segment_juncs v1.2.0 (1752) --------------------------- Loading reference sequences... Loading CUFF.1271_From_rsch_4_4034850_0...done Loading CUFF.1337_From_sf_2_2662232_0...done Loading CUFF.1285_From_rsch_4_4085063_0...done Loading CUFF.1565_From_zu_0_3075813_0...done Loading CUFF.1275_From_po_0_3332479_0...done Loading CUFF.1649_From_zu_0_3082201_0...done Loading CUFF.1293_From_rsch_4_4107621_0...done Loading CUFF.1163_From_no_0_2951521_0...done Loading CUFF.1465_From_ws_0_3190963_0...done Loading CUFF.1055_From_ler_0_4004770_0...done Loading CUFF.1335_From_sf_2_2524453_0...done Loading CUFF.907_From_can_0_3122480_0...done Loading CUFF.1481_From_ws_0_3349444_1...done Loading CUFF.1165_From_no_0_2959683_0...done Loading CUFF.1459_From_ws_0_3182508_0...done Loading CUFF.869_From_bur_0_1873494_0...done Loading CUFF.1463_From_ws_0_3190679_0...done Loading CUFF.921_From_can_0_3233581_0...done Loading CUFF.1367_From_tsu_0_3135135_0...done Loading CUFF.1133_From_mt_0_4399784_0...done Loading CUFF.1617_From_zu_0_3278243_0...done Loading CUFF.1497_From_ws_0_3380934_0...done Loading CUFF.1315_From_rsch_4_4277566_0...done Loading CUFF.1613_From_zu_0_3259399_1...done Loading CUFF.1401_From_wil_2_3050523_0...done Loading CUFF.989_From_edi_0_2932438_0...done Loading CUFF.1173_From_no_0_3113578_1...done Loading CUFF.1495_From_ws_0_3371988_0...done Loading CUFF.1611_From_zu_0_3255503_0...done Loading CUFF.1187_From_oy_0_3098144_0...done Loading CUFF.1011_From_edi_0_2918156_0...done Loading CUFF.1603_From_zu_0_3242889_0...done Loading CUFF.1531_From_ws_0_3340488_0...done Loading CUFF.1373_From_tsu_0_3208747_0...done Loading CUFF.865_From_bur_0_1967596_0...done Loading CUFF.1361_From_tsu_0_3175121_0...done Loading CUFF.1065_From_ler_0_4153595_0...done Loading CUFF.1439_From_wil_2_3089541_0...done Loading CUFF.1119_From_hi_0_2939638_0...done Loading CUFF.1117_From_hi_0_2939638_0...done Loading CUFF.1409_From_wil_2_3066229_0...done Loading CUFF.1595_From_zu_0_3238769_0...done Loading CUFF.1077_From_ler_0_4225073_0...done Loading CUFF.913_From_can_0_3217045_0...done Loading CUFF.985_From_edi_0_2921730_0...done Loading CUFF.1281_From_oy_0_3121110_0...done Loading CUFF.973_From_edi_0_2871668_0...done Loading CUFF.943_From_ct_1_3247037_0...done Loading CUFF.1069_From_hi_0_2916184_0...done Loading CUFF.1035_From_kn_0_3751597_0...done Loading CUFF.1543_From_ws_0_3373604_0...done Loading CUFF.983_From_ct_1_3241157_0...done Loading CUFF.1311_From_rsch_4_4275442_0...done Loading CUFF.909_From_can_0_3223655_0...done Loading CUFF.1479_From_ws_0_3339092_0...done Loading CUFF.1443_From_wil_2_3052273_0...done Loading CUFF.881_From_bur_0_1969548_0...done Loading CUFF.1637_From_zu_0_3277661_0...done Loading CUFF.1313_From_po_0_3573778_0...done Loading CUFF.1385_From_sf_2_2653966_0...done Loading CUFF.1169_From_no_0_3101262_0...done Loading CUFF.1419_From_sf_2_2701328_0...done Loading CUFF.1111_From_ler_0_4165287_0...done Loading CUFF.1029_From_kn_0_3802200_0...done Loading CUFF.1625_From_zu_0_3243571_0...done Loading CUFF.1407_From_wil_2_3063473_0...done Loading CUFF.919_From_can_0_3258779_0...done Loading CUFF.1383_From_tsu_0_3242833_1...done Loading CUFF.1375_From_tsu_0_3211741_0...done