segment_juncs v1.2.0 (1752) --------------------------- Loading reference sequences... Loading CUFF.1271_From_rsch_4_4034850_0...done Loading CUFF.1337_From_sf_2_2662232_0...done Loading CUFF.1285_From_rsch_4_4085063_0...done Loading CUFF.1565_From_zu_0_3075813_0...done Loading CUFF.1275_From_po_0_3332479_0...done Loading CUFF.1649_From_zu_0_3082201_0...done Loading CUFF.1293_From_rsch_4_4107621_0...done Loading CUFF.1163_From_no_0_2951521_0...done Loading CUFF.1465_From_ws_0_3190963_0...done Loading CUFF.1055_From_ler_0_4004770_0...done Loading CUFF.1335_From_sf_2_2524453_0...done Loading CUFF.907_From_can_0_3122480_0...done Loading CUFF.1481_From_ws_0_3349444_1...done Loading CUFF.1165_From_no_0_2959683_0...done Loading CUFF.1459_From_ws_0_3182508_0...done Loading CUFF.869_From_bur_0_1873494_0...done Loading CUFF.1463_From_ws_0_3190679_0...done Loading CUFF.921_From_can_0_3233581_0...done Loading CUFF.1367_From_tsu_0_3135135_0...done Loading CUFF.1133_From_mt_0_4399784_0...done Loading CUFF.1617_From_zu_0_3278243_0...done Loading CUFF.1497_From_ws_0_3380934_0...done Loading CUFF.1315_From_rsch_4_4277566_0...done Loading CUFF.1613_From_zu_0_3259399_1...done Loading CUFF.1401_From_wil_2_3050523_0...done Loading CUFF.989_From_edi_0_2932438_0...done Loading CUFF.1173_From_no_0_3113578_1...done Loading CUFF.1495_From_ws_0_3371988_0...done Loading CUFF.1611_From_zu_0_3255503_0...done Loading CUFF.1187_From_oy_0_3098144_0...done Loading CUFF.1011_From_edi_0_2918156_0...done Loading CUFF.1603_From_zu_0_3242889_0...done Loading CUFF.1531_From_ws_0_3340488_0...done Loading CUFF.1373_From_tsu_0_3208747_0...done Loading CUFF.865_From_bur_0_1967596_0...done Loading CUFF.1361_From_tsu_0_3175121_0...done Loading CUFF.1065_From_ler_0_4153595_0...done Loading CUFF.1439_From_wil_2_3089541_0...done Loading CUFF.1119_From_hi_0_2939638_0...done Loading CUFF.1117_From_hi_0_2939638_0...done Loading CUFF.1409_From_wil_2_3066229_0...done Loading CUFF.1595_From_zu_0_3238769_0...done Loading CUFF.1077_From_ler_0_4225073_0...done Loading CUFF.913_From_can_0_3217045_0...done Loading CUFF.985_From_edi_0_2921730_0...done Loading CUFF.1281_From_oy_0_3121110_0...done Loading CUFF.973_From_edi_0_2871668_0...done Loading CUFF.943_From_ct_1_3247037_0...done Loading CUFF.1069_From_hi_0_2916184_0...done Loading CUFF.1035_From_kn_0_3751597_0...done Loading CUFF.1543_From_ws_0_3373604_0...done Loading CUFF.983_From_ct_1_3241157_0...done Loading CUFF.1311_From_rsch_4_4275442_0...done Loading CUFF.909_From_can_0_3223655_0...done Loading CUFF.1479_From_ws_0_3339092_0...done Loading CUFF.1443_From_wil_2_3052273_0...done Loading CUFF.881_From_bur_0_1969548_0...done Loading CUFF.1637_From_zu_0_3277661_0...done Loading CUFF.1313_From_po_0_3573778_0...done Loading CUFF.1385_From_sf_2_2653966_0...done Loading CUFF.1169_From_no_0_3101262_0...done Loading CUFF.1419_From_sf_2_2701328_0...done Loading