0 - 136
SQ: CUFF.1231_From_oy_0_2965192_0 - 128
SQ: CUFF.1233_From_po_0_3365309_0 - 158
SQ: CUFF.1251_From_po_0_3400198_0 - 180
SQ: CUFF.1253_From_po_0_3387411_0 - 180
SQ: CUFF.1259_From_po_0_3402348_0 - 196
SQ: CUFF.1261_From_po_0_3599571_0 - 181
SQ: CUFF.1265_From_po_0_3577252_0 - 648
SQ: CUFF.1267_From_no_0_3128142_0 - 2175
SQ: CUFF.1269_From_po_0_3606391_1 - 869
SQ: CUFF.1271_From_rsch_4_4034850_0 - 102
SQ: CUFF.1275_From_po_0_3332479_0 - 136
SQ: CUFF.1277_From_po_0_3599571_0 - 1028
SQ: CUFF.1279_From_po_0_3599571_0 - 914
SQ: CUFF.1281_From_oy_0_3121110_0 - 508
SQ: CUFF.1285_From_rsch_4_4085063_0 - 128
SQ: CUFF.1287_From_rsch_4_4099439_0 - 140
SQ: CUFF.1289_From_po_0_3606391_0 - 1759
SQ: CUFF.1293_From_rsch_4_4107621_0 - 153
SQ: CUFF.1295_From_rsch_4_4118037_0 - 169
SQ: CUFF.1301_From_rsch_4_4111713_0 - 161
SQ: CUFF.1305_From_rsch_4_4263688_0 - 403
SQ: CUFF.1307_From_rsch_4_4277566_0 - 93
SQ: CUFF.1309_From_rsch_4_4307314_0 - 423
SQ: CUFF.1311_From_rsch_4_4275442_0 - 618
SQ: CUFF.1313_From_po_0_3573778_0 - 652
SQ: CUFF.1315_From_rsch_4_4277566_0 - 218
SQ: CUFF.1325_From_sf_2_2626132_0 - 436
SQ: CUFF.1329_From_sf_2_2642906_0 - 739
SQ: CUFF.1333_From_sf_2_2666154_1 - 696
SQ: CUFF.1335_From_sf_2_2524453_0 - 169
SQ: CUFF.1337_From_sf_2_2662232_0 - 83
SQ: CUFF.1339_From_sf_2_2689374_0 - 114
SQ: CUFF.1343_From_sf_2_2689374_0 - 185
SQ: CUFF.1345_From_sf_2_2689374_0 - 400
SQ: CUFF.1347_From_sf_2_2682779_0 - 798
SQ: CUFF.1349_From_mt_0_4528444_1 - 647
SQ: CUFF.1351_From_tsu_0_3175121_0 - 141
SQ: CUFF.1353_From_tsu_0_3002533_0 - 119
SQ: CUFF.1359_From_tsu_0_3148935_0 - 348
SQ: CUFF.1361_From_tsu_0_3175121_0 - 426
SQ: CUFF.1363_From_sf_2_2671632_0 - 986
SQ: CUFF.1365_From_tsu_0_3179519_0 - 611
SQ: CUFF.1367_From_tsu_0_3135135_0 - 210
SQ: CUFF.1369_From_sf_2_2700286_0 - 2492
SQ: CUFF.1371_From_tsu_0_3211333_0 - 1292
SQ: CUFF.1373_From_tsu_0_3208747_0 - 392
SQ: CUFF.1375_From_tsu_0_3211741_0 - 785
SQ: CUFF.1377_From_tsu_0_3215671_0 - 844
SQ: CUFF.1379_From_sf_2_2656790_0 - 363
SQ: CUFF.1381_From_tsu_0_3240885_0 - 1536
SQ: CUFF.1383_From_tsu_0_3242833_1 - 782
SQ: CUFF.1385_From_sf_2_2653966_0 - 695
SQ: CUFF.1393_From_tsu_0_3228555_0 - 525
SQ: CUFF.1395_From_wil_2_2904915_0 - 161
SQ: CUFF.1397_From_tsu_0_3228017_0 - 274
SQ: CUFF.1399_From_wil_2_2978735_0 - 293
SQ: CUFF.1401_From_wil_2_3050523_0 - 273
SQ: CUFF.1405_From_wil_2_3052951_0 - 908
SQ: CUFF.1407_From_wil_2_3063473_0 - 756
SQ: CUFF.1409_From_wil_2_3066229_0 - 445
SQ: CUFF.1411_From_rsch_4_4266550_0 - 1153
SQ: CUFF.1413_From_sf_2_2687786_0 - 2198
SQ: CUFF.1415_From_wil_2_3082811_1 - 654
SQ: CUFF.1417_From_wil_2_3078633_1 - 472
SQ: CUFF.1419_From_sf_2_2701328_0 - 728
SQ: CUFF.1421_From_tsu_0_3215821_0 - 891
SQ: CUFF.1423_From_wil_2_3072219_0 - 1092
SQ: CUFF.1425_From_wil_2_3091415_1 - 1316
SQ: CUFF.1427_From_ws_0_3077529_0 - 108
SQ: CUFF.1431_From_ws_0_3170660_0 - 164