Loading CUFF.1347_From_sf_2_2682779_0...done Loading CUFF.1493_From_wil_2_3087183_0...done Loading CUFF.1557_From_wu_0_2824308_0...done Loading CUFF.879_From_bur_0_2021834_0...done Loading CUFF.1377_From_tsu_0_3215671_0...done Loading CUFF.1421_From_tsu_0_3215821_0...done Loading CUFF.915_From_can_0_3231205_0...done Loading CUFF.875_From_bur_0_1999718_0...done Loading CUFF.949_From_can_0_3218459_0...done Loading CUFF.1521_From_ws_0_3344070_0...done Loading CUFF.1405_From_wil_2_3052951_0...done Loading CUFF.1089_From_ler_0_4224097_0...done Loading CUFF.1159_From_no_0_3088052_0...done Loading CUFF.1363_From_sf_2_2671632_0...done Loading CUFF.1471_From_tsu_0_3212935_0...done Loading CUFF.1007_From_edi_0_2888586_0...done Loading CUFF.1455_From_wil_2_3068737_0...done Loading CUFF.937_From_can_0_3239881_0...done Loading CUFF.1607_From_zu_0_3255169_0...done Loading CUFF.971_From_edi_0_2891226_0...done Loading CUFF.1623_From_zu_0_3289907_1...done Loading CUFF.1411_From_rsch_4_4266550_0...done Loading CUFF.1177_From_no_0_3116640_0...done Loading CUFF.1451_From_wil_2_3077447_0...done Loading CUFF.1647_From_zu_0_3289907_1...done Loading CUFF.1487_From_ws_0_3347582_0...done Loading CUFF.1175_From_hi_0_2953648_0...done Loading CUFF.1437_From_wil_2_3088151_0...done Loading CUFF.1033_From_kn_0_3799876_0...done Loading CUFF.889_From_bur_0_2032354_0...done Loading CUFF.935_From_bur_0_2020452_0...done Loading CUFF.1215_From_oy_0_3162092_0...done Loading CUFF.1633_From_zu_0_3280213_0...done Loading CUFF.1289_From_po_0_3606391_0...done Loading CUFF.1501_From_ws_0_3365892_0...done Loading CUFF.1585_From_wu_0_2837848_0...done Loading CUFF.1053_From_kn_0_3819922_1...done Loading CUFF.1267_From_no_0_3128142_0...done Loading CUFF.1413_From_sf_2_2687786_0...done Loading CUFF.1181_From_no_0_3120392_0...done Loading CUFF.941_From_bur_0_2025286_0...done Loading CUFF.1369_From_sf_2_2700286_0...done Loading CUFF.997_From_edi_0_2934714_0...done Loading CUFF.1537_From_ws_0_3382500_0...done Loading CUFF.1211_From_po_0_3269389_0...done Loading CUFF.1519_From_wu_0_2597064_0...done Loading CUFF.1507_From_wu_0_2587993_0...done Loading CUFF.1209_From_po_0_3295404_0...done Loading CUFF.1523_From_wu_0_2638225_0...done Loading CUFF.981_From_hi_0_2690171_0...done Loading CUFF.1027_From_kn_0_3558357_0...done Loading CUFF.1093_From_mt_0_4130072_0...done Loading CUFF.1219_From_po_0_3319326_0...done Loading CUFF.1547_From_wu_0_2685428_0...done Loading CUFF.1353_From_tsu_0_3002533_0...done Loading CUFF.1569_From_zu_0_3035650_0...done Loading CUFF.1141_From_mt_0_4449890_0...done Loading CUFF.1529_From_wu_0_2655159_0...done Loading CUFF.1575_From_wu_0_2831218_0...done Loading CUFF.1013_From_kn_0_3532396_0...done Loading CUFF.1095_From_mt_0_4131964_0...done Loading CUFF.1081_From_mt_0_4099484_0...done Loading CUFF.1515_From_wu_0_2648785_0...done Loading CUFF.1153_From_no_0_2923846_0...done Loading CUFF.1307_From_rsch_4_4277566_0...done Loading CUFF.1213_From_po_0_3316390_0...done Loading CUFF.1003_From_hi_0_2790034_0...done Loading CUFF.1631_From_zu_0_3277661_1...done Loading CUFF.1207_From_po_0_3308932_0...done Loading CUFF.1397_From_tsu_0_3228017_0...done Loading CUFF.1008_From_kn_0_3525938_0...done