CUFF.1111_From_ler_0_4165287_0...done Loading CUFF.1029_From_kn_0_3802200_0...done Loading CUFF.1625_From_zu_0_3243571_0...done Loading CUFF.1407_From_wil_2_3063473_0...done Loading CUFF.919_From_can_0_3258779_0...done Loading CUFF.1383_From_tsu_0_3242833_1...done Loading CUFF.1375_From_tsu_0_3211741_0...done Loading CUFF.1347_From_sf_2_2682779_0...done Loading CUFF.1493_From_wil_2_3087183_0...done Loading CUFF.1557_From_wu_0_2824308_0...done Loading CUFF.879_From_bur_0_2021834_0...done Loading CUFF.1377_From_tsu_0_3215671_0...done Loading CUFF.1421_From_tsu_0_3215821_0...done Loading CUFF.915_From_can_0_3231205_0...done Loading CUFF.875_From_bur_0_1999718_0...done Loading CUFF.949_From_can_0_3218459_0...done Loading CUFF.1521_From_ws_0_3344070_0...done Loading CUFF.1405_From_wil_2_3052951_0...done Loading CUFF.1089_From_ler_0_4224097_0...done Loading CUFF.1159_From_no_0_3088052_0...done Loading CUFF.1363_From_sf_2_2671632_0...done Loading CUFF.1471_From_tsu_0_3212935_0...done Loading CUFF.1007_From_edi_0_2888586_0...done Loading CUFF.1455_From_wil_2_3068737_0...done Loading CUFF.937_From_can_0_3239881_0...done Loading CUFF.1607_From_zu_0_3255169_0...done Loading CUFF.971_From_edi_0_2891226_0...done Loading CUFF.1623_From_zu_0_3289907_1...done Loading CUFF.1411_From_rsch_4_4266550_0...done Loading CUFF.1177_From_no_0_3116640_0...done Loading CUFF.1451_From_wil_2_3077447_0...done Loading CUFF.1647_From_zu_0_3289907_1...done Loading CUFF.1487_From_ws_0_3347582_0...done Loading CUFF.1175_From_hi_0_2953648_0...done Loading CUFF.1437_From_wil_2_3088151_0...done Loading CUFF.1033_From_kn_0_3799876_0...done Loading CUFF.889_From_bur_0_2032354_0...done Loading CUFF.935_From_bur_0_2020452_0...done Loading CUFF.1215_From_oy_0_3162092_0...done Loading CUFF.1633_From_zu_0_3280213_0...done Loading CUFF.1289_From_po_0_3606391_0...done Loading CUFF.1501_From_ws_0_3365892_0...done Loading CUFF.1585_From_wu_0_2837848_0...done Loading CUFF.1053_From_kn_0_3819922_1...done Loading CUFF.1267_From_no_0_3128142_0...done Loading CUFF.1413_From_sf_2_2687786_0...done Loading CUFF.1181_From_no_0_3120392_0...done Loading CUFF.941_From_bur_0_2025286_0...done Loading CUFF.1369_From_sf_2_2700286_0...done Loading CUFF.997_From_edi_0_2934714_0...done Loading CUFF.1537_From_ws_0_3382500_0...done Loading CUFF.1211_From_po_0_3269389_0...done Loading CUFF.1519_From_wu_0_2597064_0...done Loading CUFF.1507_From_wu_0_2587993_0...done Loading CUFF.1209_From_po_0_3295404_0...done Loading CUFF.1523_From_wu_0_2638225_0...done Loading CUFF.981_From_hi_0_2690171_0...done Loading CUFF.1027_From_kn_0_3558357_0...done Loading CUFF.1093_From_mt_0_4130072_0...done Loading CUFF.1219_From_po_0_3319326_0...done Loading CUFF.1547_From_wu_0_2685428_0...done Loading CUFF.1353_From_tsu_0_3002533_0...done Loading CUFF.1569_From_zu_0_3035650_0...done Loading CUFF.1141_From_mt_0_4449890_0...done Loading