nohup: ignoring input reference: ../novelgene.v2.fa Not strand specific tophat --num-threads 4 --mate-inner-dist 38 --mate-std-dev 40 --max-multihits 10 --coverage-search --microexon-search -o Can_0_direct2rna/ ../novelgene.v2 Can_0_direct2rna//Run33_lane1_Can_0_seedling.fastq.unmap_1.flt_1.fq [Wed May 25 16:32:47 2011] Beginning TopHat run (v1.2.0) ----------------------------------------------- [Wed May 25 16:32:47 2011] Preparing output location Can_0_direct2rna// [Wed May 25 16:32:47 2011] Checking for Bowtie index files [Wed May 25 16:32:47 2011] Checking for reference FASTA file [Wed May 25 16:32:47 2011] Checking for Bowtie Bowtie version: 0.12.7.0 [Wed May 25 16:32:47 2011] Checking for Samtools Samtools Version: 0.1.7 [Wed May 25 16:32:48 2011] Checking reads min read length: 82bp, max read length: 82bp format: fastq quality scale: phred33 (default) [Wed May 25 16:34:38 2011] Mapping reads against novelgene.v2 with Bowtie [Wed May 25 16:35:09 2011] Joining segment hits [Wed May 25 16:36:40 2011] Mapping reads against novelgene.v2 with Bowtie(1/3) [Wed May 25 16:37:06 2011] Mapping reads against novelgene.v2 with Bowtie(2/3) [Wed May 25 16:37:31 2011] Mapping reads against novelgene.v2 with Bowtie(3/3) [Wed May 25 16:37:59 2011] Searching for junctions via segment mapping [Wed May 25 16:41:41 2011] Retrieving sequences for splices [Wed May 25 16:41:41 2011] Indexing splices [Wed May 25 16:41:41 2011] Mapping reads against segment_juncs with Bowtie [Wed May 25 16:41:57 2011] Mapping reads against segment_juncs with Bowtie [Wed May 25 16:42:17 2011] Mapping reads against segment_juncs with Bowtie [Wed May 25 16:42:34 2011] Joining segment hits [Wed May 25 16:42:46 2011] Reporting output tracks ----------------------------------------------- Run complete [00:10:13 elapsed] [sam_header_read2] 221 sequences loaded. cufflinks -p 4 -o Can_0_direct2rna/ -r ../novelgene.v2.fa Can_0_direct2rna//accepted_hits.bam [16:43:34] Inspecting reads and determining fragment length distribution. > Processing Locus CUFF.1003_From_hi_0_2790034 [ ] 0 > Processing Locus CUFF.1007_From_edi_0_288858 [ ] 0 > Processing Locus CUFF.1008_From_kn_0_3525938 [ ] 0 > Processing Locus CUFF.1013_From_kn_0_3532396 [ ] 1 > Processing Locus CUFF.1015_From_hi_0_2966608 [ ] 1 > Processing Locus CUFF.1015_From_hi_0_2966608 [ ] 1 > Processing Locus CUFF.1017_From_kn_0_3566907 [ ] 2 > Processing Locus CUFF.1027_From_kn_0_3558357 [ ] 2 > Processing Locus CUFF.1049_From_ler_0_400212 [ ] 3 > Processing Locus CUFF.1055_From_ler_0_400477 [ ] 3 > Processing Locus CUFF.1061_From_ler_0_401653 [* ] 4 > Processing Locus CUFF.1073_From_ler_0_420958 [* ] 4 > Processing Locus CUFF.1081_From_mt_0_4099484 [* ] 4 > Processing Locus CUFF.1087_From_ler_0_421177 [* ] 5 > Processing Locus CUFF.1093_From_mt_0_4130072 [* ] 5 > Processing Locus CUFF.1095_From_mt_0_4131964 [* ] 6 > Processing Locus CUFF.1101_From_mt_0_4188374 [* ] 6 > Processing Locus CUFF.1113_From_mt_0_4206392 [* ] 7 > Processing Locus CUFF.1117_From_hi_0_2939638 [* ] 7 > Processing Locus CUFF.1119_From_hi_0_2939638 [** ] 8 > Processing Locus CUFF.1139_From_ler_0_421177 [** ] 8 > Processing Locus CUFF.1153_From_no_0_2923846 [** ] 9 > Processing Locus CUFF.1159_From_no_0_3088052 [** ] 9 > Processing Locus CUFF.1163_From_no_0_2951521 [** ] 9 > Processing Locus CUFF.1165_From_no_0_2959683 [** ] 10 > Processing Locus CUFF.1177_From_no_0_3116640 [** ] 10 > Processing Locus CUFF.1197_From_oy_0_3103794 [** ] 11 > Processing Locus CUFF.1207_From_po_0_3308932 [** ] 11 > Processing Locus CUFF.1209_From_po_0_3295404 [*** ] 12 > Processing Locus CUFF.1211_From_po_0_3269389 [*** ] 12 > Processing Locus CUFF.1213_From_po_0_3316390 [*** ] 13 > Processing Locus CUFF.1215_From_oy_0_3162092 [*** ] 13 > Processing Locus CUFF.1215_From_oy_0_3162092 [*** ] 13 > Processing Locus CUFF.1219_From_po_0_3319326 [*** ] 14 > Processing Locus CUFF.1223_From_po_0_3340213 [*** ] 14 > Processing Locus CUFF.1229_From_po_0_3339041 [*** ] 14 > Processing Locus CUFF.1253_From_po_0_3387411 [*** ] 15 > Processing Locus CUFF.1259_From_po_0_3402348 [*** ] 15 > Processing Locus CUFF.1265_From_po_0_3577252 [**** ] 16 > Processing Locus CUFF.1267_From_no_0_3128142 [**** ] 16 > Processing Locus CUFF.1275_From_po_0_3332479 [**** ] 17 > Processing Locus CUFF.1285_From_rsch_4_40850 [**** ] 17 > Processing Locus CUFF.1287_From_rsch_4_40994 [**** ] 18 > Processing Locus CUFF.1293_From_rsch_4_41076 [**** ] 18 > Processing Locus CUFF.1309_From_rsch_4_43073 [**** ] 19 > Processing Locus CUFF.1325_From_sf_2_2626132 [**** ] 19 > Processing Locus CUFF.1329_From_sf_2_2642906 [**** ] 19 > Processing Locus CUFF.1333_From_sf_2_2666154 [***** ] 20 > Processing Locus CUFF.1347_From_sf_2_2682779 [***** ] 20 > Processing Locus CUFF.1367_From_tsu_0_313513 [***** ] 21 > Processing Locus CUFF.1397_From_tsu_0_322801 [***** ] 21 > Processing Locus CUFF.1401_From_wil_2_305052 [***** ] 22 > Processing Locus CUFF.1409_From_wil_2_306622 [***** ] 22 > Processing Locus CUFF.1413_From_sf_2_2687786 [***** ] 23 > Processing Locus CUFF.1413_From_sf_2_2687786 [***** ] 23 > Processing Locus CUFF.1417_From_wil_2_307863 [***** ] 23 > Processing Locus CUFF.1421_From_tsu_0_321582 [***** ] 23 > Processing Locus CUFF.1423_From_wil_2_307221 [****** ] 24 > Processing Locus CUFF.1443_From_wil_2_305227 [****** ] 24 > Processing Locus CUFF.1453_From_ws_0_3185408 [****** ] 25 > Processing Locus CUFF.1459_From_ws_0_3182508 [****** ] 25 > Processing Locus CUFF.1463_From_ws_0_3190679 [****** ] 26 > Processing Locus CUFF.1473_From_ws_0_3293243 [****** ] 26 > Processing Locus CUFF.1475_From_ws_0_3313321 [****** ] 27 > Processing Locus CUFF.1489_From_ws_0_3372620 [****** ] 27 > Processing Locus CUFF.1491_From_ws_0_3373966 [******* ] 28 > Processing Locus CUFF.1497_From_ws_0_3380934 [******* ] 28 > Processing Locus CUFF.1507_From_wu_0_2587993 [******* ] 28 > Processing Locus CUFF.1513_From_ws_0_3381290 [******* ] 29 > Processing