nohup: ignoring input reference: ngene.fa tophat --num-threads 4 --max-multihits 10 --coverage-search --microexon-search -o all18/ ngene.fa all18//novel.all.flt_1.fq [Mon Apr 4 16:25:10 2011] Beginning TopHat run (v1.1.4) ----------------------------------------------- [Mon Apr 4 16:25:10 2011] Preparing output location all18/// [Mon Apr 4 16:25:10 2011] Checking for Bowtie index files [Mon Apr 4 16:25:10 2011] Checking for reference FASTA file Warning: Could not find FASTA file ngene.fa.fa [Mon Apr 4 16:25:10 2011] Reconstituting reference FASTA file from Bowtie index [Mon Apr 4 16:25:10 2011] Checking for Bowtie Bowtie version: 0.12.7.0 [Mon Apr 4 16:25:10 2011] Checking for Samtools Samtools version: 0.1.7.0 [Mon Apr 4 16:25:10 2011] Checking reads min read length: 78bp, max read length: 78bp format: fastq quality scale: phred33 (default) [Mon Apr 4 16:31:05 2011] Mapping reads against ngene.fa with Bowtie [Mon Apr 4 16:32:26 2011] Joining segment hits [Mon Apr 4 16:36:54 2011] Mapping reads against ngene.fa with Bowtie(1/3) [Mon Apr 4 16:37:56 2011] Mapping reads against ngene.fa with Bowtie(2/3) [Mon Apr 4 16:39:02 2011] Mapping reads against ngene.fa with Bowtie(3/3) [Mon Apr 4 16:40:09 2011] Searching for junctions via segment mapping [Mon Apr 4 16:46:54 2011] Retrieving sequences for splices [Mon Apr 4 16:46:54 2011] Indexing splices [Mon Apr 4 16:46:55 2011] Mapping reads against segment_juncs with Bowtie [Mon Apr 4 16:47:40 2011] Mapping reads against segment_juncs with Bowtie [Mon Apr 4 16:48:30 2011] Mapping reads against segment_juncs with Bowtie [Mon Apr 4 16:49:23 2011] Joining segment hits [Mon Apr 4 16:49:59 2011] Reporting output tracks ----------------------------------------------- Run complete [00:25:27 elapsed] cufflinks -p 4 -o all18/ -r ngene.fa all18//accepted_hits.bam [16:52:17] Inspecting reads and determining fragment length distribution. > Processing Locus CUFF.523_From_bur_0_1804399X> [ ] > Processing Locus CUFF.525_From_bur_0_1863298X> [ ] > Processing Locus CUFF.527_From_bur_0_1967596X> [ ] > Processing Locus CUFF.529_From_bur_0_1873494X> [ ] > Processing Locus CUFF.531_From_bur_0_1868430X> [ ] > Processing Locus CUFF.533_From_bur_0_2020452X> [ ] > Processing Locus CUFF.535_From_bur_0_1969548X> [ ] > Processing Locus CUFF.537_From_bur_0_1999718X> [ ] > Processing Locus CUFF.539_From_bur_0_2021834X> [ ] > Processing Locus CUFF.541_From_can_0_3059433X> [ ] > Processing Locus CUFF.543_From_can_0_3017860X> [* ] > Processing Locus CUFF.545_From_bur_0_1856286X> [* ] > Processing Locus CUFF.547_From_bur_0_2032354X> [* ] > Processing Locus CUFF.549_From_can_0_3216099X> [* ] > Processing Locus CUFF.551_From_can_0_3122480X> [* ] > Processing Locus CUFF.553_From_can_0_3223655X> [* ] > Processing Locus CUFF.555_From_can_0_3217045X> [* ] > Processing Locus CUFF.557_From_can_0_3234869X> [* ] > Processing Locus CUFF.559_From_can_0_3231205X> [* ] > Processing Locus CUFF.561_From_can_0_3189753X> [** ] > Processing Locus CUFF.563_From_bur_0_2020452X> [** ] > Processing Locus CUFF.565_From_can_0_3257137X> [** ] > Processing Locus CUFF.567_From_can_0_3258779X> [** ] > Processing Locus CUFF.569_From_can_0_3263637X> [** ] > Processing Locus CUFF.571_From_can_0_3076940X> [** ] > Processing Locus CUFF.573_From_can_0_3233581X> [** ] > Processing Locus