CUFF.1529_From_wu_0_2655159_0...done Loading CUFF.1575_From_wu_0_2831218_0...done Loading CUFF.1013_From_kn_0_3532396_0...done Loading CUFF.1095_From_mt_0_4131964_0...done Loading CUFF.1081_From_mt_0_4099484_0...done Loading CUFF.1515_From_wu_0_2648785_0...done Loading CUFF.1153_From_no_0_2923846_0...done Loading CUFF.1307_From_rsch_4_4277566_0...done Loading CUFF.1213_From_po_0_3316390_0...done Loading CUFF.1003_From_hi_0_2790034_0...done Loading CUFF.1631_From_zu_0_3277661_1...done Loading CUFF.1207_From_po_0_3308932_0...done Loading CUFF.1397_From_tsu_0_3228017_0...done Loading CUFF.1008_From_kn_0_3525938_0...done Loading CUFF.1017_From_kn_0_3566907_0...done Loading CUFF.1573_From_zu_0_3065917_0...done Loading CUFF.1099_From_mt_0_4177596_0...done Loading CUFF.1253_From_po_0_3387411_0...done Loading CUFF.1453_From_ws_0_3185408_0...done Loading CUFF.1599_From_zu_0_3200689_0...done Loading CUFF.1229_From_po_0_3339041_0...done Loading CUFF.1061_From_ler_0_4016532_0...done Loading CUFF.901_From_can_0_3094988_0...done Loading CUFF.1629_From_zu_0_3287917_0...done Loading CUFF.1139_From_ler_0_4211779_1...done Loading CUFF.1287_From_rsch_4_4099439_0...done Loading CUFF.1101_From_mt_0_4188374_0...done Loading CUFF.953_From_edi_0_2759591_0...done Loading CUFF.1597_From_zu_0_3181459_0...done Loading CUFF.1233_From_po_0_3365309_0...done Loading CUFF.991_From_edi_0_2891968_0...done Loading CUFF.993_From_hi_0_2787534_0...done Loading CUFF.1049_From_ler_0_4002120_0...done Loading CUFF.1539_From_wu_0_2702886_0...done Loading CUFF.1113_From_mt_0_4206392_0...done Loading CUFF.1431_From_ws_0_3170660_0...done Loading CUFF.1527_From_wu_0_2675967_0...done Loading CUFF.1259_From_po_0_3402348_0...done Loading CUFF.1379_From_sf_2_2656790_0...done Loading CUFF.955_From_edi_0_2766531_0...done Loading CUFF.1491_From_ws_0_3373966_0...done Loading CUFF.1121_From_mt_0_4226690_0...done Loading CUFF.1489_From_ws_0_3372620_0...done Loading CUFF.1087_From_ler_0_4211779_0...done Loading CUFF.1559_From_wu_0_2824162_0...done Loading CUFF.967_From_edi_0_2887084_2...done Loading CUFF.1645_From_wu_0_2816600_0...done Loading CUFF.1473_From_ws_0_3293243_0...done Loading CUFF.1399_From_wil_2_2978735_0...done Loading CUFF.969_From_edi_0_2888616_0...done Loading CUFF.1305_From_rsch_4_4263688_0...done Loading CUFF.911_From_can_0_3230893_0...done Loading CUFF.1639_From_zu_0_3291057_0...done Loading CUFF.1167_From_no_0_3096552_0...done Loading CUFF.1475_From_ws_0_3313321_0...done Loading CUFF.1197_From_oy_0_3103794_0...done Loading CUFF.1359_From_tsu_0_3148935_0...done Loading CUFF.1223_From_po_0_3340213_0...done Loading CUFF.1329_From_sf_2_2642906_0...done Loading CUFF.1641_From_zu_0_3291057_0...done Loading CUFF.1423_From_wil_2_3072219_0...done Loading CUFF.1325_From_sf_2_2626132_0...done Loading CUFF.1417_From_wil_2_3078633_1...done Loading CUFF.1583_From_wu_0_2829124_0...done Loading CUFF.1309_From_rsch_4_4307314_0...done