Locus CUFF.1515_From_wu_0_2648785 [******* ] 29 > Processing Locus CUFF.1519_From_wu_0_2597064 [******* ] 30 > Processing Locus CUFF.1523_From_wu_0_2638225 [******* ] 30 > Processing Locus CUFF.1527_From_wu_0_2675967 [******* ] 31 > Processing Locus CUFF.1529_From_wu_0_2655159 [******* ] 31 > Processing Locus CUFF.1531_From_ws_0_3340488 [******** ] 32 > Processing Locus CUFF.1539_From_wu_0_2702886 [******** ] 32 > Processing Locus CUFF.1561_From_wu_0_2827904 [******** ] 33 > Processing Locus CUFF.1565_From_zu_0_3075813 [******** ] 33 > Processing Locus CUFF.1569_From_zu_0_3035650 [******** ] 33 > Processing Locus CUFF.1573_From_zu_0_3065917 [******** ] 34 > Processing Locus CUFF.1577_From_wu_0_2832848 [******** ] 34 > Processing Locus CUFF.1583_From_wu_0_2829124 [******** ] 35 > Processing Locus CUFF.1585_From_wu_0_2837848 [******** ] 35 > Processing Locus CUFF.1585_From_wu_0_2837848 [******** ] 35 > Processing Locus CUFF.1595_From_zu_0_3238769 [********* ] 36 > Processing Locus CUFF.1597_From_zu_0_3181459 [********* ] 36 > Processing Locus CUFF.1599_From_zu_0_3200689 [********* ] 37 > Processing Locus CUFF.1603_From_zu_0_3242889 [********* ] 37 > Processing Locus CUFF.1605_From_zu_0_3257369 [********* ] 38 > Processing Locus CUFF.1607_From_zu_0_3255169 [********* ] 38 > Processing Locus CUFF.1607_From_zu_0_3255169 [********* ] 38 > Processing Locus CUFF.1609_From_zu_0_3260873 [********* ] 38 > Processing Locus CUFF.1611_From_zu_0_3255503 [********* ] 39 > Processing Locus CUFF.1617_From_zu_0_3278243 [********* ] 39 > Processing Locus CUFF.1619_From_zu_0_3280025 [********** ] 40 > Processing Locus CUFF.1619_From_zu_0_3280025 [********** ] 40 > Processing Locus CUFF.1631_From_zu_0_3277661 [********** ] 40 > Processing Locus CUFF.1635_From_zu_0_3263539 [********** ] 41 > Processing Locus CUFF.1637_From_zu_0_3277661 [********** ] 41 > Processing Locus CUFF.1639_From_zu_0_3291057 [********** ] 42 > Processing Locus CUFF.1641_From_zu_0_3291057 [********** ] 42 > Processing Locus CUFF.1649_From_zu_0_3082201 [********** ] 42 > Processing Locus CUFF.871_From_bur_0_2012810 [********** ] 43 > Processing Locus CUFF.881_From_bur_0_1969548 [********** ] 43 > Processing Locus CUFF.901_From_can_0_3094988 [*********** ] 44 > Processing Locus CUFF.907_From_can_0_3122480 [*********** ] 44 > Processing Locus CUFF.909_From_can_0_3223655 [*********** ] 45 > Processing Locus CUFF.909_From_can_0_3223655 [*********** ] 45 > Processing Locus CUFF.911_From_can_0_3230893 [*********** ] 45 > Processing Locus CUFF.913_From_can_0_3217045 [*********** ] 46 > Processing Locus CUFF.915_From_can_0_3231205 [*********** ] 46 > Processing Locus CUFF.919_From_can_0_3258779 [*********** ] 47 > Processing Locus CUFF.921_From_can_0_3233581 [*********** ] 47 > Processing Locus CUFF.937_From_can_0_3239881 [*********** ] 47 > Processing Locus CUFF.941_From_bur_0_2025286 [************ ] 48 > Processing Locus CUFF.943_From_ct_1_3247037_ [************ ] 48 > Processing