CUFF.575_From_ct_1_3082021_X> [** ] > Processing Locus CUFF.577_From_ct_1_3125173_X> [** ] > Processing Locus CUFF.579_From_ct_1_3133451_X> [** ] > Processing Locus CUFF.581_From_can_0_3218459X> [*** ] > Processing Locus CUFF.583_From_ct_1_3302721_X> [*** ] > Processing Locus CUFF.585_From_ct_1_3247037_X> [*** ] > Processing Locus CUFF.587_From_ct_1_3277323_X> [*** ] > Processing Locus CUFF.589_From_edi_0_2723255X> [*** ] > Processing Locus CUFF.591_From_can_0_3239881X> [*** ] > Processing Locus CUFF.593_From_can_0_3270131X> [*** ] > Processing Locus CUFF.595_From_ct_1_3302721_X> [*** ] > Processing Locus CUFF.597_From_edi_0_2759827X> [*** ] > Processing Locus CUFF.599_From_edi_0_2744702X> [**** ] > Processing Locus CUFF.601_From_edi_0_2934714X> [**** ] > Processing Locus CUFF.603_From_bur_0_2025286X> [**** ] > Processing Locus CUFF.604_From_edi_0_2934714X> [**** ] > Processing Locus CUFF.607_From_edi_0_2891226X> [**** ] > Processing Locus CUFF.609_From_hi_0_2755116_X> [**** ] > Processing Locus CUFF.611_From_edi_0_2921730X> [**** ] > Processing Locus CUFF.613_From_hi_0_2773206_X> [**** ] > Processing Locus CUFF.615_From_edi_0_2932438X> [**** ] > Processing Locus CUFF.617_From_edi_0_2918156X> [**** ] > Processing Locus CUFF.619_From_edi_0_2871668X> [***** ] > Processing Locus CUFF.621_From_edi_0_2934714X> [***** ] > Processing Locus CUFF.623_From_hi_0_2778596_X> [***** ] > Processing Locus CUFF.625_From_hi_0_2964064_X> [***** ] > Processing Locus CUFF.627_From_edi_0_2889434X> [***** ] > Processing Locus CUFF.629_From_kn_0_3594465_X> [***** ] > Processing Locus CUFF.631_From_hi_0_2959094_X> [***** ] > Processing Locus CUFF.633_From_hi_0_2959094_X> [***** ] > Processing Locus CUFF.635_From_ct_1_3241157_X> [***** ] > Processing Locus CUFF.637_From_kn_0_3626969_X> [****** ] > Processing Locus CUFF.639_From_hi_0_2916184_X> [****** ] > Processing Locus CUFF.641_From_kn_0_3605300_X> [****** ] > Processing Locus CUFF.643_From_kn_0_3799876_X> [****** ] > Processing Locus CUFF.645_From_edi_0_2888586X> [****** ] > Processing Locus CUFF.647_From_kn_0_3802200_X> [****** ] > Processing Locus CUFF.649_From_kn_0_3617271_X> [****** ] > Processing Locus CUFF.651_From_ler_0_3967940X> [****** ] > Processing Locus CUFF.653_From_kn_0_3751597_X> [****** ] > Processing Locus CUFF.655_From_hi_0_2795398_X> [****** ] > Processing Locus CUFF.657_From_ler_0_3998132X> [******* ] > Processing Locus CUFF.659_From_ler_0_4153595X> [******* ] > Processing Locus CUFF.661_From_kn_0_3819922_X> [******* ] > Processing Locus CUFF.663_From_kn_0_3613403_X> [******* ] > Processing Locus CUFF.665_From_hi_0_2939638_X> [******* ] > Processing Locus CUFF.666_From_ler_0_4004770X> [******* ] > Processing Locus CUFF.669_From_ler_0_4225073X> [******* ] > Processing Locus CUFF.671_From_edi_0_2859720X> [******* ] > Processing Locus CUFF.673_From_ler_0_4224097X> [******* ] > Processing Locus CUFF.675_From_mt_0_4213448_X> [******** ] > Processing Locus CUFF.677_From_ct_1_3133995_X> [******** ] > Processing Locus CUFF.679_From_ler_0_3998410X> [******** ] > Processing Locus CUFF.681_From_mt_0_4399784_X> [******** ] > Processing Locus CUFF.683_From_ler_0_4165287X> [******** ] > Processing Locus CUFF.685_From_mt_0_4231054_X> [******** ] > Processing Locus CUFF.687_From_mt_0_4230874_X> [******** ] > Processing Locus