segment_juncs v1.1.4 (1709) --------------------------- Loading reference sequences... Loading CUFF.993_From_zu_0_3082201_0...done Loading CUFF.879_From_rsch_4_4055167_0...done Loading CUFF.737_From_ct_1_3132277_0...done Loading CUFF.913_From_wil_2_2834553_0...done Loading CUFF.967_From_zu_0_3022629_0...done Loading CUFF.811_From_sf_2_2459023_0...done Loading CUFF.755_From_mt_0_4193196_0...done Loading CUFF.783_From_oy_0_2965192_0...done Loading CUFF.677_From_ct_1_3133995_0...done Loading CUFF.763_From_rsch_4_4032032_0...done Loading CUFF.695_From_mt_0_4217716_0...done Loading CUFF.571_From_can_0_3076940_0...done Loading CUFF.759_From_no_0_2936769_0...done Loading CUFF.987_From_zu_0_3118546_0...done Loading CUFF.545_From_bur_0_1856286_0...done Loading CUFF.771_From_po_0_3332479_0...done Loading CUFF.531_From_bur_0_1868430_0...done Loading CUFF.747_From_po_0_3299272_0...done Loading CUFF.717_From_oy_0_2966542_0...done Loading CUFF.805_From_sf_2_2486157_0...done Loading CUFF.609_From_hi_0_2755116_0...done Loading CUFF.703_From_no_0_2885444_0...done Loading CUFF.523_From_bur_0_1804399_0...done Loading CUFF.817_From_sf_2_2524453_0...done Loading CUFF.575_From_ct_1_3082021_0...done Loading CUFF.807_From_sf_2_2488391_0...done Loading CUFF.757_From_po_0_3372769_0...done Loading CUFF.751_From_rsch_4_4034850_0...done Loading CUFF.733_From_no_0_2956652_0...done Loading CUFF.655_From_hi_0_2795398_0...done Loading CUFF.699_From_no_0_2905273_0...done Loading CUFF.729_From_oy_0_3001818_0...done Loading CUFF.689_From_ler_0_4018856_0...done Loading CUFF.799_From_sf_2_2662232_0...done Loading CUFF.697_From_mt_0_4229662_0...done Loading CUFF.723_From_po_0_3306688_0...done Loading CUFF.679_From_ler_0_3998410_0...done Loading CUFF.735_From_po_0_3293868_0...done Loading CUFF.947_From_wu_0_2654219_0...done Loading CUFF.861_From_mt_0_4528444_1...done Loading CUFF.599_From_edi_0_2744702_0...done Loading CUFF.525_From_bur_0_1863298_0...done Loading CUFF.663_From_kn_0_3613403_0...done Loading CUFF.949_From_wu_0_2687576_0...done Loading CUFF.743_From_po_0_3330421_0...done Loading CUFF.671_From_edi_0_2859720_0...done Loading CUFF.687_From_mt_0_4230874_0...done Loading CUFF.881_From_wil_2_2925323_0...done Loading CUFF.641_From_kn_0_3605300_0...done Loading CUFF.629_From_kn_0_3594465_0...done Loading CUFF.623_From_hi_0_2778596_0...done Loading CUFF.801_From_sf_2_2532172_0...done Loading CUFF.573_From_can_0_3233581_0...done Loading CUFF.561_From_can_0_3189753_0...done Loading CUFF.935_From_ws_0_3380934_0...done Loading CUFF.731_From_po_0_3324652_0...done Loading CUFF.955_From_ws_0_3340488_0...done Loading CUFF.529_From_bur_0_1873494_0...done Loading CUFF.777_From_rsch_4_4085063_0...done Loading CUFF.577_From_ct_1_3125173_0...done Loading CUFF.685_From_mt_0_4231054_0...done Loading CUFF.657_From_ler_0_3998132_0...done Loading CUFF.649_From_kn_0_3617271_0...done Loading CUFF.945_From_wu_0_2678387_0...done Loading CUFF.551_From_can_0_3122480_0...done Loading CUFF.753_From_oy_0_3121110_0...done Loading CUFF.693_From_no_0_2934639_0...done Loading CUFF.791_From_rsch_4_4255532_0...done Loading CUFF.665_From_hi_0_2939638_0...done Loading CUFF.795_From_rsch_4_4297142_0...done Loading CUFF.907_From_ws_0_3182508_0...done Loading CUFF.613_From_hi_0_2773206_0...done Loading CUFF.589_From_edi_0_2723255_0...done Loading CUFF.779_From_rsch_4_4214541_0...done Loading CUFF.719_From_oy_0_2936927_0...done Loading CUFF.543_From_can_0_3017860_0...done Loading CUFF.707_From_no_0_2959683_0...done Loading CUFF.579_From_ct_1_3133451_0...done Loading CUFF.951_From_wil_2_3087183_0...done Loading CUFF.775_From_rsch_4_4091241_0...done Loading CUFF.813_From_tsu_0_2970253_0...done Loading CUFF.925_From_ws_0_3371988_0...done Loading CUFF.963_From_zu_0_3092045_0...done Loading CUFF.769_From_rsch_4_4107621_0...done Loading CUFF.651_From_ler_0_3967940_0...done Loading CUFF.639_From_hi_0_2916184_0...done Loading CUFF.991_From_zu_0_3277661_0...done Loading CUFF.597_From_edi_0_2759827_0...done Loading CUFF.977_From_zu_0_3255503_0...done Loading CUFF.959_From_ws_0_3344070_0...done Loading CUFF.973_From_zu_0_3242889_0...done Loading CUFF.701_From_no_0_2951521_0...done Loading CUFF.857_From_sf_2_2653966_0...done Loading CUFF.741_From_po_0_3382155_0...done Loading CUFF.787_From_rsch_4_4277566_0...done Loading CUFF.829_From_tsu_0_3135135_0...done Loading CUFF.803_From_po_0_3573778_0...done Loading CUFF.979_From_zu_0_3278243_0...done Loading CUFF.781_From_rsch_4_4277566_0...done Loading CUFF.793_From_sf_2_2504999_0...done Loading CUFF.767_From_rsch_4_4118145_0...done Loading CUFF.975_From_zu_0_3259399_1...done Loading CUFF.927_From_wu_0_2655481_0...done Loading CUFF.851_From_wil_2_2906137_0...done Loading CUFF.915_From_ws_0_3349444_1...done Loading CUFF.843_From_rsch_4_4292194_1...done Loading CUFF.931_From_wu_0_2679395_0...done Loading CUFF.899_From_ws_0_3190963_0...done Loading CUFF.983_From_zu_0_3243571_0...done Loading CUFF.619_From_edi_0_2871668_0...done Loading CUFF.591_From_can_0_3239881_0...done Loading CUFF.569_From_can_0_3263637_0...done Loading CUFF.565_From_can_0_3257137_1...done Loading CUFF.615_From_edi_0_2932438_0...done Loading CUFF.637_From_kn_0_3626969_0...done Loading CUFF.617_From_edi_0_2918156_0...done Loading CUFF.691_From_hi_0_2961678_0...done Loading CUFF.765_From_rsch_4_4110791_0...done Loading CUFF.666_From_ler_0_4004770_0...done Loading CUFF.865_From_wil_2_2892485_0...done Loading CUFF.909_From_wil_2_3052273_0...done Loading CUFF.535_From_bur_0_1969548_0...done Loading CUFF.873_From_wil_2_3050523_0...done Loading CUFF.855_From_wil_2_2915899_0...done Loading CUFF.645_From_edi_0_2888586_0...done Loading CUFF.563_From_bur_0_2020452_0...done Loading CUFF.681_From_mt_0_4399784_0...done Loading CUFF.819_From_tsu_0_3036945_0...done Loading CUFF.969_From_zu_0_3190435_0...done Loading CUFF.541_From_can_0_3059433_0...done Loading CUFF.957_From_ws_0_3381390_0...done Loading CUFF.937_From_ws_0_3373604_0...done Loading CUFF.853_From_wil_2_2920529_0...done Loading CUFF.871_From_rsch_4_4266550_0...done Loading CUFF.893_From_ws_0_3190679_0...done Loading CUFF.887_From_wil_2_3054893_0...done Loading CUFF.727_From_hi_0_2953648_0...done