Loading CUFF.1017_From_kn_0_3566907_0...done Loading CUFF.1573_From_zu_0_3065917_0...done Loading CUFF.1099_From_mt_0_4177596_0...done Loading CUFF.1253_From_po_0_3387411_0...done Loading CUFF.1453_From_ws_0_3185408_0...done Loading CUFF.1599_From_zu_0_3200689_0...done Loading CUFF.1229_From_po_0_3339041_0...done Loading CUFF.1061_From_ler_0_4016532_0...done Loading CUFF.901_From_can_0_3094988_0...done Loading CUFF.1629_From_zu_0_3287917_0...done Loading CUFF.1139_From_ler_0_4211779_1...done Loading CUFF.1287_From_rsch_4_4099439_0...done Loading CUFF.1101_From_mt_0_4188374_0...done Loading CUFF.953_From_edi_0_2759591_0...done Loading CUFF.1597_From_zu_0_3181459_0...done Loading CUFF.1233_From_po_0_3365309_0...done Loading CUFF.991_From_edi_0_2891968_0...done Loading CUFF.993_From_hi_0_2787534_0...done Loading CUFF.1049_From_ler_0_4002120_0...done Loading CUFF.1539_From_wu_0_2702886_0...done Loading CUFF.1113_From_mt_0_4206392_0...done Loading CUFF.1431_From_ws_0_3170660_0...done Loading CUFF.1527_From_wu_0_2675967_0...done Loading CUFF.1259_From_po_0_3402348_0...done Loading CUFF.1379_From_sf_2_2656790_0...done Loading CUFF.955_From_edi_0_2766531_0...done Loading CUFF.1491_From_ws_0_3373966_0...done Loading CUFF.1121_From_mt_0_4226690_0...done Loading CUFF.1489_From_ws_0_3372620_0...done Loading CUFF.1087_From_ler_0_4211779_0...done Loading CUFF.1559_From_wu_0_2824162_0...done Loading CUFF.967_From_edi_0_2887084_2...done Loading CUFF.1645_From_wu_0_2816600_0...done Loading CUFF.1473_From_ws_0_3293243_0...done Loading CUFF.1399_From_wil_2_2978735_0...done Loading CUFF.969_From_edi_0_2888616_0...done Loading CUFF.1305_From_rsch_4_4263688_0...done Loading CUFF.911_From_can_0_3230893_0...done Loading CUFF.1639_From_zu_0_3291057_0...done Loading CUFF.1167_From_no_0_3096552_0...done Loading CUFF.1475_From_ws_0_3313321_0...done Loading CUFF.1197_From_oy_0_3103794_0...done Loading CUFF.1359_From_tsu_0_3148935_0...done Loading CUFF.1223_From_po_0_3340213_0...done Loading CUFF.1329_From_sf_2_2642906_0...done Loading CUFF.1641_From_zu_0_3291057_0...done Loading CUFF.1423_From_wil_2_3072219_0...done Loading CUFF.1325_From_sf_2_2626132_0...done Loading CUFF.1417_From_wil_2_3078633_1...done Loading CUFF.1583_From_wu_0_2829124_0...done Loading CUFF.1309_From_rsch_4_4307314_0...done Loading CUFF.1605_From_zu_0_3257369_0...done Loading CUFF.1345_From_sf_2_2689374_0...done Loading CUFF.1619_From_zu_0_3280025_0...done Loading CUFF.975_From_edi_0_2902016_0...done Loading CUFF.1545_From_wu_0_2770362_0...done Loading CUFF.1643_From_wu_0_2816600_0...done Loading CUFF.1609_From_zu_0_3260873_0...done Loading CUFF.1189_From_oy_0_3115434_0...done Loading CUFF.1467_From_ws_0_3309675_0...done Loading CUFF.1553_From_wu_0_2806776_0...done Loading CUFF.1265_From_po_0_3577252_0...done Loading CUFF.1073_From_ler_0_4209589_1...done Loading CUFF.1635_From_zu_0_3263539_0...done Loading CUFF.1579_From_wu_0_2802868_0...done Loading CUFF.1513_From_ws_0_3381290_0...done Loading CUFF.1415_From_wil_2_3082811_1...done Loading CUFF.1393_From_tsu_0_3228555_0...done Loading CUFF.1333_From_sf_2_2666154_1...done Loading CUFF.1015_From_hi_0_2966608_0...done Loading