CUFF.689_From_ler_0_4018856X> [******** ] > Processing Locus CUFF.691_From_hi_0_2961678_X> [******** ] > Processing Locus CUFF.693_From_no_0_2934639_X> [********* ] > Processing Locus CUFF.695_From_mt_0_4217716_X> [********* ] > Processing Locus CUFF.697_From_mt_0_4229662_X> [********* ] > Processing Locus CUFF.699_From_no_0_2905273_X> [********* ] > Processing Locus CUFF.701_From_no_0_2951521_X> [********* ] > Processing Locus CUFF.703_From_no_0_2885444_X> [********* ] > Processing Locus CUFF.705_From_no_0_3113578_X> [********* ] > Processing Locus CUFF.707_From_no_0_2959683_X> [********* ] > Processing Locus CUFF.709_From_no_0_3101262_X> [********* ] > Processing Locus CUFF.711_From_no_0_3088052_X> [********* ] > Processing Locus CUFF.713_From_no_0_3116320_X> [********** ] > Processing Locus CUFF.715_From_oy_0_3098144_X> [********** ] > Processing Locus CUFF.717_From_oy_0_2966542_X> [********** ] > Processing Locus CUFF.719_From_oy_0_2936927_X> [********** ] > Processing Locus CUFF.721_From_no_0_3120392_X> [********** ] > Processing Locus CUFF.723_From_po_0_3306688_X> [********** ] > Processing Locus CUFF.725_From_no_0_3116640_X> [********** ] > Processing Locus CUFF.727_From_hi_0_2953648_X> [********** ] > Processing Locus CUFF.729_From_oy_0_3001818_X> [********** ] > Processing Locus CUFF.731_From_po_0_3324652_X> [*********** ] > Processing Locus CUFF.733_From_no_0_2956652_X> [*********** ] > Processing Locus CUFF.735_From_po_0_3293868_X> [*********** ] > Processing Locus CUFF.737_From_ct_1_3132277_X> [*********** ] > Processing Locus CUFF.739_From_po_0_3340213_X> [*********** ] > Processing Locus CUFF.741_From_po_0_3382155_X> [*********** ] > Processing Locus CUFF.743_From_po_0_3330421_X> [*********** ] > Processing Locus CUFF.745_From_po_0_3507160_X> [*********** ] > Processing Locus CUFF.747_From_po_0_3299272_X> [*********** ] > Processing Locus CUFF.749_From_oy_0_3162092_X> [*********** ] > Processing Locus CUFF.751_From_rsch_4_403485X> [************ ] > Processing Locus CUFF.753_From_oy_0_3121110_X> [************ ] > Processing Locus CUFF.755_From_mt_0_4193196_X> [************ ] > Processing Locus CUFF.757_From_po_0_3372769_X> [************ ] > Processing Locus CUFF.759_From_no_0_2936769_X> [************ ] > Processing Locus CUFF.761_From_po_0_3606391_X> [************ ] > Processing Locus CUFF.763_From_rsch_4_403203X> [************ ] > Processing Locus CUFF.765_From_rsch_4_411079X> [************ ] > Processing Locus CUFF.767_From_rsch_4_411814X> [************ ] > Processing Locus CUFF.769_From_rsch_4_410762X> [************* ] > Processing Locus CUFF.771_From_po_0_3332479_X> [************* ] > Processing Locus CUFF.773_From_po_0_3606391_X> [************* ] > Processing Locus CUFF.775_From_rsch_4_409124X> [************* ] > Processing Locus CUFF.777_From_rsch_4_408506X> [************* ] > Processing Locus CUFF.779_From_rsch_4_421454X> [************* ] > Processing Locus CUFF.781_From_rsch_4_427756X> [************* ] > Processing Locus CUFF.783_From_oy_0_2965192_X> [************* ] > Processing Locus CUFF.785_From_no_0_3128142_X> [************* ] > Processing Locus CUFF.787_From_rsch_4_427756X> [************* ] > Processing Locus CUFF.789_From_rsch_4_427544X> [************** ] > Processing Locus CUFF.791_From_rsch_4_425553X> [************** ] > Processing Locus