Loading CUFF.911_From_wil_2_3068737_0...done Loading CUFF.635_From_ct_1_3241157_0...done Loading CUFF.867_From_wil_2_2945095_0...done Loading CUFF.675_From_mt_0_4213448_0...done Loading CUFF.611_From_edi_0_2921730_0...done Loading CUFF.555_From_can_0_3217045_0...done Loading CUFF.595_From_ct_1_3302721_0...done Loading CUFF.715_From_oy_0_3098144_0...done Loading CUFF.891_From_wil_2_3079625_0...done Loading CUFF.705_From_no_0_3113578_1...done Loading CUFF.823_From_tsu_0_3175121_0...done Loading CUFF.883_From_wil_2_3066229_0...done Loading CUFF.933_From_tsu_0_3212935_0...done Loading CUFF.943_From_zu_0_3075813_0...done Loading CUFF.889_From_ws_0_3181530_0...done Loading CUFF.537_From_bur_0_1999718_0...done Loading CUFF.815_From_sf_2_2671632_0...done Loading CUFF.833_From_tsu_0_3208747_0...done Loading CUFF.877_From_sf_2_2687786_0...done Loading CUFF.789_From_rsch_4_4275442_0...done Loading CUFF.827_From_rsch_4_4277288_0...done Loading CUFF.593_From_can_0_3270131_0...done Loading CUFF.885_From_wil_2_3063473_0...done Loading CUFF.739_From_po_0_3340213_0...done Loading CUFF.653_From_kn_0_3751597_0...done Loading CUFF.709_From_no_0_3101262_0...done Loading CUFF.821_From_tsu_0_3175121_0...done Loading CUFF.581_From_can_0_3218459_0...done Loading CUFF.831_From_sf_2_2687774_0...done Loading CUFF.835_From_tsu_0_3211741_0...done Loading CUFF.725_From_no_0_3116640_0...done Loading CUFF.869_From_sf_2_2701328_0...done Loading CUFF.785_From_no_0_3128142_0...done Loading CUFF.527_From_bur_0_1967596_0...done Loading CUFF.659_From_ler_0_4153595_0...done Loading CUFF.965_From_zu_0_3238769_0...done Loading CUFF.683_From_ler_0_4165287_0...done Loading CUFF.749_From_oy_0_3162092_0...done Loading CUFF.897_From_ws_0_3298283_0...done Loading CUFF.711_From_no_0_3088052_0...done Loading CUFF.971_From_zu_0_3255169_0...done Loading CUFF.585_From_ct_1_3247037_0...done Loading CUFF.669_From_ler_0_4225073_0...done Loading CUFF.919_From_ws_0_3347582_0...done Loading CUFF.539_From_bur_0_2021834_0...done Loading CUFF.903_From_wil_2_3089541_0...done Loading CUFF.673_From_ler_0_4224097_0...done Loading CUFF.905_From_ws_0_3339092_0...done Loading CUFF.559_From_can_0_3231205_0...done Loading CUFF.839_From_sf_2_2680171_0...done Loading CUFF.921_From_wil_2_3077447_0...done Loading CUFF.809_From_sf_2_2682779_0...done Loading CUFF.627_From_edi_0_2889434_0...done Loading CUFF.847_From_tsu_0_3242833_1...done Loading CUFF.863_From_wil_2_3008461_1...done Loading CUFF.989_From_zu_0_3289907_1...done Loading CUFF.901_From_wil_2_3088151_0...done Loading CUFF.553_From_can_0_3223655_0...done Loading CUFF.567_From_can_0_3258779_0...done Loading CUFF.647_From_kn_0_3802200_0...done Loading CUFF.837_From_tsu_0_3215671_0...done Loading CUFF.985_From_zu_0_3280213_0...done Loading CUFF.875_From_wil_2_3052951_0...done Loading CUFF.745_From_po_0_3507160_0...done Loading CUFF.607_From_edi_0_2891226_0...done Loading CUFF.981_From_zu_0_3289907_1...done Loading CUFF.941_From_wu_0_2824308_0...done Loading CUFF.557_From_can_0_3234869_1...done Loading CUFF.849_From_tsu_0_3222297_0...done Loading CUFF.547_From_bur_0_2032354_0...done Loading CUFF.895_From_tsu_0_3215821_0...done Loading CUFF.859_From_tsu_0_3215737_0...done Loading CUFF.773_From_po_0_3606391_0...done Loading CUFF.661_From_kn_0_3819922_1...done Loading CUFF.643_From_kn_0_3799876_0...done Loading CUFF.797_From_sf_2_2676583_0...done Loading CUFF.587_From_ct_1_3277323_0...done Loading CUFF.549_From_can_0_3216099_0...done Loading CUFF.825_From_sf_2_2700286_0...done Loading CUFF.961_From_wu_0_2837848_0...done Loading CUFF.761_From_po_0_3606391_1...done Loading CUFF.633_From_hi_0_2959094_0...done Loading CUFF.721_From_no_0_3120392_0...done Loading CUFF.625_From_hi_0_2964064_0...done Loading CUFF.603_From_bur_0_2025286_0...done Loading CUFF.939_From_ws_0_3365892_0...done Loading CUFF.929_From_ws_0_3382728_0...done Loading CUFF.953_From_ws_0_3382500_0...done Loading CUFF.533_From_bur_0_2020452_0...done Loading CUFF.713_From_no_0_3116320_0...done Loading CUFF.583_From_ct_1_3302721_0...done Loading CUFF.845_From_tsu_0_3243273_0...done Loading CUFF.841_From_tsu_0_3243273_0...done Loading CUFF.631_From_hi_0_2959094_0...done Loading CUFF.621_From_edi_0_2934714_0...done Loading CUFF.601_From_edi_0_2934714_0...done Loading CUFF.604_From_edi_0_2934714_0...done Loading CUFF.917_From_ws_0_3371988_0...done Loading CUFF.923_From_ws_0_3382728_0...done Loading left segment hits...Microaligned 30836 segments done. Found 1225 potential split-segment junctions Indexing extensions in all18///tmp/left_kept_reads_seg1_missing.fq Indexing extensions in all18///tmp/left_kept_reads_seg2_missing.fq Indexing extensions in all18///tmp/left_kept_reads_seg3_missing.fq Total extensions: 469935283 Total extensions: 469935283 Total extensions: 469935283 Looking for junctions by island end pairings Adding hits from segment file 0 to coverage map Adding hits from segment file 1 to coverage map Adding hits from segment file 2 to coverage map Map covers 71394 bases Map covers 70700 bases in sufficiently long segments Map contains 677 good islands 23425 are left looking bases 22214 are right looking bases Collecting potential splice sites in islands reporting synthetic splice junctions... Examining donor-acceptor pairings in CUFF.715_From_oy_0_3098144_0 Examining donor-acceptor pairings in CUFF.833_From_tsu_0_3208747_0 Examining donor-acceptor pairings in CUFF.555_From_can_0_3217045_0 Examining donor-acceptor pairings in CUFF.839_From_sf_2_2680171_0 Examining donor-acceptor pairings in CUFF.969_From_zu_0_3190435_0 Examining donor-acceptor pairings in CUFF.559_From_can_0_3231205_0 Examining donor-acceptor pairings in CUFF.959_From_ws_0_3344070_0 Examining donor-acceptor pairings in CUFF.661_From_kn_0_3819922_1 Examining donor-acceptor pairings in CUFF.789_From_rsch_4_4275442_0 Examining donor-acceptor pairings in CUFF.587_From_ct_1_3277323_0 Examining donor-acceptor pairings in CUFF.845_From_tsu_0_3243273_0 Examining donor-acceptor pairings in CUFF.955_From_ws_0_3340488_0 Examining donor-acceptor pairings in CUFF.705_From_no_0_3113578_1 Examining donor-acceptor pairings in CUFF.625_From_hi_0_2964064_0 Examining donor-acceptor