CUFF.951_From_ct_1_3280175_0...done Loading CUFF.871_From_bur_0_2012810_0...done Loading CUFF.1371_From_tsu_0_3211333_0...done Loading CUFF.1279_From_po_0_3599571_0...done Loading CUFF.1577_From_wu_0_2832848_0...done Loading CUFF.1561_From_wu_0_2827904_0...done Loading CUFF.1041_From_kn_0_3824150_0...done Loading CUFF.1627_From_zu_0_3262887_0...done Loading CUFF.1381_From_tsu_0_3240885_0...done Loading CUFF.1277_From_po_0_3599571_0...done Loading CUFF.1447_From_wil_2_3091415_1...done Loading left segment hits... Microaligned 3305 segments done. Found 439 potential split-segment junctions Found 29 potential small deletions Found 20 potential small insertions Indexing extensions in Can_0_direct2rna//tmp/left_kept_reads_seg1_missing.fq Indexing extensions in Can_0_direct2rna//tmp/left_kept_reads_seg2_missing.fq Indexing extensions in Can_0_direct2rna//tmp/left_kept_reads_seg3_missing.fq Total extensions: 270496158 Total extensions: 270496158 Total extensions: 270496158 Looking for junctions by island end pairings Adding hits from segment file 0 to coverage map Adding hits from segment file 1 to coverage map Adding hits from segment file 2 to coverage map Map covers 36003 bases Map covers 35670 bases in sufficiently long segments Map contains 332 good islands 11098 are left looking bases 10032 are right looking bases Collecting potential splice sites in islands reporting synthetic splice junctions... Examining donor-acceptor pairings in CUFF.1471_From_tsu_0_3212935_0 Examining donor-acceptor pairings in CUFF.1561_From_wu_0_2827904_0 Examining donor-acceptor pairings in CUFF.1605_From_zu_0_3257369_0 Examining donor-acceptor pairings in CUFF.1329_From_sf_2_2642906_0 Examining donor-acceptor pairings in CUFF.981_From_hi_0_2690171_0 Examining donor-acceptor pairings in CUFF.1597_From_zu_0_3181459_0 Examining donor-acceptor pairings in CUFF.1531_From_ws_0_3340488_0 Examining donor-acceptor pairings in CUFF.1015_From_hi_0_2966608_0 Examining donor-acceptor pairings in CUFF.1609_From_zu_0_3260873_0 Examining donor-acceptor pairings in CUFF.1577_From_wu_0_2832848_0 Examining donor-acceptor pairings in CUFF.1631_From_zu_0_3277661_1 Examining donor-acceptor pairings in CUFF.949_From_can_0_3218459_0 Examining donor-acceptor pairings in CUFF.1513_From_ws_0_3381290_0 Examining donor-acceptor pairings in CUFF.1489_From_ws_0_3372620_0 Examining donor-acceptor pairings in CUFF.1305_From_rsch_4_4263688_0 Examining donor-acceptor pairings in CUFF.1073_From_ler_0_4209589_1 Examining donor-acceptor pairings in CUFF.1265_From_po_0_3577252_0 Examining donor-acceptor pairings in CUFF.1215_From_oy_0_3162092_0 Examining donor-acceptor pairings in CUFF.911_From_can_0_3230893_0 Examining donor-acceptor pairings in CUFF.1177_From_no_0_3116640_0 Examining donor-acceptor pairings in CUFF.1007_From_edi_0_2888586_0 Examining donor-acceptor pairings in CUFF.869_From_bur_0_1873494_0 Examining donor-acceptor pairings in CUFF.1101_From_mt_0_4188374_0 Examining donor-acceptor pairings in CUFF.937_From_can_0_3239881_0 Examining donor-acceptor pairings in CUFF.1159_From_no_0_3088052_0 Examining donor-acceptor pairings in CUFF.1197_From_oy_0_3103794_0 Examining donor-acceptor pairings in CUFF.909_From_can_0_3223655_0 