CUFF.793_From_sf_2_2504999_X> [************** ] > Processing Locus CUFF.795_From_rsch_4_429714X> [************** ] > Processing Locus CUFF.797_From_sf_2_2676583_X> [************** ] > Processing Locus CUFF.799_From_sf_2_2662232_X> [************** ] > Processing Locus CUFF.801_From_sf_2_2532172_X> [************** ] > Processing Locus CUFF.803_From_po_0_3573778_X> [************** ] > Processing Locus CUFF.805_From_sf_2_2486157_X> [************** ] > Processing Locus CUFF.807_From_sf_2_2488391_X> [*************** ] > Processing Locus CUFF.809_From_sf_2_2682779_X> [*************** ] > Processing Locus CUFF.811_From_sf_2_2459023_X> [*************** ] > Processing Locus CUFF.813_From_tsu_0_2970253X> [*************** ] > Processing Locus CUFF.815_From_sf_2_2671632_X> [*************** ] > Processing Locus CUFF.817_From_sf_2_2524453_X> [*************** ] > Processing Locus CUFF.819_From_tsu_0_3036945X> [*************** ] > Processing Locus CUFF.821_From_tsu_0_3175121X> [*************** ] > Processing Locus CUFF.823_From_tsu_0_3175121X> [*************** ] > Processing Locus CUFF.825_From_sf_2_2700286_X> [*************** ] > Processing Locus CUFF.827_From_rsch_4_427728X> [**************** ] > Processing Locus CUFF.829_From_tsu_0_3135135X> [**************** ] > Processing Locus CUFF.831_From_sf_2_2687774_X> [**************** ] > Processing Locus CUFF.833_From_tsu_0_3208747X> [**************** ] > Processing Locus CUFF.835_From_tsu_0_3211741X> [**************** ] > Processing Locus CUFF.837_From_tsu_0_3215671X> [**************** ] > Processing Locus CUFF.839_From_sf_2_2680171_X> [**************** ] > Processing Locus CUFF.841_From_tsu_0_3243273X> [**************** ] > Processing Locus CUFF.843_From_rsch_4_429219X> [**************** ] > Processing Locus CUFF.845_From_tsu_0_3243273X> [***************** ] > Processing Locus CUFF.847_From_tsu_0_3242833X> [***************** ] > Processing Locus CUFF.849_From_tsu_0_3222297X> [***************** ] > Processing Locus CUFF.851_From_wil_2_2906137X> [***************** ] > Processing Locus CUFF.853_From_wil_2_2920529X> [***************** ] > Processing Locus CUFF.855_From_wil_2_2915899X> [***************** ] > Processing Locus CUFF.857_From_sf_2_2653966_X> [***************** ] > Processing Locus CUFF.859_From_tsu_0_3215737X> [***************** ] > Processing Locus CUFF.861_From_mt_0_4528444_X> [***************** ] > Processing Locus CUFF.863_From_wil_2_3008461X> [****************** ] > Processing Locus CUFF.865_From_wil_2_2892485X> [****************** ] > Processing Locus CUFF.867_From_wil_2_2945095X> [****************** ] > Processing Locus CUFF.869_From_sf_2_2701328_X> [****************** ] > Processing Locus CUFF.871_From_rsch_4_426655X> [****************** ] > Processing Locus CUFF.873_From_wil_2_3050523X> [****************** ] > Processing Locus CUFF.875_From_wil_2_3052951X> [****************** ] > Processing Locus CUFF.877_From_sf_2_2687786_X> [****************** ] > Processing Locus CUFF.879_From_rsch_4_405516X> [****************** ] > Processing Locus CUFF.881_From_wil_2_2925323X> [****************** ] > Processing Locus CUFF.883_From_wil_2_3066229X> [******************* ] > Processing Locus CUFF.885_From_wil_2_3063473X> [******************* ] > Processing Locus CUFF.887_From_wil_2_3054893X> [******************* ] > Processing Locus