pairings in CUFF.905_From_ws_0_3339092_0 Examining donor-acceptor pairings in CUFF.925_From_ws_0_3371988_0 Examining donor-acceptor pairings in CUFF.601_From_edi_0_2934714_0 Examining donor-acceptor pairings in CUFF.639_From_hi_0_2916184_0 Examining donor-acceptor pairings in CUFF.553_From_can_0_3223655_0 Examining donor-acceptor pairings in CUFF.727_From_hi_0_2953648_0 Examining donor-acceptor pairings in CUFF.965_From_zu_0_3238769_0 Examining donor-acceptor pairings in CUFF.973_From_zu_0_3242889_0 Examining donor-acceptor pairings in CUFF.611_From_edi_0_2921730_0 Examining donor-acceptor pairings in CUFF.931_From_wu_0_2679395_0 Examining donor-acceptor pairings in CUFF.745_From_po_0_3507160_0 Examining donor-acceptor pairings in CUFF.604_From_edi_0_2934714_0 Examining donor-acceptor pairings in CUFF.749_From_oy_0_3162092_0 Examining donor-acceptor pairings in CUFF.647_From_kn_0_3802200_0 Examining donor-acceptor pairings in CUFF.911_From_wil_2_3068737_0 Examining donor-acceptor pairings in CUFF.917_From_ws_0_3371988_0 Examining donor-acceptor pairings in CUFF.921_From_wil_2_3077447_0 Examining donor-acceptor pairings in CUFF.619_From_edi_0_2871668_0 Examining donor-acceptor pairings in CUFF.691_From_hi_0_2961678_0 Examining donor-acceptor pairings in CUFF.933_From_tsu_0_3212935_0 Examining donor-acceptor pairings in CUFF.941_From_wu_0_2824308_0 Examining donor-acceptor pairings in CUFF.535_From_bur_0_1969548_0 Examining donor-acceptor pairings in CUFF.985_From_zu_0_3280213_0 Examining donor-acceptor pairings in CUFF.847_From_tsu_0_3242833_1 Examining donor-acceptor pairings in CUFF.857_From_sf_2_2653966_0 Examining donor-acceptor pairings in CUFF.659_From_ler_0_4153595_0 Examining donor-acceptor pairings in CUFF.621_From_edi_0_2934714_0 Examining donor-acceptor pairings in CUFF.919_From_ws_0_3347582_0 Examining donor-acceptor pairings in CUFF.863_From_wil_2_3008461_1 Examining donor-acceptor pairings in CUFF.585_From_ct_1_3247037_0 Examining donor-acceptor pairings in CUFF.827_From_rsch_4_4277288_0 Examining donor-acceptor pairings in CUFF.653_From_kn_0_3751597_0 Examining donor-acceptor pairings in CUFF.875_From_wil_2_3052951_0 Examining donor-acceptor pairings in CUFF.909_From_wil_2_3052273_0 Examining donor-acceptor pairings in CUFF.903_From_wil_2_3089541_0 Examining donor-acceptor pairings in CUFF.673_From_ler_0_4224097_0 Examining donor-acceptor pairings in CUFF.897_From_ws_0_3298283_0 Examining donor-acceptor pairings in CUFF.617_From_edi_0_2918156_0 Examining donor-acceptor pairings in CUFF.595_From_ct_1_3302721_0 Examining donor-acceptor pairings in CUFF.901_From_wil_2_3088151_0 Examining donor-acceptor pairings in CUFF.761_From_po_0_3606391_1 Examining donor-acceptor pairings in CUFF.549_From_can_0_3216099_0 Examining donor-acceptor pairings in CUFF.557_From_can_0_3234869_1 Examining donor-acceptor pairings in CUFF.635_From_ct_1_3241157_0 Examining donor-acceptor pairings in CUFF.957_From_ws_0_3381390_0 Examining donor-acceptor pairings in CUFF.567_From_can_0_3258779_0 Examining donor-acceptor pairings in CUFF.791_From_rsch_4_4255532_0 Examining donor-acceptor pairings in CUFF.725_From_no_0_3116640_0 Examining donor-acceptor pairings in CUFF.939_From_ws_0_3365892_0 Examining donor-acceptor pairings in CUFF.867_From_wil_2_2945095_0 Examining donor-acceptor pairings in CUFF.537_From_bur_0_1999718_0 Examining donor-acceptor pairings in CUFF.841_From_tsu_0_3243273_0 Examining donor-acceptor pairings in CUFF.627_From_edi_0_2889434_0 Examining donor-acceptor pairings in CUFF.981_From_zu_0_3289907_1 Examining donor-acceptor pairings in CUFF.591_From_can_0_3239881_0 Examining donor-acceptor pairings in CUFF.825_From_sf_2_2700286_0 Examining donor-acceptor pairings in CUFF.883_From_wil_2_3066229_0 Examining donor-acceptor pairings in CUFF.721_From_no_0_3120392_0 Examining donor-acceptor pairings in CUFF.989_From_zu_0_3289907_1 Examining donor-acceptor pairings in CUFF.679_From_ler_0_3998410_0 Examining donor-acceptor pairings in CUFF.889_From_ws_0_3181530_0 Examining donor-acceptor pairings in CUFF.837_From_tsu_0_3215671_0 Examining donor-acceptor pairings in CUFF.603_From_bur_0_2025286_0 Examining donor-acceptor pairings in CUFF.961_From_wu_0_2837848_0 Examining donor-acceptor pairings in CUFF.815_From_sf_2_2671632_0 Examining donor-acceptor pairings in CUFF.831_From_sf_2_2687774_0 Examining donor-acceptor pairings in CUFF.581_From_can_0_3218459_0 Examining donor-acceptor pairings in CUFF.563_From_bur_0_2020452_0 Examining donor-acceptor pairings in CUFF.861_From_mt_0_4528444_1 Examining donor-acceptor pairings in CUFF.707_From_no_0_2959683_0 Examining donor-acceptor pairings in CUFF.991_From_zu_0_3277661_0 Examining donor-acceptor pairings in CUFF.885_From_wil_2_3063473_0 Examining donor-acceptor pairings in CUFF.871_From_rsch_4_4266550_0 Examining donor-acceptor pairings in CUFF.593_From_can_0_3270131_0 Examining donor-acceptor pairings in CUFF.637_From_kn_0_3626969_0 Examining donor-acceptor pairings in CUFF.643_From_kn_0_3799876_0 Examining donor-acceptor pairings in CUFF.887_From_wil_2_3054893_0 Examining donor-acceptor pairings in CUFF.645_From_edi_0_2888586_0 Examining donor-acceptor pairings in CUFF.869_From_sf_2_2701328_0 Examining donor-acceptor pairings in CUFF.971_From_zu_0_3255169_0 Examining donor-acceptor pairings in CUFF.713_From_no_0_3116320_0 Examining donor-acceptor pairings in CUFF.785_From_no_0_3128142_0 Examining donor-acceptor pairings in CUFF.583_From_ct_1_3302721_0 Examining donor-acceptor pairings in CUFF.891_From_wil_2_3079625_0 Examining donor-acceptor pairings in CUFF.895_From_tsu_0_3215821_0 Examining donor-acceptor pairings in CUFF.773_From_po_0_3606391_0 Examining donor-acceptor pairings in CUFF.709_From_no_0_3101262_0 Examining donor-acceptor pairings in CUFF.753_From_oy_0_3121110_0 Examining donor-acceptor pairings in CUFF.669_From_ler_0_4225073_0 Examining donor-acceptor pairings in CUFF.843_From_rsch_4_4292194_1 Examining donor-acceptor pairings in CUFF.929_From_ws_0_3382728_0 Examining donor-acceptor pairings in CUFF.547_From_bur_0_2032354_0 Examining donor-acceptor pairings in CUFF.539_From_bur_0_2021834_0 Examining donor-acceptor