Locus CUFF.949_From_can_0_3218459 [************ ] 49 > Processing Locus CUFF.967_From_edi_0_2887084 [************ ] 49 > Processing Locus CUFF.969_From_edi_0_2888616 [************ ] 50 > Processing Locus CUFF.973_From_edi_0_2871668 [************ ] 50 > Processing Locus CUFF.975_From_edi_0_2902016 [************ ] 51 > Processing Locus CUFF.983_From_ct_1_3241157_ [************ ] 51 > Processing Locus CUFF.997_From_edi_0_2934714 [************* ] 52 > Processing Locus CUFF.997_From_edi_0_2934714 [************* ] 52 > Processed 124 loci. [*************************] 100% > Map Properties: > Total Map Mass: 20409.54 > Read Type: 82bp single-end > Fragment Length Distribution: Gaussian (default) > Estimated Mean: 211.09 > Estimated Std Dev: 69.49 [16:43:34] Assembling transcripts and estimating abundances. > Processing Locus CUFF.1003_From_hi_0_2790034%" [ ] > Processing Locus CUFF.1007_From_edi_0_288858%" [ ] > Processing Locus CUFF.1008_From_kn_0_3525938%" [ ] > Processing Locus CUFF.1013_From_kn_0_3532396%" [ ] > Processing Locus CUFF.1015_From_hi_0_2966608%" [ ] > Processing Locus CUFF.1015_From_hi_0_2966608%" [* ] > Processing Locus CUFF.1017_From_kn_0_3566907%" [* ] > Processing Locus CUFF.1027_From_kn_0_3558357%" [* ] > Processing Locus CUFF.1049_From_ler_0_400212%" [* ] > Processing Locus CUFF.1055_From_ler_0_400477%" [* ] > Processing Locus CUFF.1061_From_ler_0_401653%" [** ] > Processing Locus CUFF.1073_From_ler_0_420958%" [** ] > Processing Locus CUFF.1081_From_mt_0_4099484%" [** ] > Processing Locus CUFF.1087_From_ler_0_421177%" [** ] > Processing Locus CUFF.1093_From_mt_0_4130072%" [** ] > Processing Locus CUFF.1095_From_mt_0_4131964%" [*** ] > Processing Locus CUFF.1101_From_mt_0_4188374%" [*** ] > Processing Locus CUFF.1113_From_mt_0_4206392%" [*** ] > Processing Locus CUFF.1117_From_hi_0_2939638%" [*** ] > Processing Locus CUFF.1119_From_hi_0_2939638%" [*** ] > Processing Locus CUFF.1139_From_ler_0_421177%" [**** ] > Processing Locus CUFF.1153_From_no_0_2923846%" [**** ] > Processing Locus CUFF.1159_From_no_0_3088052%" [**** ] > Processing Locus CUFF.1163_From_no_0_2951521%" [**** ] > Processing Locus CUFF.1165_From_no_0_2959683%" [**** ] > Processing Locus CUFF.1177_From_no_0_3116640%" [***** ] > Processing Locus CUFF.1197_From_oy_0_3103794%" [***** ] > Processing Locus CUFF.1207_From_po_0_3308932%" [***** ] > Processing Locus CUFF.1209_From_po_0_3295404%" [***** ] > Processing Locus CUFF.1211_From_po_0_3269389%" [***** ] > Processing Locus CUFF.1213_From_po_0_3316390%" [****** ] > Processing Locus CUFF.1215_From_oy_0_3162092%" [****** ] > Processing Locus CUFF.1215_From_oy_0_3162092%" [****** ] > Processing Locus CUFF.1219_From_po_0_3319326%" [****** ] > Processing Locus CUFF.1223_From_po_0_3340213%" [****** ] > Processing Locus CUFF.1229_From_po_0_3339041%" [******* ] > Processing Locus CUFF.1253_From_po_0_3387411%" [******* ] > Processing Locus CUFF.1259_From_po_0_3402348%" [******* ] > Processing Locus