CUFF.889_From_ws_0_3181530_X> [******************* ] > Processing Locus CUFF.891_From_wil_2_3079625X> [******************* ] > Processing Locus CUFF.893_From_ws_0_3190679_X> [******************* ] > Processing Locus CUFF.895_From_tsu_0_3215821X> [******************* ] > Processing Locus CUFF.897_From_ws_0_3298283_X> [******************* ] > Processing Locus CUFF.899_From_ws_0_3190963_X> [******************* ] > Processing Locus CUFF.901_From_wil_2_3088151X> [******************** ] > Processing Locus CUFF.903_From_wil_2_3089541X> [******************** ] > Processing Locus CUFF.905_From_ws_0_3339092_X> [******************** ] > Processing Locus CUFF.907_From_ws_0_3182508_X> [******************** ] > Processing Locus CUFF.909_From_wil_2_3052273X> [******************** ] > Processing Locus CUFF.911_From_wil_2_3068737X> [******************** ] > Processing Locus CUFF.913_From_wil_2_2834553X> [******************** ] > Processing Locus CUFF.915_From_ws_0_3349444_X> [******************** ] > Processing Locus CUFF.917_From_ws_0_3371988_X> [******************** ] > Processing Locus CUFF.919_From_ws_0_3347582_X> [******************** ] > Processing Locus CUFF.921_From_wil_2_3077447X> [********************* ] > Processing Locus CUFF.923_From_ws_0_3382728_X> [********************* ] > Processing Locus CUFF.925_From_ws_0_3371988_X> [********************* ] > Processing Locus CUFF.927_From_wu_0_2655481_X> [********************* ] > Processing Locus CUFF.929_From_ws_0_3382728_X> [********************* ] > Processing Locus CUFF.931_From_wu_0_2679395_X> [********************* ] > Processing Locus CUFF.933_From_tsu_0_3212935X> [********************* ] > Processing Locus CUFF.935_From_ws_0_3380934_X> [********************* ] > Processing Locus CUFF.937_From_ws_0_3373604_X> [********************* ] > Processing Locus CUFF.939_From_ws_0_3365892_X> [********************** ] > Processing Locus CUFF.941_From_wu_0_2824308_X> [********************** ] > Processing Locus CUFF.943_From_zu_0_3075813_X> [********************** ] > Processing Locus CUFF.945_From_wu_0_2678387_X> [********************** ] > Processing Locus CUFF.947_From_wu_0_2654219_X> [********************** ] > Processing Locus CUFF.949_From_wu_0_2687576_X> [********************** ] > Processing Locus CUFF.951_From_wil_2_3087183X> [********************** ] > Processing Locus CUFF.953_From_ws_0_3382500_X> [********************** ] > Processing Locus CUFF.955_From_ws_0_3340488_X> [********************** ] > Processing Locus CUFF.957_From_ws_0_3381390_X> [********************** ] > Processing Locus CUFF.959_From_ws_0_3344070_X> [*********************** ] > Processing Locus CUFF.961_From_wu_0_2837848_X> [*********************** ] > Processing Locus CUFF.963_From_zu_0_3092045_X> [*********************** ] > Processing Locus CUFF.965_From_zu_0_3238769_X> [*********************** ] > Processing Locus CUFF.967_From_zu_0_3022629_X> [*********************** ] > Processing Locus CUFF.969_From_zu_0_3190435_X> [*********************** ] > Processing Locus CUFF.971_From_zu_0_3255169_X> [*********************** ] > Processing Locus CUFF.973_From_zu_0_3242889_X> [*********************** ] > Processing Locus CUFF.975_From_zu_0_3259399_X> [*********************** ] > Processing Locus CUFF.977_From_zu_0_3255503_X> [************************ ] > Processing Locus