Examining donor-acceptor pairings in CUFF.955_From_edi_0_2766531_0 Examining donor-acceptor pairings in CUFF.1259_From_po_0_3402348_0 Examining donor-acceptor pairings in CUFF.1583_From_wu_0_2829124_0 Examining donor-acceptor pairings in CUFF.1175_From_hi_0_2953648_0 Examining donor-acceptor pairings in CUFF.1359_From_tsu_0_3148935_0 Examining donor-acceptor pairings in CUFF.1345_From_sf_2_2689374_0 Examining donor-acceptor pairings in CUFF.1361_From_tsu_0_3175121_0 Examining donor-acceptor pairings in CUFF.881_From_bur_0_1969548_0 Examining donor-acceptor pairings in CUFF.1167_From_no_0_3096552_0 Examining donor-acceptor pairings in CUFF.1639_From_zu_0_3291057_0 Examining donor-acceptor pairings in CUFF.919_From_can_0_3258779_0 Examining donor-acceptor pairings in CUFF.1641_From_zu_0_3291057_0 Examining donor-acceptor pairings in CUFF.1325_From_sf_2_2626132_0 Examining donor-acceptor pairings in CUFF.1029_From_kn_0_3802200_0 Examining donor-acceptor pairings in CUFF.1003_From_hi_0_2790034_0 Examining donor-acceptor pairings in CUFF.1335_From_sf_2_2524453_0 Examining donor-acceptor pairings in CUFF.1547_From_wu_0_2685428_0 Examining donor-acceptor pairings in CUFF.1479_From_ws_0_3339092_0 Examining donor-acceptor pairings in CUFF.1281_From_oy_0_3121110_0 Examining donor-acceptor pairings in CUFF.997_From_edi_0_2934714_0 Examining donor-acceptor pairings in CUFF.871_From_bur_0_2012810_0 Examining donor-acceptor pairings in CUFF.1453_From_ws_0_3185408_0 Examining donor-acceptor pairings in CUFF.1553_From_wu_0_2806776_0 Examining donor-acceptor pairings in CUFF.1041_From_kn_0_3824150_0 Examining donor-acceptor pairings in CUFF.1309_From_rsch_4_4307314_0 Examining donor-acceptor pairings in CUFF.1625_From_zu_0_3243571_0 Examining donor-acceptor pairings in CUFF.941_From_bur_0_2025286_0 Examining donor-acceptor pairings in CUFF.1635_From_zu_0_3263539_0 Examining donor-acceptor pairings in CUFF.943_From_ct_1_3247037_0 Examining donor-acceptor pairings in CUFF.1491_From_ws_0_3373966_0 Examining donor-acceptor pairings in CUFF.1599_From_zu_0_3200689_0 Examining donor-acceptor pairings in CUFF.1595_From_zu_0_3238769_0 Examining donor-acceptor pairings in CUFF.1213_From_po_0_3316390_0 Examining donor-acceptor pairings in CUFF.1497_From_ws_0_3380934_0 Examining donor-acceptor pairings in CUFF.1619_From_zu_0_3280025_0 Examining donor-acceptor pairings in CUFF.967_From_edi_0_2887084_2 Examining donor-acceptor pairings in CUFF.1473_From_ws_0_3293243_0 Examining donor-acceptor pairings in CUFF.1417_From_wil_2_3078633_1 Examining donor-acceptor pairings in CUFF.1333_From_sf_2_2666154_1 Examining donor-acceptor pairings in CUFF.1585_From_wu_0_2837848_0 Examining donor-acceptor pairings in CUFF.1409_From_wil_2_3066229_0 Examining donor-acceptor pairings in CUFF.1053_From_kn_0_3819922_1 Examining donor-acceptor pairings in CUFF.1423_From_wil_2_3072219_0 Examining donor-acceptor pairings in CUFF.1431_From_ws_0_3170660_0 Examining donor-acceptor pairings in CUFF.1421_From_tsu_0_3215821_0 Examining donor-acceptor pairings in CUFF.1401_From_wil_2_3050523_0 Examining donor-acceptor pairings in CUFF.1347_From_sf_2_2682779_0 Examining donor-acceptor pairings