CUFF.1265_From_po_0_3577252%" [******* ] > Processing Locus CUFF.1267_From_no_0_3128142%" [******* ] > Processing Locus CUFF.1275_From_po_0_3332479%" [******** ] > Processing Locus CUFF.1285_From_rsch_4_40850%" [******** ] > Processing Locus CUFF.1287_From_rsch_4_40994%" [******** ] > Processing Locus CUFF.1293_From_rsch_4_41076%" [******** ] > Processing Locus CUFF.1309_From_rsch_4_43073%" [******** ] > Processing Locus CUFF.1325_From_sf_2_2626132%" [********* ] > Processing Locus CUFF.1329_From_sf_2_2642906%" [********* ] > Processing Locus CUFF.1333_From_sf_2_2666154%" [********* ] > Processing Locus CUFF.1347_From_sf_2_2682779%" [********* ] > Processing Locus CUFF.1367_From_tsu_0_313513%" [********* ] > Processing Locus CUFF.1397_From_tsu_0_322801%" [********** ] > Processing Locus CUFF.1401_From_wil_2_305052%" [********** ] > Processing Locus CUFF.1409_From_wil_2_306622%" [********** ] > Processing Locus CUFF.1413_From_sf_2_2687786%" [********** ] > Processing Locus CUFF.1413_From_sf_2_2687786%" [********** ] > Processing Locus CUFF.1417_From_wil_2_307863%" [*********** ] > Processing Locus CUFF.1421_From_tsu_0_321582%" [*********** ] > Processing Locus CUFF.1423_From_wil_2_307221%" [*********** ] > Processing Locus CUFF.1443_From_wil_2_305227%" [*********** ] > Processing Locus CUFF.1453_From_ws_0_3185408%" [*********** ] > Processing Locus CUFF.1459_From_ws_0_3182508%" [************ ] > Processing Locus CUFF.1463_From_ws_0_3190679%" [************ ] > Processing Locus CUFF.1473_From_ws_0_3293243%" [************ ] > Processing Locus CUFF.1475_From_ws_0_3313321%" [************ ] > Processing Locus CUFF.1489_From_ws_0_3372620%" [************ ] > Processing Locus CUFF.1491_From_ws_0_3373966%" [************* ] > Processing Locus CUFF.1497_From_ws_0_3380934%" [************* ] > Processing Locus CUFF.1507_From_wu_0_2587993%" [************* ] > Processing Locus CUFF.1513_From_ws_0_3381290%" [************* ] > Processing Locus CUFF.1515_From_wu_0_2648785%" [************* ] > Processing Locus CUFF.1519_From_wu_0_2597064%" [************** ] > Processing Locus CUFF.1523_From_wu_0_2638225%" [************** ] > Processing Locus CUFF.1527_From_wu_0_2675967%" [************** ] > Processing Locus CUFF.1529_From_wu_0_2655159%" [************** ] > Processing Locus CUFF.1531_From_ws_0_3340488%" [************** ] > Processing Locus CUFF.1539_From_wu_0_2702886%" [*************** ] > Processing Locus CUFF.1561_From_wu_0_2827904%" [*************** ] > Processing Locus CUFF.1565_From_zu_0_3075813%" [*************** ] > Processing Locus CUFF.1569_From_zu_0_3035650%" [*************** ] > Processing Locus CUFF.1573_From_zu_0_3065917%" [*************** ] > Processing Locus CUFF.1577_From_wu_0_2832848%" [**************** ] > Processing Locus CUFF.1583_From_wu_0_2829124%" [**************** ] > Processing Locus CUFF.1585_From_wu_0_2837848%" [**************** ] > Processing Locus CUFF.1585_From_wu_0_2837848%" [**************** ] > Processing Locus