CUFF.979_From_zu_0_3278243_X> [************************ ] > Processing Locus CUFF.981_From_zu_0_3289907_X> [************************ ] > Processing Locus CUFF.983_From_zu_0_3243571_X> [************************ ] > Processing Locus CUFF.985_From_zu_0_3280213_X> [************************ ] > Processing Locus CUFF.987_From_zu_0_3118546_X> [************************ ] > Processing Locus CUFF.989_From_zu_0_3289907_X> [************************ ] > Processing Locus CUFF.991_From_zu_0_3277661_X> [************************ ] > Processing Locus CUFF.993_From_zu_0_3082201_X> [************************ ] > Processed 236 loci. [*************************] 100% > Map Properties: > Total Map Mass: 115029.13 > Read Type: 78bp single-end > Fragment Length Distribution: Gaussian (default) > Estimated Mean: 210.19 > Estimated Std Dev: 70.09 [16:52:17] Assembling transcripts and estimating abundances. > Processing Locus CUFF.523_From_bur_0_1804399 [ ] 0% > Processing Locus CUFF.525_From_bur_0_1863298 [ ] 0% > Processing Locus CUFF.527_From_bur_0_1967596 [ ] 0% > Processing Locus CUFF.529_From_bur_0_1873494 [ ] 1% > Processing Locus CUFF.531_From_bur_0_1868430 [ ] 1% > Processing Locus CUFF.533_From_bur_0_2020452 [ ] 2% > Processing Locus CUFF.535_From_bur_0_1969548 [ ] 2% > Processing Locus CUFF.537_From_bur_0_1999718 [ ] 2% > Processing Locus CUFF.539_From_bur_0_2021834 [ ] 3% > Processing Locus CUFF.541_From_can_0_3059433 [ ] 3% > Processing Locus CUFF.543_From_can_0_3017860 [* ] 4% > Processing Locus CUFF.545_From_bur_0_1856286 [* ] 4% > Processing Locus CUFF.547_From_bur_0_2032354 [* ] 5% > Processing Locus CUFF.549_From_can_0_3216099 [* ] 5% > Processing Locus CUFF.551_From_can_0_3122480 [* ] 5% > Processing Locus CUFF.553_From_can_0_3223655 [* ] 6% > Processing Locus CUFF.555_From_can_0_3217045 [* ] 6% > Processing Locus CUFF.557_From_can_0_3234869 [* ] 7% > Processing Locus CUFF.559_From_can_0_3231205 [* ] 7% > Processing Locus CUFF.561_From_can_0_3189753 [** ] 8% > Processing Locus CUFF.563_From_bur_0_2020452 [** ] 8% > Processing Locus CUFF.565_From_can_0_3257137 [** ] 8% > Processing Locus CUFF.567_From_can_0_3258779 [** ] 9% > Processing Locus CUFF.569_From_can_0_3263637 [** ] 9% > Processing Locus CUFF.571_From_can_0_3076940 [** ] 10% > Processing Locus CUFF.573_From_can_0_3233581 [** ] 10% > Processing Locus CUFF.575_From_ct_1_3082021_ [** ] 11% > Processing Locus CUFF.577_From_ct_1_3125173_ [** ] 11% > Processing Locus CUFF.579_From_ct_1_3133451_ [** ] 11% > Processing Locus CUFF.581_From_can_0_3218459 [*** ] 12% > Processing Locus CUFF.583_From_ct_1_3302721_ [*** ] 12% > Processing Locus CUFF.585_From_ct_1_3247037_ [*** ] 13% > Processing Locus CUFF.587_From_ct_1_3277323_ [*** ] 13% > Processing Locus CUFF.589_From_edi_0_2723255 [*** ] 13% > Processing Locus CUFF.591_From_can_0_3239881 [*** ] 14% > Processing Locus CUFF.593_From_can_0_3270131 [*** ] 14% > Processing Locus CUFF.595_From_ct_1_3302721_ [*** ] 15% > Processing Locus CUFF.597_From_edi_0_2759827 [*** ] 15% > Processing Locus CUFF.599_From_edi_0_2744702 [**** ] 16% > Processing Locus CUFF.601_From_edi_0_2934714 [**** ] 16% > Processing Locus CUFF.603_From_bur_0_2025286 [**** ] 16% > Processing Locus CUFF.604_From_edi_0_2934714 [**** ] 17% > Processing Locus CUFF.607_From_edi_0_2891226 [**** ] 17% > Processing Locus