Loading CUFF.1605_From_zu_0_3257369_0...done Loading CUFF.1345_From_sf_2_2689374_0...done Loading CUFF.1619_From_zu_0_3280025_0...done Loading CUFF.975_From_edi_0_2902016_0...done Loading CUFF.1545_From_wu_0_2770362_0...done Loading CUFF.1643_From_wu_0_2816600_0...done Loading CUFF.1609_From_zu_0_3260873_0...done Loading CUFF.1189_From_oy_0_3115434_0...done Loading CUFF.1467_From_ws_0_3309675_0...done Loading CUFF.1553_From_wu_0_2806776_0...done Loading CUFF.1265_From_po_0_3577252_0...done Loading CUFF.1073_From_ler_0_4209589_1...done Loading CUFF.1635_From_zu_0_3263539_0...done Loading CUFF.1579_From_wu_0_2802868_0...done Loading CUFF.1513_From_ws_0_3381290_0...done Loading CUFF.1415_From_wil_2_3082811_1...done Loading CUFF.1393_From_tsu_0_3228555_0...done Loading CUFF.1333_From_sf_2_2666154_1...done Loading CUFF.1015_From_hi_0_2966608_0...done Loading CUFF.951_From_ct_1_3280175_0...done Loading CUFF.871_From_bur_0_2012810_0...done Loading CUFF.1371_From_tsu_0_3211333_0...done Loading CUFF.1279_From_po_0_3599571_0...done Loading CUFF.1577_From_wu_0_2832848_0...done Loading CUFF.1561_From_wu_0_2827904_0...done Loading CUFF.1041_From_kn_0_3824150_0...done Loading CUFF.1627_From_zu_0_3262887_0...done Loading CUFF.1381_From_tsu_0_3240885_0...done Loading CUFF.1277_From_po_0_3599571_0...done Loading CUFF.1447_From_wil_2_3091415_1...done Loading left segment hits... Microaligned 269 segments done. Found 115 potential split-segment junctions Found 8 potential small deletions Found 6 potential small insertions Indexing extensions in ./Ler_0_R2.TOnovel/tmp/left_kept_reads_seg1_missing.fq Indexing extensions in ./Ler_0_R2.TOnovel/tmp/left_kept_reads_seg2_missing.fq Indexing extensions in ./Ler_0_R2.TOnovel/tmp/left_kept_reads_seg3_missing.fq Total extensions: 19386777 Total extensions: 19386777 Total extensions: 19386777 Looking for junctions by island end pairings Adding hits from segment file 0 to coverage map Adding hits from segment file 1 to coverage map Adding hits from segment file 2 to coverage map Map covers 15519 bases Map covers 15294 bases in sufficiently long segments Map contains 223 good islands 7802 are left looking bases 6073 are right looking bases Collecting potential splice sites in islands reporting synthetic splice junctions... Examining donor-acceptor pairings in CUFF.951_From_ct_1_3280175_0 Examining donor-acceptor pairings in CUFF.1561_From_wu_0_2827904_0 Examining donor-acceptor pairings in CUFF.1463_From_ws_0_3190679_0 Examining donor-acceptor pairings in CUFF.1329_From_sf_2_2642906_0 Examining donor-acceptor pairings in CUFF.1027_From_kn_0_3558357_0 Examining donor-acceptor pairings in CUFF.1207_From_po_0_3308932_0 Examining donor-acceptor pairings in CUFF.1279_From_po_0_3599571_0 Examining donor-acceptor pairings in CUFF.1253_From_po_0_3387411_0 Examining donor-acceptor pairings in CUFF.1399_From_wil_2_2978735_0 