pairings in CUFF.569_From_can_0_3263637_0 Examining donor-acceptor pairings in CUFF.683_From_ler_0_4165287_0 Examining donor-acceptor pairings in CUFF.835_From_tsu_0_3211741_0 Examining donor-acceptor pairings in CUFF.797_From_sf_2_2676583_0 Examining donor-acceptor pairings in CUFF.915_From_ws_0_3349444_1 Examining donor-acceptor pairings in CUFF.607_From_edi_0_2891226_0 Examining donor-acceptor pairings in CUFF.803_From_po_0_3573778_0 Examining donor-acceptor pairings in CUFF.927_From_wu_0_2655481_0 Examining donor-acceptor pairings in CUFF.711_From_no_0_3088052_0 Examining donor-acceptor pairings in CUFF.937_From_ws_0_3373604_0 Examining donor-acceptor pairings in CUFF.681_From_mt_0_4399784_0 Examining donor-acceptor pairings in CUFF.951_From_wil_2_3087183_0 Examining donor-acceptor pairings in CUFF.849_From_tsu_0_3222297_0 Examining donor-acceptor pairings in CUFF.527_From_bur_0_1967596_0 Examining donor-acceptor pairings in CUFF.809_From_sf_2_2682779_0 Examining donor-acceptor pairings in CUFF.859_From_tsu_0_3215737_0 Examining donor-acceptor pairings in CUFF.877_From_sf_2_2687786_0 Examining donor-acceptor pairings in CUFF.953_From_ws_0_3382500_0 Examining donor-acceptor pairings in CUFF.983_From_zu_0_3243571_0 Examining donor-acceptor pairings in CUFF.873_From_wil_2_3050523_0 Found 195 potential island-end pairing junctions done Aligning 30836 microexon segments in 647 windows window 100 window 200 window 300 window 400 window 500 window 600 Checked 61672 segments against 647 windows for microexon junctions Found 68 potential microexon junctions -- microexon -- CUFF.987_From_zu_0_3118546_0 89 145 + CUFF.581_From_can_0_3218459_0 88 169 + CUFF.581_From_can_0_3218459_0 93 169 + CUFF.673_From_ler_0_4224097_0 440 516 - CUFF.987_From_zu_0_3118546_0 30 143 - CUFF.987_From_zu_0_3118546_0 62 145 + CUFF.987_From_zu_0_3118546_0 89 161 + CUFF.583_From_ct_1_3302721_0 135 221 - CUFF.895_From_tsu_0_3215821_0 581 678 - CUFF.929_From_ws_0_3382728_0 533 631 - CUFF.683_From_ler_0_4165287_0 539 654 + CUFF.987_From_zu_0_3118546_0 62 161 + CUFF.987_From_zu_0_3118546_0 89 166 + CUFF.581_From_can_0_3218459_0 655 791 + CUFF.987_From_zu_0_3118546_0 62 166 + CUFF.727_From_hi_0_2953648_0 476 617 - CUFF.849_From_tsu_0_3222297_0 130 267 + CUFF.655_From_hi_0_2795398_0 1 171 - CUFF.655_From_hi_0_2795398_0 3 171 - CUFF.655_From_hi_0_2795398_0 5 171 - CUFF.655_From_hi_0_2795398_0 7 171 - CUFF.655_From_hi_0_2795398_0 9 171 - CUFF.655_From_hi_0_2795398_0 11 171 - CUFF.655_From_hi_0_2795398_0 13 171 - CUFF.655_From_hi_0_2795398_0 15 171 - CUFF.655_From_hi_0_2795398_0 17 171 - CUFF.655_From_hi_0_2795398_0 -1 171 - CUFF.655_From_hi_0_2795398_0 1 174 - CUFF.655_From_hi_0_2795398_0 3 174 - CUFF.655_From_hi_0_2795398_0 5 174 - CUFF.655_From_hi_0_2795398_0 7 174 - CUFF.655_From_hi_0_2795398_0 9 174 - CUFF.655_From_hi_0_2795398_0 11 174 - CUFF.655_From_hi_0_2795398_0 13 174 - CUFF.655_From_hi_0_2795398_0 15 174 - CUFF.655_From_hi_0_2795398_0 17 174 - CUFF.655_From_hi_0_2795398_0 -1 174 - CUFF.535_From_bur_0_1969548_0 441 618 + CUFF.655_From_hi_0_2795398_0 1 177 - CUFF.655_From_hi_0_2795398_0 3 177 - CUFF.655_From_hi_0_2795398_0 5 177 - CUFF.655_From_hi_0_2795398_0 7 177 - CUFF.655_From_hi_0_2795398_0 9 177 - CUFF.655_From_hi_0_2795398_0 11 177 - CUFF.655_From_hi_0_2795398_0 13 177 - CUFF.655_From_hi_0_2795398_0 15 177 - CUFF.655_From_hi_0_2795398_0 17 177 - CUFF.655_From_hi_0_2795398_0 -1 177 - CUFF.691_From_hi_0_2961678_0 338 522 + CUFF.939_From_ws_0_3365892_0 604 806 + CUFF.655_From_hi_0_2795398_0 1 181 - CUFF.655_From_hi_0_2795398_0 3 181 - CUFF.655_From_hi_0_2795398_0 5 181 - CUFF.655_From_hi_0_2795398_0 7 181 - CUFF.655_From_hi_0_2795398_0 9 181 - CUFF.655_From_hi_0_2795398_0 11 181 - CUFF.655_From_hi_0_2795398_0 13 181 - CUFF.655_From_hi_0_2795398_0 15 181 - CUFF.655_From_hi_0_2795398_0 17 181 - CUFF.655_From_hi_0_2795398_0 -1 181 - CUFF.869_From_sf_2_2701328_0 140 458 + CUFF.891_From_wil_2_3079625_0 66 377 + CUFF.591_From_can_0_3239881_0 311 745 - CUFF.925_From_ws_0_3371988_0 121 294 + CUFF.725_From_no_0_3116640_0 368 842 - CUFF.627_From_edi_0_2889434_0 190 596 + CUFF.871_From_rsch_4_4266550_0 628 903 - CUFF.535_From_bur_0_1969548_0 66 618 + -- done -- -- seg -- CUFF.839_From_sf_2_2680171_0 178 1059 + CUFF.839_From_sf_2_2680171_0 181 1051 - CUFF.839_From_sf_2_2680171_0 181 1059 + CUFF.839_From_sf_2_2680171_0 184 1059 + CUFF.839_From_sf_2_2680171_0 188 1067 + CUFF.839_From_sf_2_2680171_0 190 1051 - CUFF.839_From_sf_2_2680171_0 190 1059 + CUFF.839_From_sf_2_2680171_0 192 1067 - CUFF.839_From_sf_2_2680171_0 195 1067 - CUFF.839_From_sf_2_2680171_0 199 1059 + CUFF.839_From_sf_2_2680171_0 200 1067 - CUFF.839_From_sf_2_2680171_0 205 1059 + CUFF.839_From_sf_2_2680171_0 206 1067 - CUFF.839_From_sf_2_2680171_0 254 1046 + CUFF.839_From_sf_2_2680171_0 271 1051 - CUFF.839_From_sf_2_2680171_0 271 1059 + CUFF.839_From_sf_2_2680171_0 277 1046 - CUFF.839_From_sf_2_2680171_0 280 1046 + CUFF.573_From_can_0_3233581_0 75 134 + CUFF.573_From_can_0_3233581_0 77 138 - CUFF.573_From_can_0_3233581_0 80 134 + CUFF.573_From_can_0_3233581_0 81 138 - CUFF.573_From_can_0_3233581_0 84 144 + CUFF.573_From_can_0_3233581_0 86 144 + CUFF.573_From_can_0_3233581_0 90 144 + CUFF.639_From_hi_0_2916184_0 199 356 + CUFF.639_From_hi_0_2916184_0 204 364 + CUFF.639_From_hi_0_2916184_0 208 356 + CUFF.639_From_hi_0_2916184_0 212 356 + CUFF.639_From_hi_0_2916184_0 219 356 + CUFF.727_From_hi_0_2953648_0 337 606 + CUFF.727_From_hi_0_2953648_0 344 606 + CUFF.727_From_hi_0_2953648_0 350 606 + CUFF.727_From_hi_0_2953648_0 355 606 + CUFF.727_From_hi_0_2953648_0 357 606 - CUFF.727_From_hi_0_2953648_0 360 606 + CUFF.727_From_hi_0_2953648_0 363 601 + CUFF.727_From_hi_0_2953648_0 421 606 - CUFF.727_From_hi_0_2953648_0 430 601 + CUFF.727_From_hi_0_2953648_0 436 601 + CUFF.727_From_hi_0_2953648_0 442 606 + CUFF.727_From_hi_0_2953648_0 451 601 + CUFF.727_From_hi_0_2953648_0 460 606 + CUFF.727_From_hi_0_2953648_0 460 612 + CUFF.727_From_hi_0_2953648_0 466 601 + CUFF.727_From_hi_0_2953648_0 466 615 - CUFF.727_From_hi_0_2953648_0 466 622 + CUFF.727_From_hi_0_2953648_0 476 606 - CUFF.727_From_hi_0_2953648_0 476 612 - CUFF.727_From_hi_0_2953648_0 480 606 + CUFF.727_From_hi_0_2953648_0 480 612 + CUFF.727_From_hi_0_2953648_0 483 606 + CUFF.727_From_hi_0_2953648_0 483 612 + CUFF.727_From_hi_0_2953648_0 491 606 + CUFF.727_From_hi_0_2953648_0 491 612 + CUFF.727_From_hi_0_2953648_0 496 601 + CUFF.745_From_po_0_3507160_0 26 88 - CUFF.745_From_po_0_3507160_0 26 102 - CUFF.745_From_po_0_3507160_0 28 88 + CUFF.745_From_po_0_3507160_0 33 88 + CUFF.745_From_po_0_3507160_0 41 101 + CUFF.745_From_po_0_3507160_0 44 107 + CUFF.921_From_wil_2_3077447_0 72 227 + CUFF.921_From_wil_2_3077447_0 76 227 + CUFF.921_From_wil_2_3077447_0 76 238 - CUFF.921_From_wil_2_3077447_0 84 230 + CUFF.921_From_wil_2_3077447_0 87 230 - CUFF.921_From_wil_2_3077447_0 87 240 - CUFF.921_From_wil_2_3077447_0 90 230 + CUFF.921_From_wil_2_3077447_0 93 227 + CUFF.921_From_wil_2_3077447_0 93 238 - CUFF.921_From_wil_2_3077447_0 97 227 + CUFF.921_From_wil_2_3077447_0 97 238 - CUFF.933_From_tsu_0_3212935_0 144 382 - CUFF.933_From_tsu_0_3212935_0 144 392 - CUFF.933_From_tsu_0_3212935_0 150 382 + CUFF.933_From_tsu_0_3212935_0 167 382 - CUFF.933_From_tsu_0_3212935_0 167 392 - CUFF.933_From_tsu_0_3212935_0 575 631 + CUFF.933_From_tsu_0_3212935_0 581 636 + CUFF.933_From_tsu_0_3212935_0 587 642 + CUFF.933_From_tsu_0_3212935_0 589 642 + CUFF.933_From_tsu_0_3212935_0 592 650 + CUFF.933_From_tsu_0_3212935_0 597 651 - CUFF.535_From_bur_0_1969548_0 52 130 + CUFF.535_From_bur_0_1969548_0 58 130 + CUFF.535_From_bur_0_1969548_0 60 130 - CUFF.535_From_bur_0_1969548_0 60 135 - CUFF.535_From_bur_0_1969548_0 62 130 + CUFF.535_From_bur_0_1969548_0 66 122 + CUFF.535_From_bur_0_1969548_0 66 134 + CUFF.535_From_bur_0_1969548_0 66 141 - CUFF.535_From_bur_0_1969548_0 73 130 + CUFF.535_From_bur_0_1969548_0 75 130 + CUFF.535_From_bur_0_1969548_0 78 145 + CUFF.535_From_bur_0_1969548_0 82 147 + CUFF.535_From_bur_0_1969548_0 83 145 - CUFF.535_From_bur_0_1969548_0 89 147 + CUFF.535_From_bur_0_1969548_0 93 150 + CUFF.765_From_rsch_4_4110791_0 37 94 + CUFF.765_From_rsch_4_4110791_0 37 99 + CUFF.765_From_rsch_4_4110791_0 37 116 - CUFF.765_From_rsch_4_4110791_0 41 94 + CUFF.765_From_rsch_4_4110791_0 41 99 + CUFF.765_From_rsch_4_4110791_0 41 101 + CUFF.765_From_rsch_4_4110791_0 41 116 - CUFF.765_From_rsch_4_4110791_0 45 102 - CUFF.765_From_rsch_4_4110791_0 45 123 - CUFF.765_From_rsch_4_4110791_0 47 101 + CUFF.765_From_rsch_4_4110791_0 47 116 - CUFF.765_From_rsch_4_4110791_0 52 123 + CUFF.765_From_rsch_4_4110791_0 55 123 + CUFF.765_From_rsch_4_4110791_0 59 123 + CUFF.765_From_rsch_4_4110791_0 64 126 + CUFF.765_From_rsch_4_4110791_0 64 128 - CUFF.765_From_rsch_4_4110791_0 67 123 + CUFF.827_From_rsch_4_4277288_0 464 527 + CUFF.827_From_rsch_4_4277288_0 464 529 - CUFF.827_From_rsch_4_4277288_0 466 527 + CUFF.827_From_rsch_4_4277288_0 466 529 - CUFF.827_From_rsch_4_4277288_0 473 527 + CUFF.827_From_rsch_4_4277288_0 473 543 + CUFF.827_From_rsch_4_4277288_0 474 560 - CUFF.827_From_rsch_4_4277288_0 476 529 - CUFF.827_From_rsch_4_4277288_0 476 543 + CUFF.827_From_rsch_4_4277288_0 478 560 - CUFF.827_From_rsch_4_4277288_0 480 560 - CUFF.827_From_rsch_4_4277288_0 488 543 + CUFF.827_From_rsch_4_4277288_0 496 560 - CUFF.827_From_rsch_4_4277288_0 500 560 - CUFF.523_From_bur_0_1804399_0 28 87 + CUFF.909_From_wil_2_3052273_0 93 204 + CUFF.909_From_wil_2_3052273_0 96 199 - CUFF.909_From_wil_2_3052273_0 96 204 - CUFF.909_From_wil_2_3052273_0 100 204 + CUFF.909_From_wil_2_3052273_0 104 199 - CUFF.909_From_wil_2_3052273_0 104 204 - CUFF.909_From_wil_2_3052273_0 108 186 - CUFF.909_From_wil_2_3052273_0 108 196 - CUFF.909_From_wil_2_3052273_0 113 204 + CUFF.909_From_wil_2_3052273_0 115 199 - CUFF.909_From_wil_2_3052273_0 115 204 - CUFF.909_From_wil_2_3052273_0 119 204 + CUFF.909_From_wil_2_3052273_0 124 178 - CUFF.909_From_wil_2_3052273_0 124 196 - CUFF.909_From_wil_2_3052273_0 129 204 + CUFF.909_From_wil_2_3052273_0 135 204 + CUFF.903_From_wil_2_3089541_0 167 340 + CUFF.903_From_wil_2_3089541_0 168 341 - CUFF.903_From_wil_2_3089541_0 168 355 - CUFF.903_From_wil_2_3089541_0 170 341 - CUFF.903_From_wil_2_3089541_0 170 355 - CUFF.903_From_wil_2_3089541_0 173 341 - CUFF.903_From_wil_2_3089541_0 173 355 - CUFF.903_From_wil_2_3089541_0 176 338 - CUFF.903_From_wil_2_3089541_0 176 340 + CUFF.903_From_wil_2_3089541_0 176 343 - CUFF.903_From_wil_2_3089541_0 180 338 - CUFF.903_From_wil_2_3089541_0 180 340 + CUFF.903_From_wil_2_3089541_0 180 343 - CUFF.903_From_wil_2_3089541_0 186 340 + CUFF.903_From_wil_2_3089541_0 188 341 - CUFF.903_From_wil_2_3089541_0 188 355 - CUFF.903_From_wil_2_3089541_0 194 338 - CUFF.903_From_wil_2_3089541_0 194 340 + CUFF.903_From_wil_2_3089541_0 194 343 - CUFF.903_From_wil_2_3089541_0 199 341 - CUFF.903_From_wil_2_3089541_0 199 355 - CUFF.673_From_ler_0_4224097_0 440 493 - CUFF.673_From_ler_0_4224097_0 440 512 - CUFF.673_From_ler_0_4224097_0 447 502 + CUFF.673_From_ler_0_4224097_0 449 502 + CUFF.673_From_ler_0_4224097_0 453 516 + CUFF.673_From_ler_0_4224097_0 456 512 - CUFF.673_From_ler_0_4224097_0 456 516 - CUFF.673_From_ler_0_4224097_0 459 516 + CUFF.901_From_wil_2_3088151_0 455 519 - CUFF.901_From_wil_2_3088151_0 455 521 - CUFF.901_From_wil_2_3088151_0 459 519 + CUFF.901_From_wil_2_3088151_0 462 519 - CUFF.901_From_wil_2_3088151_0 462 521 - CUFF.901_From_wil_2_3088151_0 464 519 - CUFF.901_From_wil_2_3088151_0 464 521 - CUFF.901_From_wil_2_3088151_0 466 519 - CUFF.901_From_wil_2_3088151_0 466 521 - CUFF.957_From_ws_0_3381390_0 455 511 + CUFF.957_From_ws_0_3381390_0 456 514 - CUFF.957_From_ws_0_3381390_0 461 529 + CUFF.627_From_edi_0_2889434_0 190 572 - CUFF.627_From_edi_0_2889434_0 190 578 - CUFF.627_From_edi_0_2889434_0 190 593 + CUFF.627_From_edi_0_2889434_0 197 602 - CUFF.627_From_edi_0_2889434_0 204 572 - CUFF.627_From_edi_0_2889434_0 204 578 - CUFF.627_From_edi_0_2889434_0 204 593 + CUFF.627_From_edi_0_2889434_0 206 602 + CUFF.627_From_edi_0_2889434_0 213 572 - CUFF.627_From_edi_0_2889434_0 213 578 - CUFF.627_From_edi_0_2889434_0 213 593 + CUFF.627_From_edi_0_2889434_0 218 578 - CUFF.627_From_edi_0_2889434_0 218 593 + CUFF.627_From_edi_0_2889434_0 221 602 + CUFF.627_From_edi_0_2889434_0 224 593 + CUFF.627_From_edi_0_2889434_0 225 602 - CUFF.627_From_edi_0_2889434_0 227 602 + CUFF.837_From_tsu_0_3215671_0 258 518 + CUFF.837_From_tsu_0_3215671_0 258 526 + CUFF.837_From_tsu_0_3215671_0 263 515 - CUFF.837_From_tsu_0_3215671_0 263 533 + CUFF.837_From_tsu_0_3215671_0 263 546 - CUFF.837_From_tsu_0_3215671_0 268 518 + CUFF.837_From_tsu_0_3215671_0 268 526 + CUFF.837_From_tsu_0_3215671_0 273 518 - CUFF.837_From_tsu_0_3215671_0 273 526 - CUFF.837_From_tsu_0_3215671_0 273 544 - CUFF.837_From_tsu_0_3215671_0 275 515 - CUFF.837_From_tsu_0_3215671_0 275 533 + CUFF.837_From_tsu_0_3215671_0 275 546 - CUFF.837_From_tsu_0_3215671_0 278 518 + CUFF.837_From_tsu_0_3215671_0 278 526 + CUFF.837_From_tsu_0_3215671_0 281 533 + CUFF.729_From_oy_0_3001818_0 50 107 - CUFF.831_From_sf_2_2687774_0 171 231 - CUFF.831_From_sf_2_2687774_0 174 231 + CUFF.831_From_sf_2_2687774_0 177 231 - CUFF.581_From_can_0_3218459_0 74 171 + CUFF.581_From_can_0_3218459_0 79 158 - CUFF.581_From_can_0_3218459_0 79 162 - CUFF.581_From_can_0_3218459_0 79 169 + CUFF.581_From_can_0_3218459_0 81 171 - CUFF.581_From_can_0_3218459_0 86 147 + CUFF.581_From_can_0_3218459_0 86 171 + CUFF.581_From_can_0_3218459_0 88 145 - CUFF.581_From_can_0_3218459_0 88 158 - CUFF.581_From_can_0_3218459_0 88 162 - CUFF.581_From_can_0_3218459_0 88 169 + CUFF.581_From_can_0_3218459_0 93 153 - CUFF.581_From_can_0_3218459_0 93 158 - CUFF.581_From_can_0_3218459_0 93 162 - CUFF.581_From_can_0_3218459_0 93 169 + 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CUFF.837_From_tsu_0_3215671_0 273 528 - CUFF.837_From_tsu_0_3215671_0 273 535 - CUFF.837_From_tsu_0_3215671_0 278 528 + CUFF.837_From_tsu_0_3215671_0 278 535 + CUFF.581_From_can_0_3218459_0 79 177 - CUFF.581_From_can_0_3218459_0 79 180 - CUFF.581_From_can_0_3218459_0 81 189 - CUFF.581_From_can_0_3218459_0 86 189 + CUFF.581_From_can_0_3218459_0 88 158 - CUFF.581_From_can_0_3218459_0 88 177 - CUFF.581_From_can_0_3218459_0 88 180 - CUFF.581_From_can_0_3218459_0 93 162 - CUFF.581_From_can_0_3218459_0 93 177 - CUFF.581_From_can_0_3218459_0 93 180 - CUFF.581_From_can_0_3218459_0 101 189 + CUFF.581_From_can_0_3218459_0 106 189 + CUFF.581_From_can_0_3218459_0 569 806 - CUFF.581_From_can_0_3218459_0 571 806 - CUFF.581_From_can_0_3218459_0 571 808 - CUFF.581_From_can_0_3218459_0 641 780 - CUFF.581_From_can_0_3218459_0 655 780 - CUFF.581_From_can_0_3218459_0 659 780 - CUFF.581_From_can_0_3218459_0 659 808 - CUFF.581_From_can_0_3218459_0 665 808 - CUFF.581_From_can_0_3218459_0 674 771 - CUFF.581_From_can_0_3218459_0 674 808 - CUFF.581_From_can_0_3218459_0 677 771 - CUFF.581_From_can_0_3218459_0 677 808 - CUFF.581_From_can_0_3218459_0 682 771 - CUFF.581_From_can_0_3218459_0 682 808 - CUFF.581_From_can_0_3218459_0 687 771 - CUFF.861_From_mt_0_4528444_1 317 428 + CUFF.861_From_mt_0_4528444_1 317 438 - CUFF.861_From_mt_0_4528444_1 320 428 + CUFF.861_From_mt_0_4528444_1 320 438 - CUFF.861_From_mt_0_4528444_1 323 428 + CUFF.861_From_mt_0_4528444_1 323 438 - CUFF.861_From_mt_0_4528444_1 337 426 + CUFF.861_From_mt_0_4528444_1 340 426 + CUFF.861_From_mt_0_4528444_1 342 428 + CUFF.593_From_can_0_3270131_0 154 234 - CUFF.593_From_can_0_3270131_0 154 236 - CUFF.593_From_can_0_3270131_0 165 227 + CUFF.593_From_can_0_3270131_0 165 254 + CUFF.593_From_can_0_3270131_0 171 229 + CUFF.645_From_edi_0_2888586_0 359 442 - CUFF.645_From_edi_0_2888586_0 365 442 + CUFF.645_From_edi_0_2888586_0 367 442 - CUFF.645_From_edi_0_2888586_0 369 442 - CUFF.869_From_sf_2_2701328_0 174 463 - CUFF.869_From_sf_2_2701328_0 179 468 + CUFF.869_From_sf_2_2701328_0 185 468 + CUFF.869_From_sf_2_2701328_0 188 468 - CUFF.869_From_sf_2_2701328_0 196 453 - CUFF.869_From_sf_2_2701328_0 196 463 - CUFF.869_From_sf_2_2701328_0 196 474 - CUFF.869_From_sf_2_2701328_0 198 468 - CUFF.869_From_sf_2_2701328_0 200 468 - CUFF.869_From_sf_2_2701328_0 203 453 - CUFF.869_From_sf_2_2701328_0 203 463 - CUFF.869_From_sf_2_2701328_0 203 474 - CUFF.869_From_sf_2_2701328_0 205 453 - CUFF.869_From_sf_2_2701328_0 205 463 - CUFF.869_From_sf_2_2701328_0 205 474 - CUFF.869_From_sf_2_2701328_0 213 453 - CUFF.869_From_sf_2_2701328_0 213 474 - CUFF.971_From_zu_0_3255169_0 626 839 + CUFF.971_From_zu_0_3255169_0 626 859 + CUFF.971_From_zu_0_3255169_0 630 839 + CUFF.971_From_zu_0_3255169_0 630 859 + CUFF.971_From_zu_0_3255169_0 634 839 + CUFF.971_From_zu_0_3255169_0 634 859 + CUFF.971_From_zu_0_3255169_0 638 840 - CUFF.971_From_zu_0_3255169_0 638 851 - CUFF.971_From_zu_0_3255169_0 638 863 - CUFF.971_From_zu_0_3255169_0 645 840 - CUFF.971_From_zu_0_3255169_0 645 851 - CUFF.971_From_zu_0_3255169_0 645 863 - CUFF.971_From_zu_0_3255169_0 648 840 - CUFF.971_From_zu_0_3255169_0 648 851 - CUFF.971_From_zu_0_3255169_0 648 863 - CUFF.971_From_zu_0_3255169_0 652 840 - CUFF.971_From_zu_0_3255169_0 652 851 - CUFF.971_From_zu_0_3255169_0 652 863 - CUFF.971_From_zu_0_3255169_0 656 859 + CUFF.971_From_zu_0_3255169_0 657 863 - CUFF.785_From_no_0_3128142_0 107 215 - CUFF.785_From_no_0_3128142_0 107 218 + CUFF.785_From_no_0_3128142_0 116 221 - CUFF.785_From_no_0_3128142_0 120 215 - CUFF.785_From_no_0_3128142_0 120 218 + CUFF.785_From_no_0_3128142_0 135 215 - CUFF.785_From_no_0_3128142_0 135 218 + CUFF.583_From_ct_1_3302721_0 155 228 - CUFF.583_From_ct_1_3302721_0 157 228 - CUFF.891_From_wil_2_3079625_0 48 373 - CUFF.891_From_wil_2_3079625_0 66 373 - CUFF.891_From_wil_2_3079625_0 71 373 - CUFF.895_From_tsu_0_3215821_0 354 451 - CUFF.895_From_tsu_0_3215821_0 359 451 - CUFF.895_From_tsu_0_3215821_0 529 675 + CUFF.895_From_tsu_0_3215821_0 535 675 + CUFF.895_From_tsu_0_3215821_0 538 675 + CUFF.895_From_tsu_0_3215821_0 550 675 + CUFF.895_From_tsu_0_3215821_0 550 700 + CUFF.895_From_tsu_0_3215821_0 560 700 + CUFF.895_From_tsu_0_3215821_0 579 675 + CUFF.753_From_oy_0_3121110_0 104 220 - CUFF.753_From_oy_0_3121110_0 107 215 + CUFF.753_From_oy_0_3121110_0 112 215 + CUFF.753_From_oy_0_3121110_0 112 219 + CUFF.753_From_oy_0_3121110_0 115 215 + CUFF.753_From_oy_0_3121110_0 115 219 + CUFF.753_From_oy_0_3121110_0 130 215 + CUFF.753_From_oy_0_3121110_0 130 219 + CUFF.753_From_oy_0_3121110_0 139 219 + CUFF.753_From_oy_0_3121110_0 140 223 - CUFF.547_From_bur_0_2032354_0 1228 1319 + CUFF.547_From_bur_0_2032354_0 1240 1319 - CUFF.547_From_bur_0_2032354_0 1249 1319 - CUFF.547_From_bur_0_2032354_0 1253 1319 + CUFF.683_From_ler_0_4165287_0 537 