tophat_reports v1.1.4 (1709)
---------------------------------------
[samopen] SAM header is present: 236 sequences.
SQ: CUFF.523_From_bur_0_1804399_0 - 113
SQ: CUFF.525_From_bur_0_1863298_0 - 130
SQ: CUFF.527_From_bur_0_1967596_0 - 420
SQ: CUFF.529_From_bur_0_1873494_0 - 187
SQ: CUFF.531_From_bur_0_1868430_0 - 118
SQ: CUFF.533_From_bur_0_2020452_0 - 579
SQ: CUFF.535_From_bur_0_1969548_0 - 679
SQ: CUFF.537_From_bur_0_1999718_0 - 899
SQ: CUFF.539_From_bur_0_2021834_0 - 836
SQ: CUFF.541_From_can_0_3059433_0 - 138
SQ: CUFF.543_From_can_0_3017860_0 - 111
SQ: CUFF.545_From_bur_0_1856286_0 - 157
SQ: CUFF.547_From_bur_0_2032354_0 - 1478
SQ: CUFF.549_From_can_0_3216099_0 - 805
SQ: CUFF.551_From_can_0_3122480_0 - 176
SQ: CUFF.553_From_can_0_3223655_0 - 647
SQ: CUFF.555_From_can_0_3217045_0 - 475
SQ: CUFF.557_From_can_0_3234869_1 - 845
SQ: CUFF.559_From_can_0_3231205_0 - 887
SQ: CUFF.561_From_can_0_3189753_0 - 205
SQ: CUFF.563_From_bur_0_2020452_0 - 1579
SQ: CUFF.565_From_can_0_3257137_1 - 144
SQ: CUFF.567_From_can_0_3258779_0 - 773
SQ: CUFF.569_From_can_0_3263637_0 - 276
SQ: CUFF.571_From_can_0_3076940_0 - 142
SQ: CUFF.573_From_can_0_3233581_0 - 207
SQ: CUFF.575_From_ct_1_3082021_0 - 129
SQ: CUFF.577_From_ct_1_3125173_0 - 159
SQ: CUFF.579_From_ct_1_3133451_0 - 173
SQ: CUFF.581_From_can_0_3218459_0 - 900
SQ: CUFF.583_From_ct_1_3302721_0 - 429
SQ: CUFF.585_From_ct_1_3247037_0 - 525
SQ: CUFF.587_From_ct_1_3277323_0 - 1232
SQ: CUFF.589_From_edi_0_2723255_0 - 138
SQ: CUFF.591_From_can_0_3239881_0 - 1061
SQ: CUFF.593_From_can_0_3270131_0 - 1733
SQ: CUFF.595_From_ct_1_3302721_0 - 378
SQ: CUFF.597_From_edi_0_2759827_0 - 172
SQ: CUFF.599_From_edi_0_2744702_0 - 158
SQ: CUFF.601_From_edi_0_2934714_0 - 568
SQ: CUFF.603_From_bur_0_2025286_0 - 2457
SQ: CUFF.604_From_edi_0_2934714_0 - 826
SQ: CUFF.607_From_edi_0_2891226_0 - 1093
SQ: CUFF.609_From_hi_0_2755116_0 - 85
SQ: CUFF.611_From_edi_0_2921730_0 - 476
SQ: CUFF.613_From_hi_0_2773206_0 - 158
SQ: CUFF.615_From_edi_0_2932438_0 - 287
SQ: CUFF.617_From_edi_0_2918156_0 - 344
SQ: CUFF.619_From_edi_0_2871668_0 - 525
SQ: CUFF.621_From_edi_0_2934714_0 - 3346
SQ: CUFF.623_From_hi_0_2778596_0 - 168
SQ: CUFF.625_From_hi_0_2964064_0 - 1173
SQ: CUFF.627_From_edi_0_2889434_0 - 919
SQ: CUFF.629_From_kn_0_3594465_0 - 156
SQ: CUFF.631_From_hi_0_2959094_0 - 676
SQ: CUFF.633_From_hi_0_2959094_0 - 581
SQ: CUFF.635_From_ct_1_3241157_0 - 612