Examining donor-acceptor pairings in CUFF.1487_From_ws_0_3347582_0 Examining donor-acceptor pairings in CUFF.1275_From_po_0_3332479_0 Examining donor-acceptor pairings in CUFF.1531_From_ws_0_3340488_0 Examining donor-acceptor pairings in CUFF.1521_From_ws_0_3344070_0 Examining donor-acceptor pairings in CUFF.1577_From_wu_0_2832848_0 Examining donor-acceptor pairings in CUFF.1611_From_zu_0_3255503_0 Examining donor-acceptor pairings in CUFF.1631_From_zu_0_3277661_1 Examining donor-acceptor pairings in CUFF.1073_From_ler_0_4209589_1 Examining donor-acceptor pairings in CUFF.1643_From_wu_0_2816600_0 Examining donor-acceptor pairings in CUFF.1637_From_zu_0_3277661_0 Examining donor-acceptor pairings in CUFF.1117_From_hi_0_2939638_0 Examining donor-acceptor pairings in CUFF.1215_From_oy_0_3162092_0 Examining donor-acceptor pairings in CUFF.911_From_can_0_3230893_0 Examining donor-acceptor pairings in CUFF.869_From_bur_0_1873494_0 Examining donor-acceptor pairings in CUFF.1101_From_mt_0_4188374_0 Examining donor-acceptor pairings in CUFF.1223_From_po_0_3340213_0 Examining donor-acceptor pairings in CUFF.1455_From_wil_2_3068737_0 Examining donor-acceptor pairings in CUFF.1573_From_zu_0_3065917_0 Examining donor-acceptor pairings in CUFF.1369_From_sf_2_2700286_0 Examining donor-acceptor pairings in CUFF.1089_From_ler_0_4224097_0 Examining donor-acceptor pairings in CUFF.1277_From_po_0_3599571_0 Examining donor-acceptor pairings in CUFF.955_From_edi_0_2766531_0 Examining donor-acceptor pairings in CUFF.1259_From_po_0_3402348_0 Examining donor-acceptor pairings in CUFF.1583_From_wu_0_2829124_0 Examining donor-acceptor pairings in CUFF.953_From_edi_0_2759591_0 Examining donor-acceptor pairings in CUFF.1413_From_sf_2_2687786_0 Examining donor-acceptor pairings in CUFF.1175_From_hi_0_2953648_0 Examining donor-acceptor pairings in CUFF.1359_From_tsu_0_3148935_0 Examining donor-acceptor pairings in CUFF.983_From_ct_1_3241157_0 Examining donor-acceptor pairings in CUFF.1361_From_tsu_0_3175121_0 Examining donor-acceptor pairings in CUFF.1381_From_tsu_0_3240885_0 Examining donor-acceptor pairings in CUFF.1153_From_no_0_2923846_0 Examining donor-acceptor pairings in CUFF.1055_From_ler_0_4004770_0 Examining donor-acceptor pairings in CUFF.1639_From_zu_0_3291057_0 Examining donor-acceptor pairings in CUFF.1641_From_zu_0_3291057_0 Examining donor-acceptor pairings in CUFF.1169_From_no_0_3101262_0 Examining donor-acceptor pairings in CUFF.1325_From_sf_2_2626132_0 Examining donor-acceptor pairings in CUFF.1003_From_hi_0_2790034_0 Examining donor-acceptor pairings in CUFF.1069_From_hi_0_2916184_0 Examining donor-acceptor pairings in CUFF.1547_From_wu_0_2685428_0 Examining donor-acceptor pairings in CUFF.1375_From_tsu_0_3211741_0 Examining donor-acceptor pairings in CUFF.1165_From_no_0_2959683_0 Examining donor-acceptor pairings in CUFF.1559_From_wu_0_2824162_0 Examining donor-acceptor