CUFF.609_From_hi_0_2755116_ [**** ] 18% > Processing Locus CUFF.611_From_edi_0_2921730 [**** ] 18% > Processing Locus CUFF.613_From_hi_0_2773206_ [**** ] 19% > Processing Locus CUFF.615_From_edi_0_2932438 [**** ] 19% > Processing Locus CUFF.617_From_edi_0_2918156 [**** ] 19% > Processing Locus CUFF.619_From_edi_0_2871668 [***** ] 20% > Processing Locus CUFF.621_From_edi_0_2934714 [***** ] 20% > Processing Locus CUFF.623_From_hi_0_2778596_ [***** ] 21% > Processing Locus CUFF.625_From_hi_0_2964064_ [***** ] 21% > Processing Locus CUFF.627_From_edi_0_2889434 [***** ] 22% > Processing Locus CUFF.629_From_kn_0_3594465_ [***** ] 22% > Processing Locus CUFF.631_From_hi_0_2959094_ [***** ] 22% > Processing Locus CUFF.633_From_hi_0_2959094_ [***** ] 23% > Processing Locus CUFF.635_From_ct_1_3241157_ [***** ] 23% > Processing Locus CUFF.637_From_kn_0_3626969_ [****** ] 24% > Processing Locus CUFF.639_From_hi_0_2916184_ [****** ] 24% > Processing Locus CUFF.641_From_kn_0_3605300_ [****** ] 25% > Processing Locus CUFF.643_From_kn_0_3799876_ [****** ] 25% > Processing Locus CUFF.645_From_edi_0_2888586 [****** ] 25% > Processing Locus CUFF.647_From_kn_0_3802200_ [****** ] 26% > Processing Locus CUFF.649_From_kn_0_3617271_ [****** ] 26% > Processing Locus CUFF.651_From_ler_0_3967940 [****** ] 27% > Processing Locus CUFF.653_From_kn_0_3751597_ [****** ] 27% > Processing Locus CUFF.655_From_hi_0_2795398_ [****** ] 27% > Processing Locus CUFF.657_From_ler_0_3998132 [******* ] 28% > Processing Locus CUFF.659_From_ler_0_4153595 [******* ] 28% > Processing Locus CUFF.661_From_kn_0_3819922_ [******* ] 29% > Processing Locus CUFF.663_From_kn_0_3613403_ [******* ] 29% > Processing Locus CUFF.665_From_hi_0_2939638_ [******* ] 30% > Processing Locus CUFF.666_From_ler_0_4004770 [******* ] 30% > Processing Locus CUFF.669_From_ler_0_4225073 [******* ] 30% > Processing Locus CUFF.671_From_edi_0_2859720 [******* ] 31% > Processing Locus CUFF.673_From_ler_0_4224097 [******* ] 31% > Processing Locus CUFF.675_From_mt_0_4213448_ [******** ] 32% > Processing Locus CUFF.677_From_ct_1_3133995_ [******** ] 32% > Processing Locus CUFF.679_From_ler_0_3998410 [******** ] 33% > Processing Locus CUFF.681_From_mt_0_4399784_ [******** ] 33% > Processing Locus CUFF.683_From_ler_0_4165287 [******** ] 33% > Processing Locus CUFF.685_From_mt_0_4231054_ [******** ] 34% > Processing Locus CUFF.687_From_mt_0_4230874_ [******** ] 34% > Processing Locus CUFF.689_From_ler_0_4018856 [******** ] 35% > Processing Locus CUFF.691_From_hi_0_2961678_ [******** ] 35% > Processing Locus CUFF.693_From_no_0_2934639_ [********* ] 36% > Processing Locus CUFF.695_From_mt_0_4217716_ [********* ] 36% > Processing Locus CUFF.697_From_mt_0_4229662_ [********* ] 36% > Processing Locus CUFF.699_From_no_0_2905273_ [********* ] 37% > Processing Locus CUFF.701_From_no_0_2951521_ [********* ] 37% > Processing Locus CUFF.703_From_no_0_2885444_ [********* ] 38% > Processing Locus CUFF.705_From_no_0_3113578_ [********* ] 38% > Processing Locus CUFF.707_From_no_0_2959683_ [********* ] 38% > Processing Locus CUFF.709_From_no_0_3101262_ [********* ] 39% > Processing Locus CUFF.711_From_no_0_3088052_ [********* ] 39% > Processing Locus CUFF.713_From_no_0_3116320_ [********** ] 40% > Processing Locus CUFF.715_From_oy_0_3098144_ [********** ] 40% > Processing Locus