660 + CUFF.683_From_ler_0_4165287_0 537 664 - CUFF.683_From_ler_0_4165287_0 539 660 + CUFF.683_From_ler_0_4165287_0 539 664 - CUFF.683_From_ler_0_4165287_0 543 660 + CUFF.683_From_ler_0_4165287_0 543 664 - CUFF.849_From_tsu_0_3222297_0 116 279 - CUFF.849_From_tsu_0_3222297_0 130 256 - CUFF.849_From_tsu_0_3222297_0 130 272 - CUFF.849_From_tsu_0_3222297_0 130 279 - CUFF.839_From_sf_2_2680171_0 181 1075 - CUFF.839_From_sf_2_2680171_0 190 1075 - CUFF.839_From_sf_2_2680171_0 271 1075 - CUFF.727_From_hi_0_2953648_0 460 636 + CUFF.727_From_hi_0_2953648_0 466 632 - CUFF.727_From_hi_0_2953648_0 476 636 - CUFF.727_From_hi_0_2953648_0 480 636 + CUFF.727_From_hi_0_2953648_0 483 636 + CUFF.933_From_tsu_0_3212935_0 575 650 + CUFF.933_From_tsu_0_3212935_0 581 658 + CUFF.535_From_bur_0_1969548_0 66 134 + CUFF.765_From_rsch_4_4110791_0 37 105 + CUFF.765_From_rsch_4_4110791_0 37 107 + CUFF.765_From_rsch_4_4110791_0 41 105 + CUFF.765_From_rsch_4_4110791_0 41 107 + CUFF.765_From_rsch_4_4110791_0 41 109 + CUFF.765_From_rsch_4_4110791_0 47 109 + CUFF.909_From_wil_2_3052273_0 108 224 - CUFF.909_From_wil_2_3052273_0 124 196 - CUFF.909_From_wil_2_3052273_0 124 224 - CUFF.673_From_ler_0_4224097_0 447 520 + CUFF.673_From_ler_0_4224097_0 449 520 + CUFF.837_From_tsu_0_3215671_0 258 535 + CUFF.837_From_tsu_0_3215671_0 268 535 + CUFF.837_From_tsu_0_3215671_0 273 535 - CUFF.837_From_tsu_0_3215671_0 278 535 + CUFF.581_From_can_0_3218459_0 79 180 - CUFF.581_From_can_0_3218459_0 79 186 - CUFF.581_From_can_0_3218459_0 88 162 - CUFF.581_From_can_0_3218459_0 88 180 - CUFF.581_From_can_0_3218459_0 88 186 - CUFF.581_From_can_0_3218459_0 93 180 - CUFF.581_From_can_0_3218459_0 93 186 - CUFF.581_From_can_0_3218459_0 674 775 - CUFF.581_From_can_0_3218459_0 677 775 - CUFF.581_From_can_0_3218459_0 682 775 - CUFF.581_From_can_0_3218459_0 687 775 - CUFF.593_From_can_0_3270131_0 154 236 - CUFF.593_From_can_0_3270131_0 154 255 - CUFF.593_From_can_0_3270131_0 165 229 + CUFF.593_From_can_0_3270131_0 165 259 + CUFF.869_From_sf_2_2701328_0 196 474 - CUFF.869_From_sf_2_2701328_0 203 474 - CUFF.869_From_sf_2_2701328_0 205 474 - CUFF.971_From_zu_0_3255169_0 626 859 + CUFF.971_From_zu_0_3255169_0 630 859 + CUFF.971_From_zu_0_3255169_0 634 859 + CUFF.971_From_zu_0_3255169_0 638 851 - CUFF.971_From_zu_0_3255169_0 645 851 - CUFF.971_From_zu_0_3255169_0 648 851 - CUFF.971_From_zu_0_3255169_0 652 851 - CUFF.785_From_no_0_3128142_0 107 220 + CUFF.785_From_no_0_3128142_0 120 220 + CUFF.785_From_no_0_3128142_0 135 220 + CUFF.891_From_wil_2_3079625_0 48 385 - CUFF.891_From_wil_2_3079625_0 66 385 - CUFF.891_From_wil_2_3079625_0 71 385 - CUFF.753_From_oy_0_3121110_0 104 223 - CUFF.753_From_oy_0_3121110_0 107 219 + CUFF.753_From_oy_0_3121110_0 112 219 + CUFF.753_From_oy_0_3121110_0 112 231 + CUFF.753_From_oy_0_3121110_0 115 219 + CUFF.753_From_oy_0_3121110_0 115 231 + CUFF.753_From_oy_0_3121110_0 130 219 + CUFF.753_From_oy_0_3121110_0 130 231 + CUFF.753_From_oy_0_3121110_0 139 231 + CUFF.753_From_oy_0_3121110_0 140 225 - CUFF.547_From_bur_0_2032354_0 1228 1332 + CUFF.547_From_bur_0_2032354_0 1240 1332 - CUFF.547_From_bur_0_2032354_0 1249 1332 - CUFF.547_From_bur_0_2032354_0 1253 1332 + CUFF.849_From_tsu_0_3222297_0 130 272 - CUFF.933_From_tsu_0_3212935_0 575 658 + CUFF.535_From_bur_0_1969548_0 66 147 + CUFF.765_From_rsch_4_4110791_0 37 107 + CUFF.765_From_rsch_4_4110791_0 37 109 + CUFF.765_From_rsch_4_4110791_0 41 107 + CUFF.765_From_rsch_4_4110791_0 41 109 + CUFF.765_From_rsch_4_4110791_0 41 111 + CUFF.765_From_rsch_4_4110791_0 47 111 + CUFF.909_From_wil_2_3052273_0 124 209 - CUFF.581_From_can_0_3218459_0 79 186 - CUFF.581_From_can_0_3218459_0 79 192 - CUFF.581_From_can_0_3218459_0 88 186 - CUFF.581_From_can_0_3218459_0 88 192 - CUFF.581_From_can_0_3218459_0 93 186 - CUFF.581_From_can_0_3218459_0 93 192 - CUFF.581_From_can_0_3218459_0 674 780 - CUFF.581_From_can_0_3218459_0 677 780 - CUFF.581_From_can_0_3218459_0 682 780 - CUFF.581_From_can_0_3218459_0 687 780 - CUFF.753_From_oy_0_3121110_0 115 234 + CUFF.753_From_oy_0_3121110_0 130 234 + CUFF.753_From_oy_0_3121110_0 139 234 + CUFF.753_From_oy_0_3121110_0 140 232 - CUFF.765_From_rsch_4_4110791_0 37 109 + CUFF.765_From_rsch_4_4110791_0 37 111 + CUFF.765_From_rsch_4_4110791_0 41 109 + CUFF.765_From_rsch_4_4110791_0 41 111 + CUFF.765_From_rsch_4_4110791_0 41 126 + CUFF.765_From_rsch_4_4110791_0 47 126 + CUFF.765_From_rsch_4_4110791_0 37 111 + CUFF.765_From_rsch_4_4110791_0 41 111 + CUFF.765_From_rsch_4_4110791_0 41 126 + CUFF.765_From_rsch_4_4110791_0 41 126 + -- done -- -- cov -- CUFF.587_From_ct_1_3277323_0 29 142 + CUFF.847_From_tsu_0_3242833_1 439 658 + CUFF.939_From_ws_0_3365892_0 43 103 + CUFF.537_From_bur_0_1999718_0 102 170 + CUFF.815_From_sf_2_2671632_0 762 868 + CUFF.645_From_edi_0_2888586_0 174 380 - CUFF.645_From_edi_0_2888586_0 686 771 + CUFF.645_From_edi_0_2888586_0 691 771 + CUFF.869_From_sf_2_2701328_0 561 619 + CUFF.843_From_rsch_4_4292194_1 424 809 + CUFF.797_From_sf_2_2676583_0 96 713 - CUFF.953_From_ws_0_3382500_0 1768 2372 - CUFF.587_From_ct_1_3277323_0 29 144 + CUFF.911_From_wil_2_3068737_0 277 439 - CUFF.933_From_tsu_0_3212935_0 167 349 - CUFF.933_From_tsu_0_3212935_0 207 372 + CUFF.627_From_edi_0_2889434_0 580 701 + CUFF.593_From_can_0_3270131_0 154 241 - CUFF.645_From_edi_0_2888586_0 693 787 + CUFF.869_From_sf_2_2701328_0 335 395 + CUFF.607_From_edi_0_2891226_0 466 735 - CUFF.859_From_tsu_0_3215737_0 421 487 + CUFF.877_From_sf_2_2687786_0 475 1008 - CUFF.839_From_sf_2_2680171_0 324 491 - CUFF.661_From_kn_0_3819922_1 171 388 - CUFF.661_From_kn_0_3819922_1 456 567 - CUFF.587_From_ct_1_3277323_0 29 180 + CUFF.727_From_hi_0_2953648_0 948 1135 + CUFF.933_From_tsu_0_3212935_0 207 375 + CUFF.933_From_tsu_0_3212935_0 754 945 - CUFF.933_From_tsu_0_3212935_0 757 945 - CUFF.603_From_bur_0_2025286_0 90 1043 - CUFF.603_From_bur_0_2025286_0 1127 1414 + CUFF.961_From_wu_0_2837848_0 203 299 - CUFF.563_From_bur_0_2020452_0 115 393 - CUFF.971_From_zu_0_3255169_0 448 845 - CUFF.785_From_no_0_3128142_0 1641 1747 + CUFF.547_From_bur_0_2032354_0 42 202 + CUFF.859_From_tsu_0_3215737_0 125 574 - CUFF.877_From_sf_2_2687786_0 198 1008 - CUFF.559_From_can_0_3231205_0 99 603 - CUFF.587_From_ct_1_3277323_0 