CUFF.1595_From_zu_0_3238769%" [**************** ] > Processing Locus CUFF.1597_From_zu_0_3181459%" [***************** ] > Processing Locus CUFF.1599_From_zu_0_3200689%" [***************** ] > Processing Locus CUFF.1603_From_zu_0_3242889%" [***************** ] > Processing Locus CUFF.1605_From_zu_0_3257369%" [***************** ] > Processing Locus CUFF.1607_From_zu_0_3255169%" [***************** ] > Processing Locus CUFF.1607_From_zu_0_3255169%" [****************** ] > Processing Locus CUFF.1609_From_zu_0_3260873%" [****************** ] > Processing Locus CUFF.1611_From_zu_0_3255503%" [****************** ] > Processing Locus CUFF.1617_From_zu_0_3278243%" [****************** ] > Processing Locus CUFF.1619_From_zu_0_3280025%" [****************** ] > Processing Locus CUFF.1619_From_zu_0_3280025%" [******************* ] > Processing Locus CUFF.1631_From_zu_0_3277661%" [******************* ] > Processing Locus CUFF.1635_From_zu_0_3263539%" [******************* ] > Processing Locus CUFF.1637_From_zu_0_3277661%" [******************* ] > Processing Locus CUFF.1639_From_zu_0_3291057%" [******************* ] > Processing Locus CUFF.1641_From_zu_0_3291057%" [******************** ] > Processing Locus CUFF.1649_From_zu_0_3082201%" [******************** ] > Processing Locus CUFF.871_From_bur_0_2012810%" [******************** ] > Processing Locus CUFF.881_From_bur_0_1969548%" [******************** ] > Processing Locus CUFF.901_From_can_0_3094988%" [******************** ] > Processing Locus CUFF.907_From_can_0_3122480%" [********************* ] > Processing Locus CUFF.909_From_can_0_3223655%" [********************* ] > Processing Locus CUFF.909_From_can_0_3223655%" [********************* ] > Processing Locus CUFF.911_From_can_0_3230893%" [********************* ] > Processing Locus CUFF.913_From_can_0_3217045%" [********************* ] > Processing Locus CUFF.915_From_can_0_3231205%" [********************** ] > Processing Locus CUFF.919_From_can_0_3258779%" [********************** ] > Processing Locus CUFF.921_From_can_0_3233581%" [********************** ] > Processing Locus CUFF.937_From_can_0_3239881%" [********************** ] > Processing Locus CUFF.941_From_bur_0_2025286%" [********************** ] > Processing Locus CUFF.943_From_ct_1_3247037_%" [*********************** ] > Processing Locus CUFF.949_From_can_0_3218459%" [*********************** ] > Processing Locus CUFF.967_From_edi_0_2887084%" [*********************** ] > Processing Locus CUFF.969_From_edi_0_2888616%" [*********************** ] > Processing Locus CUFF.973_From_edi_0_2871668%" [*********************** ] > Processing Locus CUFF.975_From_edi_0_2902016%" [************************ ] > Processing Locus CUFF.983_From_ct_1_3241157_%" [************************ ] > Processing Locus CUFF.997_From_edi_0_2934714%" [************************ ] > Processing Locus CUFF.997_From_edi_0_2934714%" [************************ ] > Processed 124 loci. [*************************] 