SQ: CUFF.1433_From_wil_2_3079625_0 - 489
SQ: CUFF.1437_From_wil_2_3088151_0 - 1407
SQ: CUFF.1439_From_wil_2_3089541_0 - 443
SQ: CUFF.1443_From_wil_2_3052273_0 - 668
SQ: CUFF.1447_From_wil_2_3091415_1 - 1761
SQ: CUFF.1451_From_wil_2_3077447_0 - 1243
SQ: CUFF.1453_From_ws_0_3185408_0 - 188
SQ: CUFF.1455_From_wil_2_3068737_0 - 1058
SQ: CUFF.1459_From_ws_0_3182508_0 - 183
SQ: CUFF.1463_From_ws_0_3190679_0 - 194
SQ: CUFF.1465_From_ws_0_3190963_0 - 167
SQ: CUFF.1467_From_ws_0_3309675_0 - 549
SQ: CUFF.1471_From_tsu_0_3212935_0 - 1034
SQ: CUFF.1473_From_ws_0_3293243_0 - 322
SQ: CUFF.1475_From_ws_0_3313321_0 - 533
SQ: CUFF.1479_From_ws_0_3339092_0 - 655
SQ: CUFF.1481_From_ws_0_3349444_1 - 177
SQ: CUFF.1483_From_ws_0_3364198_0 - 320
SQ: CUFF.1485_From_ws_0_3371988_0 - 685
SQ: CUFF.1487_From_ws_0_3347582_0 - 1310
SQ: CUFF.1489_From_ws_0_3372620_0 - 290
SQ: CUFF.1491_From_ws_0_3373966_0 - 306
SQ: CUFF.1493_From_wil_2_3087183_0 - 810
SQ: CUFF.1495_From_ws_0_3371988_0 - 323
SQ: CUFF.1497_From_ws_0_3380934_0 - 217
SQ: CUFF.1499_From_ws_0_3382714_0 - 476
SQ: CUFF.1501_From_ws_0_3365892_0 - 2013
SQ: CUFF.1503_From_wu_0_2588697_0 - 101
SQ: CUFF.1505_From_wu_0_2607348_0 - 109
SQ: CUFF.1507_From_wu_0_2587993_0 - 100
SQ: CUFF.1509_From_wu_0_2616263_0 - 82
SQ: CUFF.1513_From_ws_0_3381290_0 - 860
SQ: CUFF.1515_From_wu_0_2648785_0 - 143
SQ: CUFF.1519_From_wu_0_2597064_0 - 105
SQ: CUFF.1521_From_ws_0_3344070_0 - 901
SQ: CUFF.1523_From_wu_0_2638225_0 - 125
SQ: CUFF.1527_From_wu_0_2675967_0 - 168
SQ: CUFF.1529_From_wu_0_2655159_0 - 150
SQ: CUFF.1531_From_ws_0_3340488_0 - 343
SQ: CUFF.1533_From_wu_0_2683442_0 - 191
SQ: CUFF.1535_From_wu_0_2676799_0 - 179
SQ: CUFF.1537_From_ws_0_3382500_0 - 3666
SQ: CUFF.1539_From_wu_0_2702886_0 - 153
SQ: CUFF.1543_From_ws_0_3373604_0 - 622
SQ: CUFF.1545_From_wu_0_2770362_0 - 523
SQ: CUFF.1547_From_wu_0_2685428_0 - 195
SQ: CUFF.1553_From_wu_0_2806776_0 - 879
SQ: CUFF.1557_From_wu_0_2824308_0 - 825
SQ: CUFF.1559_From_wu_0_2824162_0 - 554
SQ: CUFF.1561_From_wu_0_2827904_0 - 2049
SQ: CUFF.1563_From_ws_0_3381390_0 - 964
SQ: CUFF.1565_From_zu_0_3075813_0 - 134
SQ: CUFF.1569_From_zu_0_3035650_0 - 117
SQ: CUFF.1573_From_zu_0_3065917_0 - 136
SQ: CUFF.1575_From_wu_0_2831218_0 - 207
SQ: CUFF.1577_From_wu_0_2832848_0 - 740
SQ: CUFF.1579_From_wu_0_2802868_0 - 919
SQ: CUFF.1583_From_wu_0_2829124_0 - 382
SQ: CUFF.1585_From_wu_0_2837848_0 - 2017
SQ: CUFF.1591_From_zu_0_3092045_0 - 156
SQ: CUFF.1593_From_zu_0_3112556_0 - 182
SQ: CUFF.1595_From_zu_0_3238769_0 - 445
SQ: CUFF.1597_From_zu_0_3181459_0 - 290
SQ: CUFF.1599_From_zu_0_3200689_0 - 234
SQ: CUFF.1601_From_zu_0_3250197_1 - 494
SQ: CUFF.1603_From_zu_0_3242889_0 - 388
SQ: CUFF.1605_From_zu_0_3257369_0 - 694
SQ: CUFF.1607_From_zu_0_3255169_0 - 1080
SQ: CUFF.1609_From_zu_0_3260873_0 - 552
SQ: CUFF.1611_From_zu_0_3255503_0 - 328
SQ: CUFF.1613_From_zu_0_3259399_1 - 232