in CUFF.1475_From_ws_0_3313321_0 Examining donor-acceptor pairings in CUFF.1267_From_no_0_3128142_0 Examining donor-acceptor pairings in CUFF.1603_From_zu_0_3242889_0 Examining donor-acceptor pairings in CUFF.1493_From_wil_2_3087183_0 Examining donor-acceptor pairings in CUFF.915_From_can_0_3231205_0 Examining donor-acceptor pairings in CUFF.1139_From_ler_0_4211779_1 Examining donor-acceptor pairings in CUFF.1141_From_mt_0_4449890_0 Examining donor-acceptor pairings in CUFF.1607_From_zu_0_3255169_0 Found 41 potential island-end pairing junctions done Aligning 3305 microexon segments in 157 windows window 100 Checked 6610 segments against 157 windows for microexon junctions Found 9 potential microexon junctions -- microexon -- CUFF.949_From_can_0_3218459_0 88 169 + CUFF.949_From_can_0_3218459_0 93 169 + CUFF.941_From_bur_0_2025286_0 2192 2305 + CUFF.1605_From_zu_0_3257369_0 513 615 + CUFF.949_From_can_0_3218459_0 302 384 + CUFF.949_From_can_0_3218459_0 674 791 + CUFF.949_From_can_0_3218459_0 677 791 + CUFF.949_From_can_0_3218459_0 296 384 + CUFF.949_From_can_0_3218459_0 180 384 + -- done -- -- seg -- CUFF.1471_From_tsu_0_3212935_0 575 631 + CUFF.1471_From_tsu_0_3212935_0 581 636 + CUFF.1471_From_tsu_0_3212935_0 587 642 + CUFF.1471_From_tsu_0_3212935_0 589 642 + CUFF.1471_From_tsu_0_3212935_0 592 650 + CUFF.1471_From_tsu_0_3212935_0 597 651 - CUFF.913_From_can_0_3217045_0 208 262 + CUFF.913_From_can_0_3217045_0 210 270 - CUFF.913_From_can_0_3217045_0 210 275 - CUFF.913_From_can_0_3217045_0 212 274 + CUFF.913_From_can_0_3217045_0 213 270 - CUFF.913_From_can_0_3217045_0 213 275 - CUFF.913_From_can_0_3217045_0 217 270 + CUFF.913_From_can_0_3217045_0 231 287 - CUFF.949_From_can_0_3218459_0 74 171 + CUFF.949_From_can_0_3218459_0 79 153 - CUFF.949_From_can_0_3218459_0 79 169 + CUFF.949_From_can_0_3218459_0 81 171 - CUFF.949_From_can_0_3218459_0 86 171 + CUFF.949_From_can_0_3218459_0 88 153 - CUFF.949_From_can_0_3218459_0 88 169 + CUFF.949_From_can_0_3218459_0 93 153 - CUFF.949_From_can_0_3218459_0 93 169 + CUFF.949_From_can_0_3218459_0 97 169 + CUFF.949_From_can_0_3218459_0 101 171 + CUFF.949_From_can_0_3218459_0 277 382 + CUFF.949_From_can_0_3218459_0 282 361 + CUFF.949_From_can_0_3218459_0 282 393 - CUFF.949_From_can_0_3218459_0 284 377 - CUFF.949_From_can_0_3218459_0 284 382 - CUFF.949_From_can_0_3218459_0 292 359 + CUFF.949_From_can_0_3218459_0 292 361 + CUFF.949_From_can_0_3218459_0 292 384 + CUFF.949_From_can_0_3218459_0 296 359 + CUFF.949_From_can_0_3218459_0 296 361 + CUFF.949_From_can_0_3218459_0 296 384 + CUFF.949_From_can_0_3218459_0 296 393 - CUFF.949_From_can_0_3218459_0 299 382 + CUFF.949_From_can_0_3218459_0 302 359 + CUFF.949_From_can_0_3218459_0 302 361 + CUFF.949_From_can_0_3218459_0 302 384 + CUFF.949_From_can_0_3218459_0 302 393 - CUFF.949_From_can_0_3218459_0 306 359 + CUFF.949_From_can_0_3218459_0 306 361 + CUFF.949_From_can_0_3218459_0 306 384 + 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88 162 - CUFF.949_From_can_0_3218459_0 93 162 - CUFF.949_From_can_0_3218459_0 292 384 + CUFF.949_From_can_0_3218459_0 296 384 + CUFF.949_From_can_0_3218459_0 302 384 + CUFF.949_From_can_0_3218459_0 306 384 + CUFF.949_From_can_0_3218459_0 