pairings in CUFF.1311_From_rsch_4_4275442_0 Examining donor-acceptor pairings in CUFF.1163_From_no_0_2951521_0 Examining donor-acceptor pairings in CUFF.1553_From_wu_0_2806776_0 Examining donor-acceptor pairings in CUFF.1625_From_zu_0_3243571_0 Examining donor-acceptor pairings in CUFF.941_From_bur_0_2025286_0 Examining donor-acceptor pairings in CUFF.1635_From_zu_0_3263539_0 Examining donor-acceptor pairings in CUFF.1443_From_wil_2_3052273_0 Examining donor-acceptor pairings in CUFF.1519_From_wu_0_2597064_0 Examining donor-acceptor pairings in CUFF.1529_From_wu_0_2655159_0 Examining donor-acceptor pairings in CUFF.943_From_ct_1_3247037_0 Examining donor-acceptor pairings in CUFF.1491_From_ws_0_3373966_0 Examining donor-acceptor pairings in CUFF.969_From_edi_0_2888616_0 Examining donor-acceptor pairings in CUFF.1121_From_mt_0_4226690_0 Examining donor-acceptor pairings in CUFF.1111_From_ler_0_4165287_0 Examining donor-acceptor pairings in CUFF.1619_From_zu_0_3280025_0 Examining donor-acceptor pairings in CUFF.1397_From_tsu_0_3228017_0 Examining donor-acceptor pairings in CUFF.967_From_edi_0_2887084_2 Examining donor-acceptor pairings in CUFF.1077_From_ler_0_4225073_0 Examining donor-acceptor pairings in CUFF.1011_From_edi_0_2918156_0 Examining donor-acceptor pairings in CUFF.1417_From_wil_2_3078633_1 Examining donor-acceptor pairings in CUFF.1409_From_wil_2_3066229_0 Examining donor-acceptor pairings in CUFF.1649_From_zu_0_3082201_0 Examining donor-acceptor pairings in CUFF.1053_From_kn_0_3819922_1 Examining donor-acceptor pairings in CUFF.1431_From_ws_0_3170660_0 Examining donor-acceptor pairings in CUFF.1411_From_rsch_4_4266550_0 Examining donor-acceptor pairings in CUFF.1267_From_no_0_3128142_0 Examining donor-acceptor pairings in CUFF.1645_From_wu_0_2816600_0 Examining donor-acceptor pairings in CUFF.1139_From_ler_0_4211779_1 Examining donor-acceptor pairings in CUFF.1087_From_ler_0_4211779_0 Examining donor-acceptor pairings in CUFF.1141_From_mt_0_4449890_0 Found 39 potential island-end pairing junctions done Aligning 269 microexon segments in 123 windows window 100 Checked 538 segments against 123 windows for microexon junctions Found 1 potential microexon junctions -- microexon -- CUFF.1111_From_ler_0_4165287_0 539 654 + -- done -- -- seg -- CUFF.1583_From_wu_0_2829124_0 171 231 - CUFF.1583_From_wu_0_2829124_0 174 231 + CUFF.1583_From_wu_0_2829124_0 177 231 - CUFF.1175_From_hi_0_2953648_0 337 606 + CUFF.1175_From_hi_0_2953648_0 344 606 + CUFF.1175_From_hi_0_2953648_0 350 606 + CUFF.1175_From_hi_0_2953648_0 355 606 + CUFF.1175_From_hi_0_2953648_0 357 606 - CUFF.1175_From_hi_0_2953648_0 360 606 + CUFF.1175_From_hi_0_2953648_0 363 601 + CUFF.1175_From_hi_0_2953648_0 421 606 - CUFF.1175_From_hi_0_2953648_0 430 601 + CUFF.1175_From_hi_0_2953648_0 436 601 + CUFF.1175_From_hi_0_2953648_0 442 606 + CUFF.1175_From_hi_0_2953648_0 451 601 + CUFF.1175_From_hi_0_2953648_0 460 606 + CUFF.1175_From_hi_0_2953648_0 466 601 + CUFF.1175_From_hi_0_2953648_0 466 615 - CUFF.1175_From_hi_0_2953648_0 476 606 - CUFF.1175_From_hi_0_2953648_0 480 606 + CUFF.1175_From_hi_0_2953648_0 483 606 + CUFF.1641_From_zu_0_3291057_0 150 241 + CUFF.1641_From_zu_0_3291057_0 154 225 - CUFF.1641_From_zu_0_3291057_0 154 241 - CUFF.1641_From_zu_0_3291057_0 157 241 + CUFF.1641_From_zu_0_3291057_0 165 219 + CUFF.1641_From_zu_0_3291057_0 171 224 + CUFF.1641_From_zu_0_3291057_0 174 241 + CUFF.1641_From_zu_0_3291057_0 180 241 + CUFF.1069_From_hi_0_2916184_0 199 356 + CUFF.1069_From_hi_0_2916184_0 204 364 + CUFF.1069_From_hi_0_2916184_0 208 356 + CUFF.1069_From_hi_0_2916184_0 212 356 + CUFF.1069_From_hi_0_2916184_0 219 356 + CUFF.1443_From_wil_2_3052273_0 93 204 + CUFF.1443_From_wil_2_3052273_0 96 199 - CUFF.1443_From_wil_2_3052273_0 96 204 - CUFF.1443_From_wil_2_3052273_0 100 204 + CUFF.1443_From_wil_2_3052273_0 104 199 - CUFF.1443_From_wil_2_3052273_0 104 204 - CUFF.1443_From_wil_2_3052273_0 108 186 - CUFF.1443_From_wil_2_3052273_0 113 204 + CUFF.1443_From_wil_2_3052273_0 115 199 - CUFF.1443_From_wil_2_3052273_0 115 204 - CUFF.1443_From_wil_2_3052273_0 119 204 + CUFF.1267_From_no_0_3128142_0 107 193 - CUFF.1267_From_no_0_3128142_0 107 200 + CUFF.1267_From_no_0_3128142_0 116 198 - CUFF.1267_From_no_0_3128142_0 116 201 - CUFF.1267_From_no_0_3128142_0 120 193 - CUFF.1267_From_no_0_3128142_0 120 200 + CUFF.1267_From_no_0_3128142_0 135 193 - CUFF.1267_From_no_0_3128142_0 135 200 + CUFF.1583_From_wu_0_2829124_0 171 235 - CUFF.1583_From_wu_0_2829124_0 174 235 + CUFF.1583_From_wu_0_2829124_0 177 235 - CUFF.1175_From_hi_0_2953648_0 337 612 + CUFF.1175_From_hi_0_2953648_0 344 612 + CUFF.1175_From_hi_0_2953648_0 350 612 + CUFF.1175_From_hi_0_2953648_0 355 612 + CUFF.1175_From_hi_0_2953648_0 357 612 - CUFF.1175_From_hi_0_2953648_0 360 612 + CUFF.1175_From_hi_0_2953648_0 363 622 + CUFF.1175_From_hi_0_2953648_0 421 612 - CUFF.1175_From_hi_0_2953648_0 430 622 + CUFF.1175_From_hi_0_2953648_0 436 622 + CUFF.1175_From_hi_0_2953648_0 442 612 + CUFF.1175_From_hi_0_2953648_0 451 622 + CUFF.1175_From_hi_0_2953648_0 460 612 + CUFF.1175_From_hi_0_2953648_0 466 622 + CUFF.1175_From_hi_0_2953648_0 466 625 - CUFF.1175_From_hi_0_2953648_0 476 612 - CUFF.1175_From_hi_0_2953648_0 480 612 + CUFF.1175_From_hi_0_2953648_0 483 612 + CUFF.1641_From_zu_0_3291057_0 154 230 - CUFF.1641_From_zu_0_3291057_0 165 224 + CUFF.1641_From_zu_0_3291057_0 171 227 + CUFF.1069_From_hi_0_2916184_0 204 366 + CUFF.1443_From_wil_2_3052273_0 108 196 - CUFF.1267_From_no_0_3128142_0 107 204 - CUFF.1267_From_no_0_3128142_0 107 213 + CUFF.1267_From_no_0_3128142_0 116 207 - CUFF.1267_From_no_0_3128142_0 120 204 - CUFF.1267_From_no_0_3128142_0 120 213 + CUFF.1267_From_no_0_3128142_0 135 204 - CUFF.1267_From_no_0_3128142_0 135 213 + CUFF.1175_From_hi_0_2953648_0 337 617 + CUFF.1175_From_hi_0_2953648_0 