SQ: CUFF.1615_From_zu_0_3118546_0 - 173
SQ: CUFF.1617_From_zu_0_3278243_0 - 211
SQ: CUFF.1619_From_zu_0_3280025_0 - 761
SQ: CUFF.1621_From_zu_0_3275363_0 - 697
SQ: CUFF.1623_From_zu_0_3289907_1 - 1112
SQ: CUFF.1625_From_zu_0_3243571_0 - 752
SQ: CUFF.1627_From_zu_0_3262887_0 - 675
SQ: CUFF.1629_From_zu_0_3287917_0 - 263
SQ: CUFF.1631_From_zu_0_3277661_1 - 287
SQ: CUFF.1633_From_zu_0_3280213_0 - 1674
SQ: CUFF.1635_From_zu_0_3263539_0 - 1173
SQ: CUFF.1637_From_zu_0_3277661_0 - 680
SQ: CUFF.1639_From_zu_0_3291057_0 - 990
SQ: CUFF.1641_From_zu_0_3291057_0 - 733
SQ: CUFF.1643_From_wu_0_2816600_0 - 1226
SQ: CUFF.1645_From_wu_0_2816600_0 - 1126
SQ: CUFF.1647_From_zu_0_3289907_1 - 1305
SQ: CUFF.1649_From_zu_0_3082201_0 - 148
SQ: CUFF.865_From_bur_0_1967596_0 - 420
SQ: CUFF.867_From_bur_0_1863298_0 - 122
SQ: CUFF.869_From_bur_0_1873494_0 - 187
SQ: CUFF.871_From_bur_0_2012810_0 - 864
SQ: CUFF.873_From_bur_0_2020452_0 - 579
SQ: CUFF.875_From_bur_0_1999718_0 - 899
SQ: CUFF.877_From_bur_0_2022518_0 - 517
SQ: CUFF.879_From_bur_0_2021834_0 - 836
SQ: CUFF.881_From_bur_0_1969548_0 - 679
SQ: CUFF.889_From_bur_0_2032354_0 - 1478
SQ: CUFF.895_From_can_0_3069992_0 - 146
SQ: CUFF.897_From_bur_0_2022518_0 - 724
SQ: CUFF.899_From_bur_0_2022518_0 - 116
SQ: CUFF.901_From_can_0_3094988_0 - 139
SQ: CUFF.907_From_can_0_3122480_0 - 176
SQ: CUFF.909_From_can_0_3223655_0 - 647
SQ: CUFF.911_From_can_0_3230893_0 - 483
SQ: CUFF.913_From_can_0_3217045_0 - 475
SQ: CUFF.915_From_can_0_3231205_0 - 887
SQ: CUFF.919_From_can_0_3258779_0 - 773
SQ: CUFF.921_From_can_0_3233581_0 - 207
SQ: CUFF.927_From_ct_1_3108889_0 - 155
SQ: CUFF.929_From_can_0_3263637_0 - 276
SQ: CUFF.935_From_bur_0_2020452_0 - 1579
SQ: CUFF.937_From_can_0_3239881_0 - 1061
SQ: CUFF.941_From_bur_0_2025286_0 - 2457
SQ: CUFF.943_From_ct_1_3247037_0 - 534
SQ: CUFF.949_From_can_0_3218459_0 - 900
SQ: CUFF.951_From_ct_1_3280175_0 - 1584
SQ: CUFF.953_From_edi_0_2759591_0 - 174
SQ: CUFF.955_From_edi_0_2766531_0 - 183
SQ: CUFF.961_From_ct_1_3302721_0 - 767
SQ: CUFF.963_From_edi_0_2744702_0 - 158
SQ: CUFF.967_From_edi_0_2887084_2 - 264
SQ: CUFF.969_From_edi_0_2888616_0 - 371
SQ: CUFF.971_From_edi_0_2891226_0 - 1093
SQ: CUFF.973_From_edi_0_2871668_0 - 525
SQ: CUFF.975_From_edi_0_2902016_0 - 891
SQ: CUFF.977_From_edi_0_2934714_0 - 568
SQ: CUFF.979_From_edi_0_2934714_0 - 826
SQ: CUFF.981_From_hi_0_2690171_0 - 101
SQ: CUFF.983_From_ct_1_3241157_0 - 667
SQ: CUFF.985_From_edi_0_2921730_0 - 476
SQ: CUFF.989_From_edi_0_2932438_0 - 287
SQ: CUFF.991_From_edi_0_2891968_0 - 417
SQ: CUFF.993_From_hi_0_2787534_0 - 180
SQ: CUFF.995_From_hi_0_2751582_0 - 140
SQ: CUFF.997_From_edi_0_2934714_0 - 3346
Loaded 0 junctions
Reporting final accepted alignments...done
Printing junction BED track...done
Printing insertions...done
Printing deletions...done
Found 0 junctions from happy spliced reads