641 771 - CUFF.949_From_can_0_3218459_0 641 775 - CUFF.949_From_can_0_3218459_0 641 780 - CUFF.949_From_can_0_3218459_0 641 806 - CUFF.949_From_can_0_3218459_0 655 771 - CUFF.949_From_can_0_3218459_0 655 775 - CUFF.949_From_can_0_3218459_0 655 780 - CUFF.949_From_can_0_3218459_0 655 806 - CUFF.949_From_can_0_3218459_0 659 771 - CUFF.949_From_can_0_3218459_0 659 775 - CUFF.949_From_can_0_3218459_0 659 780 - CUFF.949_From_can_0_3218459_0 659 806 - CUFF.949_From_can_0_3218459_0 665 771 - CUFF.949_From_can_0_3218459_0 665 780 - CUFF.949_From_can_0_3218459_0 665 806 - CUFF.949_From_can_0_3218459_0 665 808 - CUFF.949_From_can_0_3218459_0 674 771 - CUFF.949_From_can_0_3218459_0 674 780 - CUFF.949_From_can_0_3218459_0 674 808 - CUFF.949_From_can_0_3218459_0 677 771 - CUFF.949_From_can_0_3218459_0 677 780 - CUFF.949_From_can_0_3218459_0 677 808 - CUFF.949_From_can_0_3218459_0 680 804 - CUFF.949_From_can_0_3218459_0 682 771 - CUFF.949_From_can_0_3218459_0 682 780 - CUFF.949_From_can_0_3218459_0 682 808 - CUFF.949_From_can_0_3218459_0 687 771 - CUFF.949_From_can_0_3218459_0 687 808 - CUFF.1007_From_edi_0_2888586_0 359 442 - CUFF.1007_From_edi_0_2888586_0 365 442 + CUFF.1007_From_edi_0_2888586_0 367 442 - CUFF.1007_From_edi_0_2888586_0 369 442 - CUFF.921_From_can_0_3233581_0 75 180 + CUFF.921_From_can_0_3233581_0 77 187 - CUFF.921_From_can_0_3233581_0 80 180 + CUFF.921_From_can_0_3233581_0 81 187 - CUFF.921_From_can_0_3233581_0 84 180 + CUFF.921_From_can_0_3233581_0 86 180 + CUFF.921_From_can_0_3233581_0 88 187 - CUFF.921_From_can_0_3233581_0 90 180 + CUFF.921_From_can_0_3233581_0 91 187 - CUFF.921_From_can_0_3233581_0 94 187 + CUFF.921_From_can_0_3233581_0 97 187 - CUFF.921_From_can_0_3233581_0 100 187 + CUFF.921_From_can_0_3233581_0 104 180 + CUFF.921_From_can_0_3233581_0 107 180 + CUFF.881_From_bur_0_1969548_0 58 150 + CUFF.881_From_bur_0_1969548_0 60 150 - CUFF.881_From_bur_0_1969548_0 62 150 + CUFF.881_From_bur_0_1969548_0 66 128 + CUFF.881_From_bur_0_1969548_0 66 134 + CUFF.881_From_bur_0_1969548_0 73 150 + CUFF.881_From_bur_0_1969548_0 75 150 + CUFF.881_From_bur_0_1969548_0 78 161 + CUFF.881_From_bur_0_1969548_0 83 161 - CUFF.1641_From_zu_0_3291057_0 154 234 - CUFF.1641_From_zu_0_3291057_0 165 227 + CUFF.1641_From_zu_0_3291057_0 171 229 + CUFF.1607_From_zu_0_3255169_0 645 876 - CUFF.1607_From_zu_0_3255169_0 648 876 - CUFF.1607_From_zu_0_3255169_0 652 876 - CUFF.1607_From_zu_0_3255169_0 657 876 - CUFF.1471_From_tsu_0_3212935_0 575 650 + CUFF.1471_From_tsu_0_3212935_0 581 658 + CUFF.949_From_can_0_3218459_0 79 177 - CUFF.949_From_can_0_3218459_0 88 177 - CUFF.949_From_can_0_3218459_0 93 177 - CUFF.949_From_can_0_3218459_0 641 775 - CUFF.949_From_can_0_3218459_0 641 780 - CUFF.949_From_can_0_3218459_0 641 806 - CUFF.949_From_can_0_3218459_0 641 808 - CUFF.949_From_can_0_3218459_0 655 775 - CUFF.949_From_can_0_3218459_0 655 780 - CUFF.949_From_can_0_3218459_0 655 806 - CUFF.949_From_can_0_3218459_0 655 808 - CUFF.949_From_can_0_3218459_0 659 775 - CUFF.949_From_can_0_3218459_0 659 780 - CUFF.949_From_can_0_3218459_0 659 806 - CUFF.949_From_can_0_3218459_0 659 808 - CUFF.949_From_can_0_3218459_0 665 775 - CUFF.949_From_can_0_3218459_0 665 806 - CUFF.949_From_can_0_3218459_0 665 808 - CUFF.949_From_can_0_3218459_0 665 811 - CUFF.949_From_can_0_3218459_0 674 775 - CUFF.949_From_can_0_3218459_0 674 806 - CUFF.949_From_can_0_3218459_0 674 811 - CUFF.949_From_can_0_3218459_0 677 775 - CUFF.949_From_can_0_3218459_0 677 806 - CUFF.949_From_can_0_3218459_0 677 811 - CUFF.949_From_can_0_3218459_0 682 775 - CUFF.949_From_can_0_3218459_0 682 806 - CUFF.949_From_can_0_3218459_0 682 811 - CUFF.949_From_can_0_3218459_0 687 775 - CUFF.949_From_can_0_3218459_0 687 811 - CUFF.881_From_bur_0_1969548_0 66 134 + CUFF.881_From_bur_0_1969548_0 66 147 + CUFF.881_From_bur_0_1969548_0 73 161 + CUFF.881_From_bur_0_1969548_0 75 161 + CUFF.1641_From_zu_0_3291057_0 154 236 - CUFF.1641_From_zu_0_3291057_0 165 229 + CUFF.1471_From_tsu_0_3212935_0 575 658 + CUFF.949_From_can_0_3218459_0 79 180 - CUFF.949_From_can_0_3218459_0 88 180 - CUFF.949_From_can_0_3218459_0 93 180 - CUFF.949_From_can_0_3218459_0 641 780 - CUFF.949_From_can_0_3218459_0 655 780 - CUFF.949_From_can_0_3218459_0 659 780 - CUFF.949_From_can_0_3218459_0 665 780 - CUFF.949_From_can_0_3218459_0 674 780 - CUFF.949_From_can_0_3218459_0 677 780 - CUFF.949_From_can_0_3218459_0 682 780 - CUFF.949_From_can_0_3218459_0 687 780 - CUFF.881_From_bur_0_1969548_0 66 147 + CUFF.881_From_bur_0_1969548_0 66 157 + CUFF.881_From_bur_0_1969548_0 66 157 + -- done -- -- cov -- CUFF.1329_From_sf_2_2642906_0 126 286 - CUFF.1265_From_po_0_3577252_0 280 416 - CUFF.1309_From_rsch_4_4307314_0 264 319 + CUFF.1267_From_no_0_3128142_0 871 1165 - CUFF.1215_From_oy_0_3162092_0 273 1112 - CUFF.1641_From_zu_0_3291057_0 154 241 - CUFF.943_From_ct_1_3247037_0 88 246 + CUFF.1605_From_zu_0_3257369_0 305 485 - CUFF.1007_From_edi_0_2888586_0 691 850 + CUFF.1053_From_kn_0_3819922_1 672 762 + CUFF.1421_From_tsu_0_3215821_0 505 620 - CUFF.1471_From_tsu_0_3212935_0 253 370 + CUFF.1007_From_edi_0_2888586_0 691 867 + CUFF.1471_From_tsu_0_3212935_0 123 372 + CUFF.1471_From_tsu_0_3212935_0 754 945 - CUFF.1561_From_wu_0_2827904_0 103 1780 - CUFF.1471_From_tsu_0_3212935_0 123 375 + CUFF.1585_From_wu_0_2837848_0 86 531 + CUFF.1215_From_oy_0_3162092_0 273 1536 - CUFF.1215_From_oy_0_3162092_0 561 1344 + CUFF.1177_From_no_0_3116640_0 598 931 - CUFF.915_From_can_0_3231205_0 99 535 - CUFF.1073_From_ler_0_4209589_1 123 881 + CUFF.1139_From_ler_0_4211779_1 364 994 + CUFF.1215_From_oy_0_3162092_0 561 1501 + CUFF.1177_From_no_0_3116640_0 235 902 - CUFF.941_From_bur_0_2025286_0 468 1303 + CUFF.1267_From_no_0_3128142_0 592 1722 + CUFF.1267_From_no_0_3128142_0 599 1722 + CUFF.1471_From_tsu_0_3212935_0 427 785 + CUFF.1215_From_oy_0_3162092_0 581 1504 + CUFF.1053_From_kn_0_3819922_1 100 574 + CUFF.1267_From_no_0_3128142_0 107 1330 + CUFF.1215_From_oy_0_3162092_0 561 1529 + CUFF.1267_From_no_0_3128142_0 424 1722 + CUFF.1215_From_oy_0_3162092_0 581 1558 + CUFF.1215_From_oy_0_3162092_0 258 1290 + CUFF.1585_From_wu_0_2837848_0 86 1276 + CUFF.1177_From_no_0_3116640_0 227 919 + CUFF.941_From_bur_0_2025286_0 381 1754 + CUFF.1471_From_tsu_0_3212935_0 207 884 + -- done -- -- buf -- -- done -- Reporting potential splice junctions...done Reported 405 total possible splices Reporting potential deletions... Reporting potential insertions...