29 185 + CUFF.727_From_hi_0_2953648_0 840 998 + CUFF.749_From_oy_0_3162092_0 830 1130 - CUFF.691_From_hi_0_2961678_0 107 632 - CUFF.919_From_ws_0_3347582_0 371 675 + CUFF.585_From_ct_1_3247037_0 216 460 - CUFF.673_From_ler_0_4224097_0 343 510 + CUFF.897_From_ws_0_3298283_0 271 436 - CUFF.981_From_zu_0_3289907_1 241 401 - CUFF.603_From_bur_0_2025286_0 1652 1754 + CUFF.593_From_can_0_3270131_0 468 654 - CUFF.839_From_sf_2_2680171_0 324 749 - CUFF.587_From_ct_1_3277323_0 29 187 + CUFF.611_From_edi_0_2921730_0 136 364 + CUFF.933_From_tsu_0_3212935_0 102 386 - CUFF.933_From_tsu_0_3212935_0 694 929 + CUFF.941_From_wu_0_2824308_0 371 493 - CUFF.901_From_wil_2_3088151_0 106 1084 - CUFF.557_From_can_0_3234869_1 123 351 + CUFF.957_From_ws_0_3381390_0 273 618 - CUFF.957_From_ws_0_3381390_0 308 631 + CUFF.627_From_edi_0_2889434_0 93 832 - CUFF.627_From_edi_0_2889434_0 204 596 + CUFF.981_From_zu_0_3289907_1 262 943 + CUFF.825_From_sf_2_2700286_0 539 822 + CUFF.603_From_bur_0_2025286_0 82 1579 - CUFF.603_From_bur_0_2025286_0 90 1579 - CUFF.815_From_sf_2_2671632_0 437 914 - CUFF.581_From_can_0_3218459_0 112 733 - CUFF.581_From_can_0_3218459_0 125 643 + CUFF.895_From_tsu_0_3215821_0 354 619 + CUFF.773_From_po_0_3606391_0 682 1510 + CUFF.839_From_sf_2_2680171_0 443 772 + CUFF.587_From_ct_1_3277323_0 29 192 + CUFF.611_From_edi_0_2921730_0 130 385 + CUFF.611_From_edi_0_2921730_0 273 403 + CUFF.933_From_tsu_0_3212935_0 123 372 + CUFF.673_From_ler_0_4224097_0 352 750 - CUFF.591_From_can_0_3239881_0 304 580 + CUFF.961_From_wu_0_2837848_0 1228 1357 - CUFF.961_From_wu_0_2837848_0 1242 1357 - CUFF.645_From_edi_0_2888586_0 241 655 - CUFF.843_From_rsch_4_4292194_1 424 868 + CUFF.547_From_bur_0_2032354_0 42 827 + CUFF.959_From_ws_0_3344070_0 283 648 - CUFF.587_From_ct_1_3277323_0 29 716 + CUFF.933_From_tsu_0_3212935_0 123 375 + CUFF.875_From_wil_2_3052951_0 77 840 + CUFF.603_From_bur_0_2025286_0 2118 2351 - CUFF.645_From_edi_0_2888586_0 398 810 - CUFF.959_From_ws_0_3344070_0 111 249 - CUFF.587_From_ct_1_3277323_0 29 720 + CUFF.727_From_hi_0_2953648_0 357 617 - CUFF.933_From_tsu_0_3212935_0 167 610 - CUFF.585_From_ct_1_3247037_0 105 469 + CUFF.725_From_no_0_3116640_0 266 1051 - CUFF.591_From_can_0_3239881_0 311 745 - CUFF.961_From_wu_0_2837848_0 207 622 + CUFF.785_From_no_0_3128142_0 206 1243 - CUFF.547_From_bur_0_2032354_0 153 1309 - CUFF.959_From_ws_0_3344070_0 428 813 + CUFF.587_From_ct_1_3277323_0 29 733 + CUFF.985_From_zu_0_3280213_0 754 1582 + CUFF.537_From_bur_0_1999718_0 378 745 + CUFF.837_From_tsu_0_3215671_0 86 498 + CUFF.603_From_bur_0_2025286_0 381 1417 + CUFF.711_From_no_0_3088052_0 202 780 - CUFF.839_From_sf_2_2680171_0 324 768 - CUFF.839_From_sf_2_2680171_0 589 964 - CUFF.587_From_ct_1_3277323_0 29 751 + CUFF.919_From_ws_0_3347582_0 192 688 + CUFF.957_From_ws_0_3381390_0 308 655 + CUFF.725_From_no_0_3116640_0 256 1094 + CUFF.837_From_tsu_0_3215671_0 86 508 + CUFF.961_From_wu_0_2837848_0 500 1305 - CUFF.815_From_sf_2_2671632_0 441 653 + CUFF.871_From_rsch_4_4266550_0 725 1094 - CUFF.593_From_can_0_3270131_0 331 985 + CUFF.645_From_edi_0_2888586_0 241 810 - CUFF.661_From_kn_0_3819922_1 454 1242 - CUFF.587_From_ct_1_3277323_0 29 754 + CUFF.933_From_tsu_0_3212935_0 207 604 + CUFF.919_From_ws_0_3347582_0 169 1008 - CUFF.585_From_ct_1_3247037_0 79 489 + CUFF.825_From_sf_2_2700286_0 1421 2275 - CUFF.837_From_tsu_0_3215671_0 86 611 + CUFF.859_From_tsu_0_3215737_0 129 440 + CUFF.587_From_ct_1_3277323_0 29 821 + CUFF.587_From_ct_1_3277323_0 114 841 + CUFF.919_From_ws_0_3347582_0 598 1166 - CUFF.785_From_no_0_3128142_0 206 1739 - CUFF.785_From_no_0_3128142_0 255 1252 + CUFF.785_From_no_0_3128142_0 592 1268 + CUFF.711_From_no_0_3088052_0 231 805 - CUFF.587_From_ct_1_3277323_0 29 824 + CUFF.749_From_oy_0_3162092_0 964 1558 + CUFF.933_From_tsu_0_3212935_0 167 752 - CUFF.603_From_bur_0_2025286_0 85 1779 - CUFF.603_From_bur_0_2025286_0 1646 2203 - CUFF.587_From_ct_1_3277323_0 29 841 + CUFF.749_From_oy_0_3162092_0 323 1318 - CUFF.933_From_tsu_0_3212935_0 126 897 - CUFF.933_From_tsu_0_3212935_0 167 897 - CUFF.603_From_bur_0_2025286_0 90 1929 - CUFF.785_From_no_0_3128142_0 592 1473 + CUFF.959_From_ws_0_3344070_0 269 785 - CUFF.587_From_ct_1_3277323_0 29 851 + CUFF.603_From_bur_0_2025286_0 90 1947 - CUFF.603_From_bur_0_2025286_0 381 1709 + CUFF.961_From_wu_0_2837848_0 476 1357 - CUFF.961_From_wu_0_2837848_0 480 1357 - CUFF.785_From_no_0_3128142_0 736 1499 + CUFF.959_From_ws_0_3344070_0 266 801 - CUFF.587_From_ct_1_3277323_0 29 854 + CUFF.587_From_ct_1_3277323_0 132 984 + CUFF.749_From_oy_0_3162092_0 694 1314 + CUFF.603_From_bur_0_2025286_0 1080 1788 + CUFF.603_From_bur_0_2025286_0 1646 2328 - CUFF.961_From_wu_0_2837848_0 32 1118 - CUFF.587_From_ct_1_3277323_0 29 971 + CUFF.749_From_oy_0_3162092_0 581 1314 + CUFF.587_From_ct_1_3277323_0 29 973 + CUFF.749_From_oy_0_3162092_0 443 1124 + CUFF.877_From_sf_2_2687786_0 1098 1999 + CUFF.959_From_ws_0_3344070_0 75 808 + CUFF.661_From_kn_0_3819922_1 454 1416 - CUFF.587_From_ct_1_3277323_0 29 984 + CUFF.921_From_wil_2_3077447_0 97 1186 + CUFF.785_From_no_0_3128142_0 602 1531 + CUFF.959_From_ws_0_3344070_0 75 813 + CUFF.587_From_ct_1_3277323_0 29 988 + CUFF.825_From_sf_2_2700286_0 265 1000 - CUFF.603_From_bur_0_2025286_0 1487 2328 - CUFF.587_From_ct_1_3277323_0 29 990 + CUFF.603_From_bur_0_2025286_0 90 2217 - CUFF.603_From_bur_0_2025286_0 93 2217 - CUFF.785_From_no_0_3128142_0 578 1531 + CUFF.587_From_ct_1_3277323_0 29 1125 + CUFF.587_From_ct_1_3277323_0 29 1131 + CUFF.749_From_oy_0_3162092_0 581 1558 + CUFF.587_From_ct_1_3277323_0 29 1133 + CUFF.587_From_ct_1_3277323_0 29 1155 + CUFF.825_From_sf_2_2700286_0 632 2133 - CUFF.825_From_sf_2_2700286_0 679 2133 - CUFF.785_From_no_0_3128142_0 683 1626 + CUFF.587_From_ct_1_3277323_0 29 1165 + CUFF.587_From_ct_1_3277323_0 29 1169 + CUFF.661_From_kn_0_3819922_1 638 1397 + CUFF.785_From_no_0_3128142_0 265 1631 + CUFF.603_From_bur_0_2025286_0 71 2355 + CUFF.785_From_no_0_3128142_0 753 1816 + CUFF.661_From_kn_0_3819922_1 283 1360 + CUFF.661_From_kn_0_3819922_1 200 1397 + CUFF.661_From_kn_0_3819922_1 169 1712 + -- done -- -- buf -- -- done -- Reporting potential splice junctions...done Reported 1271 total possible splices