SQ: CUFF.637_From_kn_0_3626969_0 - 191
SQ: CUFF.639_From_hi_0_2916184_0 - 533
SQ: CUFF.641_From_kn_0_3605300_0 - 167
SQ: CUFF.643_From_kn_0_3799876_0 - 1476
SQ: CUFF.645_From_edi_0_2888586_0 - 1045
SQ: CUFF.647_From_kn_0_3802200_0 - 745
SQ: CUFF.649_From_kn_0_3617271_0 - 179
SQ: CUFF.651_From_ler_0_3967940_0 - 131
SQ: CUFF.653_From_kn_0_3751597_0 - 544
SQ: CUFF.655_From_hi_0_2795398_0 - 191
SQ: CUFF.657_From_ler_0_3998132_0 - 115
SQ: CUFF.659_From_ler_0_4153595_0 - 431
SQ: CUFF.661_From_kn_0_3819922_1 - 2042
SQ: CUFF.663_From_kn_0_3613403_0 - 176
SQ: CUFF.665_From_hi_0_2939638_0 - 445
SQ: CUFF.666_From_ler_0_4004770_0 - 167
SQ: CUFF.669_From_ler_0_4225073_0 - 448
SQ: CUFF.671_From_edi_0_2859720_0 - 409
SQ: CUFF.673_From_ler_0_4224097_0 - 937
SQ: CUFF.675_From_mt_0_4213448_0 - 180
SQ: CUFF.677_From_ct_1_3133995_0 - 195
SQ: CUFF.679_From_ler_0_3998410_0 - 164
SQ: CUFF.681_From_mt_0_4399784_0 - 210
SQ: CUFF.683_From_ler_0_4165287_0 - 739
SQ: CUFF.685_From_mt_0_4231054_0 - 198
SQ: CUFF.687_From_mt_0_4230874_0 - 181
SQ: CUFF.689_From_ler_0_4018856_0 - 189
SQ: CUFF.691_From_hi_0_2961678_0 - 1101
SQ: CUFF.693_From_no_0_2934639_0 - 140
SQ: CUFF.695_From_mt_0_4217716_0 - 116
SQ: CUFF.697_From_mt_0_4229662_0 - 197
SQ: CUFF.699_From_no_0_2905273_0 - 123
SQ: CUFF.701_From_no_0_2951521_0 - 154
SQ: CUFF.703_From_no_0_2885444_0 - 111
SQ: CUFF.705_From_no_0_3113578_1 - 297
SQ: CUFF.707_From_no_0_2959683_0 - 182
SQ: CUFF.709_From_no_0_3101262_0 - 708
SQ: CUFF.711_From_no_0_3088052_0 - 953
SQ: CUFF.713_From_no_0_3116320_0 - 2102
SQ: CUFF.715_From_oy_0_3098144_0 - 333
SQ: CUFF.717_From_oy_0_2966542_0 - 101
SQ: CUFF.719_From_oy_0_2936927_0 - 116
SQ: CUFF.721_From_no_0_3120392_0 - 2344
SQ: CUFF.723_From_po_0_3306688_0 - 109
SQ: CUFF.725_From_no_0_3116640_0 - 1188
SQ: CUFF.727_From_hi_0_2953648_0 - 1321
SQ: CUFF.729_From_oy_0_3001818_0 - 134
SQ: CUFF.731_From_po_0_3324652_0 - 132
SQ: CUFF.733_From_no_0_2956652_0 - 178
SQ: CUFF.735_From_po_0_3293868_0 - 117
SQ: CUFF.737_From_ct_1_3132277_0 - 177
SQ: CUFF.739_From_po_0_3340213_0 - 137
SQ: CUFF.741_From_po_0_3382155_0 - 172
SQ: CUFF.743_From_po_0_3330421_0 - 135
SQ: CUFF.745_From_po_0_3507160_0 - 424
SQ: CUFF.747_From_po_0_3299272_0 - 119
SQ: CUFF.749_From_oy_0_3162092_0 - 1655
SQ: CUFF.751_From_rsch_4_4034850_0 - 102
SQ: CUFF.753_From_oy_0_3121110_0 - 510
SQ: CUFF.755_From_mt_0_4193196_0 - 166
SQ: CUFF.757_From_po_0_3372769_0 - 165