100% [16:43:34] Loading reference and sequence. [16:43:34] Learning bias parameters. > Processed 36788090 loci. p*************************`Áÿ 100% [16:43:34] Re-estimating abundances with bias correction. > Processing Locus CUFF.1003_From_hi_0_2790034 [ ] 0% > Processing Locus CUFF.1007_From_edi_0_288858 [ ] 0% > Processing Locus CUFF.1008_From_kn_0_3525938 [ ] 1% > Processing Locus CUFF.1013_From_kn_0_3532396 [ ] 2% > Processing Locus CUFF.1017_From_kn_0_3566907 [ ] 3% > Processing Locus CUFF.1027_From_kn_0_3558357 [* ] 4% > Processing Locus CUFF.1049_From_ler_0_400212 [* ] 4% > Processing Locus CUFF.1055_From_ler_0_400477 [* ] 5% > Processing Locus CUFF.1061_From_ler_0_401653 [* ] 6% > Processing Locus CUFF.1073_From_ler_0_420958 [* ] 7% > Processing Locus CUFF.1087_From_ler_0_421177 [** ] 8% > Processing Locus CUFF.1093_From_mt_0_4130072 [** ] 8% > Processing Locus CUFF.1101_From_mt_0_4188374 [** ] 9% > Processing Locus CUFF.1113_From_mt_0_4206392 [** ] 10% > Processing Locus CUFF.1117_From_hi_0_2939638 [** ] 11% > Processing Locus CUFF.1139_From_ler_0_421177 [*** ] 12% > Processing Locus CUFF.1153_From_no_0_2923846 [*** ] 12% > Processing Locus CUFF.1163_From_no_0_2951521 [*** ] 13% > Processing Locus CUFF.1165_From_no_0_2959683 [*** ] 14% > Processing Locus CUFF.1177_From_no_0_3116640 [*** ] 15% > Processing Locus CUFF.1197_From_oy_0_3103794 [**** ] 16% > Processing Locus CUFF.1207_From_po_0_3308932 [**** ] 16% > Processing Locus CUFF.1211_From_po_0_3269389 [**** ] 17% > Processing Locus CUFF.1253_From_po_0_3387411 [**** ] 18% > Processing Locus CUFF.1259_From_po_0_3402348 [**** ] 19% > Processing Locus CUFF.1265_From_po_0_3577252 [***** ] 20% > Processing Locus CUFF.1267_From_no_0_3128142 [***** ] 20% > Processing Locus CUFF.1275_From_po_0_3332479 [***** ] 21% > Processing Locus CUFF.1287_From_rsch_4_40994 [***** ] 22% > Processing Locus CUFF.1309_From_rsch_4_43073 [***** ] 23% > Processing Locus CUFF.1325_From_sf_2_2626132 [****** ] 24% > Processing Locus CUFF.1329_From_sf_2_2642906 [****** ] 25% > Processing Locus CUFF.1333_From_sf_2_2666154 [****** ] 25% > Processing Locus CUFF.1347_From_sf_2_2682779 [****** ] 26% > Processing Locus CUFF.1367_From_tsu_0_313513 [****** ] 27% > Processing Locus CUFF.1397_From_tsu_0_322801 [******* ] 28% > Processing Locus CUFF.1401_From_wil_2_305052 [******* ] 29% > Processing Locus CUFF.1417_From_wil_2_307863 [******* ] 29% > Processing Locus CUFF.1421_From_tsu_0_321582 [******* ] 30% > Processing Locus CUFF.1423_From_wil_2_307221 [******* ] 31% > Processing Locus CUFF.1443_From_wil_2_305227 [******** ] 32% > Processing Locus CUFF.1453_From_ws_0_3185408 [******** ] 33% > Processing Locus CUFF.1459_From_ws_0_3182508 [******** ] 33% > Processing Locus CUFF.1473_From_ws_0_3293243 [******** ] 34% > Processing Locus CUFF.1475_From_ws_0_3313321 [******** ] 35% > Processing Locus CUFF.1491_From_ws_0_3373966 [********* ] 36% > Processing Locus CUFF.1507_From_wu_0_2587993 [********* ] 37% > Processing