344 617 + CUFF.1175_From_hi_0_2953648_0 350 617 + CUFF.1175_From_hi_0_2953648_0 355 617 + CUFF.1175_From_hi_0_2953648_0 357 617 - CUFF.1175_From_hi_0_2953648_0 360 617 + CUFF.1175_From_hi_0_2953648_0 421 617 - CUFF.1175_From_hi_0_2953648_0 442 617 + CUFF.1175_From_hi_0_2953648_0 460 617 + CUFF.1175_From_hi_0_2953648_0 466 628 - CUFF.1175_From_hi_0_2953648_0 476 617 - CUFF.1175_From_hi_0_2953648_0 480 617 + CUFF.1175_From_hi_0_2953648_0 483 617 + CUFF.1641_From_zu_0_3291057_0 154 234 - CUFF.1641_From_zu_0_3291057_0 165 227 + CUFF.1641_From_zu_0_3291057_0 171 229 + CUFF.1443_From_wil_2_3052273_0 108 209 - CUFF.1267_From_no_0_3128142_0 107 215 - CUFF.1267_From_no_0_3128142_0 107 218 + CUFF.1267_From_no_0_3128142_0 116 221 - CUFF.1267_From_no_0_3128142_0 120 215 - CUFF.1267_From_no_0_3128142_0 120 218 + CUFF.1267_From_no_0_3128142_0 135 215 - CUFF.1267_From_no_0_3128142_0 135 218 + CUFF.1641_From_zu_0_3291057_0 154 236 - CUFF.1641_From_zu_0_3291057_0 165 229 + CUFF.1267_From_no_0_3128142_0 107 220 + CUFF.1267_From_no_0_3128142_0 120 220 + CUFF.1267_From_no_0_3128142_0 135 220 + -- done -- -- cov -- CUFF.1175_From_hi_0_2953648_0 553 606 - CUFF.1369_From_sf_2_2700286_0 1691 2463 - CUFF.1369_From_sf_2_2700286_0 1715 2463 - CUFF.1369_From_sf_2_2700286_0 1726 2463 - CUFF.1369_From_sf_2_2700286_0 1845 2463 - CUFF.1369_From_sf_2_2700286_0 1852 2463 - CUFF.1369_From_sf_2_2700286_0 1863 2463 - CUFF.1369_From_sf_2_2700286_0 1866 2463 - CUFF.1369_From_sf_2_2700286_0 1876 2463 - CUFF.1369_From_sf_2_2700286_0 1878 2463 - CUFF.1369_From_sf_2_2700286_0 1888 2460 + CUFF.1369_From_sf_2_2700286_0 1890 2463 - CUFF.1369_From_sf_2_2700286_0 1681 2463 - CUFF.1175_From_hi_0_2953648_0 476 617 - CUFF.1369_From_sf_2_2700286_0 1600 2460 + CUFF.1369_From_sf_2_2700286_0 1556 2460 + CUFF.1369_From_sf_2_2700286_0 1585 2460 + CUFF.1369_From_sf_2_2700286_0 1587 2463 - CUFF.1369_From_sf_2_2700286_0 1589 2460 + CUFF.1369_From_sf_2_2700286_0 1593 2463 - CUFF.1369_From_sf_2_2700286_0 1324 2460 + CUFF.1369_From_sf_2_2700286_0 1352 2460 + CUFF.1369_From_sf_2_2700286_0 1562 2463 - CUFF.1369_From_sf_2_2700286_0 1564 2463 - CUFF.1369_From_sf_2_2700286_0 1560 2463 - CUFF.1175_From_hi_0_2953648_0 357 617 - CUFF.1369_From_sf_2_2700286_0 964 2460 + CUFF.1369_From_sf_2_2700286_0 539 2460 + CUFF.1521_From_ws_0_3344070_0 75 808 + CUFF.1521_From_ws_0_3344070_0 75 813 + CUFF.1369_From_sf_2_2700286_0 1313 2463 - CUFF.1369_From_sf_2_2700286_0 932 2463 - CUFF.1369_From_sf_2_2700286_0 936 2463 - CUFF.1369_From_sf_2_2700286_0 170 2460 + CUFF.1369_From_sf_2_2700286_0 189 2460 + CUFF.1369_From_sf_2_2700286_0 509 2463 - CUFF.1369_From_sf_2_2700286_0 515 2463 - CUFF.1369_From_sf_2_2700286_0 157 2463 - CUFF.1369_From_sf_2_2700286_0 167 2463 - -- done -- -- buf -- -- done -- Reporting potential splice junctions...done Reported 153 total possible splices Reporting potential deletions... Reporting potential insertions...