SQ: CUFF.759_From_no_0_2936769_0 - 152
SQ: CUFF.761_From_po_0_3606391_1 - 869
SQ: CUFF.763_From_rsch_4_4032032_0 - 92
SQ: CUFF.765_From_rsch_4_4110791_0 - 150
SQ: CUFF.767_From_rsch_4_4118145_0 - 165
SQ: CUFF.769_From_rsch_4_4107621_0 - 153
SQ: CUFF.771_From_po_0_3332479_0 - 136
SQ: CUFF.773_From_po_0_3606391_0 - 1759
SQ: CUFF.775_From_rsch_4_4091241_0 - 139
SQ: CUFF.777_From_rsch_4_4085063_0 - 128
SQ: CUFF.779_From_rsch_4_4214541_0 - 234
SQ: CUFF.781_From_rsch_4_4277566_0 - 103
SQ: CUFF.783_From_oy_0_2965192_0 - 135
SQ: CUFF.785_From_no_0_3128142_0 - 2113
SQ: CUFF.787_From_rsch_4_4277566_0 - 218
SQ: CUFF.789_From_rsch_4_4275442_0 - 618
SQ: CUFF.791_From_rsch_4_4255532_0 - 287
SQ: CUFF.793_From_sf_2_2504999_0 - 141
SQ: CUFF.795_From_rsch_4_4297142_0 - 274
SQ: CUFF.797_From_sf_2_2676583_0 - 947
SQ: CUFF.799_From_sf_2_2662232_0 - 104
SQ: CUFF.801_From_sf_2_2532172_0 - 180
SQ: CUFF.803_From_po_0_3573778_0 - 681
SQ: CUFF.805_From_sf_2_2486157_0 - 128
SQ: CUFF.807_From_sf_2_2488391_0 - 129
SQ: CUFF.809_From_sf_2_2682779_0 - 798
SQ: CUFF.811_From_sf_2_2459023_0 - 109
SQ: CUFF.813_From_tsu_0_2970253_0 - 100
SQ: CUFF.815_From_sf_2_2671632_0 - 986
SQ: CUFF.817_From_sf_2_2524453_0 - 169
SQ: CUFF.819_From_tsu_0_3036945_0 - 150
SQ: CUFF.821_From_tsu_0_3175121_0 - 426
SQ: CUFF.823_From_tsu_0_3175121_0 - 141
SQ: CUFF.825_From_sf_2_2700286_0 - 2492
SQ: CUFF.827_From_rsch_4_4277288_0 - 759
SQ: CUFF.829_From_tsu_0_3135135_0 - 210
SQ: CUFF.831_From_sf_2_2687774_0 - 382
SQ: CUFF.833_From_tsu_0_3208747_0 - 392
SQ: CUFF.835_From_tsu_0_3211741_0 - 785
SQ: CUFF.837_From_tsu_0_3215671_0 - 844
SQ: CUFF.839_From_sf_2_2680171_0 - 1170
SQ: CUFF.841_From_tsu_0_3243273_0 - 512
SQ: CUFF.843_From_rsch_4_4292194_1 - 1135
SQ: CUFF.845_From_tsu_0_3243273_0 - 1637
SQ: CUFF.847_From_tsu_0_3242833_1 - 782
SQ: CUFF.849_From_tsu_0_3222297_0 - 456
SQ: CUFF.851_From_wil_2_2906137_0 - 142
SQ: CUFF.853_From_wil_2_2920529_0 - 183
SQ: CUFF.855_From_wil_2_2915899_0 - 168
SQ: CUFF.857_From_sf_2_2653966_0 - 695
SQ: CUFF.859_From_tsu_0_3215737_0 - 687
SQ: CUFF.861_From_mt_0_4528444_1 - 647
SQ: CUFF.863_From_wil_2_3008461_1 - 358
SQ: CUFF.865_From_wil_2_2892485_0 - 115
SQ: CUFF.867_From_wil_2_2945095_0 - 202
SQ: CUFF.869_From_sf_2_2701328_0 - 728
SQ: CUFF.871_From_rsch_4_4266550_0 - 1153
SQ: CUFF.873_From_wil_2_3050523_0 - 273
SQ: CUFF.875_From_wil_2_3052951_0 - 908
SQ: CUFF.877_From_sf_2_2687786_0 - 2198
SQ: CUFF.879_From_rsch_4_4055167_0 - 111