Locus CUFF.1513_From_ws_0_3381290 [********* ] 37% > Processing Locus CUFF.1527_From_wu_0_2675967 [********* ] 38% > Processing Locus CUFF.1531_From_ws_0_3340488 [********* ] 39% > Processing Locus CUFF.1539_From_wu_0_2702886 [********** ] 40% > Processing Locus CUFF.1561_From_wu_0_2827904 [********** ] 41% > Processing Locus CUFF.1565_From_zu_0_3075813 [********** ] 41% > Processing Locus CUFF.1569_From_zu_0_3035650 [********** ] 42% > Processing Locus CUFF.1583_From_wu_0_2829124 [********** ] 43% > Processing Locus CUFF.1585_From_wu_0_2837848 [*********** ] 44% > Processing Locus CUFF.1585_From_wu_0_2837848 [*********** ] 45% > Processing Locus CUFF.1595_From_zu_0_3238769 [*********** ] 45% > Processing Locus CUFF.1597_From_zu_0_3181459 [*********** ] 46% > Processing Locus CUFF.1599_From_zu_0_3200689 [*********** ] 47% > Processing Locus CUFF.1603_From_zu_0_3242889 [************ ] 48% > Processing Locus CUFF.1605_From_zu_0_3257369 [************ ] 49% > Processing Locus CUFF.1607_From_zu_0_3255169 [************ ] 50% > Processing Locus CUFF.1609_From_zu_0_3260873 [************ ] 50% > Processing Locus CUFF.1611_From_zu_0_3255503 [************ ] 51% > Processing Locus CUFF.1617_From_zu_0_3278243 [************* ] 52% > Processing Locus CUFF.1631_From_zu_0_3277661 [************* ] 53% > Processing Locus CUFF.1635_From_zu_0_3263539 [************* ] 54% > Processing Locus CUFF.1637_From_zu_0_3277661 [************* ] 54% > Processing Locus CUFF.1639_From_zu_0_3291057 [************* ] 55% > Processing Locus CUFF.1641_From_zu_0_3291057 [************** ] 56% > Processing Locus CUFF.1649_From_zu_0_3082201 [************** ] 57% > Processing Locus CUFF.871_From_bur_0_2012810 [************** ] 58% > Processing Locus CUFF.881_From_bur_0_1969548 [************** ] 58% > Processing Locus CUFF.901_From_can_0_3094988 [************** ] 59% > Processing Locus CUFF.907_From_can_0_3122480 [*************** ] 60% > Processing Locus CUFF.909_From_can_0_3223655 [*************** ] 61% > Processing Locus CUFF.911_From_can_0_3230893 [*************** ] 62% > Processing Locus CUFF.913_From_can_0_3217045 [*************** ] 62% > Processing Locus CUFF.915_From_can_0_3231205 [*************** ] 63% > Processing Locus CUFF.919_From_can_0_3258779 [**************** ] 64% > Processing Locus CUFF.921_From_can_0_3233581 [**************** ] 65% > Processing Locus CUFF.937_From_can_0_3239881 [**************** ] 66% > Processing Locus CUFF.941_From_bur_0_2025286 [**************** ] 66% > Processing Locus CUFF.943_From_ct_1_3247037_ [**************** ] 67% > Processing Locus CUFF.949_From_can_0_3218459 [***************** ] 68% > Processing Locus CUFF.969_From_edi_0_2888616 [***************** ] 69% > Processing Locus CUFF.973_From_edi_0_2871668 [***************** ] 70% > Processing Locus CUFF.983_From_ct_1_3241157_ [***************** ] 70% > Processing Locus CUFF.997_From_edi_0_2934714 [***************** ] 71% > Processed 90 loci. [*************************] 100%