SQ: CUFF.881_From_wil_2_2925323_0 - 195
SQ: CUFF.883_From_wil_2_3066229_0 - 445
SQ: CUFF.885_From_wil_2_3063473_0 - 756
SQ: CUFF.887_From_wil_2_3054893_0 - 554
SQ: CUFF.889_From_ws_0_3181530_0 - 180
SQ: CUFF.891_From_wil_2_3079625_0 - 515
SQ: CUFF.893_From_ws_0_3190679_0 - 194
SQ: CUFF.895_From_tsu_0_3215821_0 - 879
SQ: CUFF.897_From_ws_0_3298283_0 - 523
SQ: CUFF.899_From_ws_0_3190963_0 - 167
SQ: CUFF.901_From_wil_2_3088151_0 - 1407
SQ: CUFF.903_From_wil_2_3089541_0 - 443
SQ: CUFF.905_From_ws_0_3339092_0 - 655
SQ: CUFF.907_From_ws_0_3182508_0 - 183
SQ: CUFF.909_From_wil_2_3052273_0 - 668
SQ: CUFF.911_From_wil_2_3068737_0 - 1058
SQ: CUFF.913_From_wil_2_2834553_0 - 104
SQ: CUFF.915_From_ws_0_3349444_1 - 177
SQ: CUFF.917_From_ws_0_3371988_0 - 648
SQ: CUFF.919_From_ws_0_3347582_0 - 1310
SQ: CUFF.921_From_wil_2_3077447_0 - 1243
SQ: CUFF.923_From_ws_0_3382728_0 - 596
SQ: CUFF.925_From_ws_0_3371988_0 - 323
SQ: CUFF.927_From_wu_0_2655481_0 - 147
SQ: CUFF.929_From_ws_0_3382728_0 - 1536
SQ: CUFF.931_From_wu_0_2679395_0 - 132
SQ: CUFF.933_From_tsu_0_3212935_0 - 1034
SQ: CUFF.935_From_ws_0_3380934_0 - 217
SQ: CUFF.937_From_ws_0_3373604_0 - 555
SQ: CUFF.939_From_ws_0_3365892_0 - 2013
SQ: CUFF.941_From_wu_0_2824308_0 - 825
SQ: CUFF.943_From_zu_0_3075813_0 - 134
SQ: CUFF.945_From_wu_0_2678387_0 - 182
SQ: CUFF.947_From_wu_0_2654219_0 - 149
SQ: CUFF.949_From_wu_0_2687576_0 - 160
SQ: CUFF.951_From_wil_2_3087183_0 - 810
SQ: CUFF.953_From_ws_0_3382500_0 - 3666
SQ: CUFF.955_From_ws_0_3340488_0 - 390
SQ: CUFF.957_From_ws_0_3381390_0 - 961
SQ: CUFF.959_From_ws_0_3344070_0 - 901
SQ: CUFF.961_From_wu_0_2837848_0 - 2017
SQ: CUFF.963_From_zu_0_3092045_0 - 156
SQ: CUFF.965_From_zu_0_3238769_0 - 445
SQ: CUFF.967_From_zu_0_3022629_0 - 113
SQ: CUFF.969_From_zu_0_3190435_0 - 295
SQ: CUFF.971_From_zu_0_3255169_0 - 1080
SQ: CUFF.973_From_zu_0_3242889_0 - 388
SQ: CUFF.975_From_zu_0_3259399_1 - 267
SQ: CUFF.977_From_zu_0_3255503_0 - 328
SQ: CUFF.979_From_zu_0_3278243_0 - 211
SQ: CUFF.981_From_zu_0_3289907_1 - 1112
SQ: CUFF.983_From_zu_0_3243571_0 - 752
SQ: CUFF.985_From_zu_0_3280213_0 - 1674
SQ: CUFF.987_From_zu_0_3118546_0 - 172
SQ: CUFF.989_From_zu_0_3289907_1 - 1261
SQ: CUFF.991_From_zu_0_3277661_0 - 680
SQ: CUFF.993_From_zu_0_3082201_0 - 149
Loaded 37 junctions
Reporting final accepted alignments...done
Printing junction BED track...done
Found 36 junctions from happy spliced reads