CUFF.717_From_oy_0_2966542_ [********** ] 41% > Processing Locus CUFF.719_From_oy_0_2936927_ [********** ] 41% > Processing Locus CUFF.721_From_no_0_3120392_ [********** ] 41% > Processing Locus CUFF.723_From_po_0_3306688_ [********** ] 42% > Processing Locus CUFF.725_From_no_0_3116640_ [********** ] 42% > Processing Locus CUFF.727_From_hi_0_2953648_ [********** ] 43% > Processing Locus CUFF.729_From_oy_0_3001818_ [********** ] 43% > Processing Locus CUFF.731_From_po_0_3324652_ [*********** ] 44% > Processing Locus CUFF.733_From_no_0_2956652_ [*********** ] 44% > Processing Locus CUFF.735_From_po_0_3293868_ [*********** ] 44% > Processing Locus CUFF.737_From_ct_1_3132277_ [*********** ] 45% > Processing Locus CUFF.739_From_po_0_3340213_ [*********** ] 45% > Processing Locus CUFF.741_From_po_0_3382155_ [*********** ] 46% > Processing Locus CUFF.743_From_po_0_3330421_ [*********** ] 46% > Processing Locus CUFF.745_From_po_0_3507160_ [*********** ] 47% > Processing Locus CUFF.747_From_po_0_3299272_ [*********** ] 47% > Processing Locus CUFF.749_From_oy_0_3162092_ [*********** ] 47% > Processing Locus CUFF.751_From_rsch_4_403485 [************ ] 48% > Processing Locus CUFF.753_From_oy_0_3121110_ [************ ] 48% > Processing Locus CUFF.755_From_mt_0_4193196_ [************ ] 49% > Processing Locus CUFF.757_From_po_0_3372769_ [************ ] 49% > Processing Locus CUFF.759_From_no_0_2936769_ [************ ] 50% > Processing Locus CUFF.761_From_po_0_3606391_ [************ ] 50% > Processing Locus CUFF.763_From_rsch_4_403203 [************ ] 50% > Processing Locus CUFF.765_From_rsch_4_411079 [************ ] 51% > Processing Locus CUFF.767_From_rsch_4_411814 [************ ] 51% > Processing Locus CUFF.769_From_rsch_4_410762 [************* ] 52% > Processing Locus CUFF.771_From_po_0_3332479_ [************* ] 52% > Processing Locus CUFF.773_From_po_0_3606391_ [************* ] 52% > Processing Locus CUFF.775_From_rsch_4_409124 [************* ] 53% > Processing Locus CUFF.777_From_rsch_4_408506 [************* ] 53% > Processing Locus CUFF.779_From_rsch_4_421454 [************* ] 54% > Processing Locus CUFF.781_From_rsch_4_427756 [************* ] 54% > Processing Locus CUFF.783_From_oy_0_2965192_ [************* ] 55% > Processing Locus CUFF.785_From_no_0_3128142_ [************* ] 55% > Processing Locus CUFF.787_From_rsch_4_427756 [************* ] 55% > Processing Locus CUFF.789_From_rsch_4_427544 [************** ] 56% > Processing Locus CUFF.791_From_rsch_4_425553 [************** ] 56% > Processing Locus CUFF.793_From_sf_2_2504999_ [************** ] 57% > Processing Locus CUFF.795_From_rsch_4_429714 [************** ] 57% > Processing Locus CUFF.797_From_sf_2_2676583_ [************** ] 58% > Processing Locus CUFF.799_From_sf_2_2662232_ [************** ] 58% > Processing Locus CUFF.801_From_sf_2_2532172_ [************** ] 58% > Processing Locus CUFF.803_From_po_0_3573778_ [************** ] 59% > Processing Locus CUFF.805_From_sf_2_2486157_ [************** ] 59% > Processing Locus CUFF.807_From_sf_2_2488391_ [*************** ] 60% > Processing Locus CUFF.809_From_sf_2_2682779_ [*************** ] 60% > Processing Locus CUFF.811_From_sf_2_2459023_ [*************** ] 61% > Processing Locus CUFF.813_From_tsu_0_2970253 [*************** ] 61% > Processing Locus CUFF.815_From_sf_2_2671632_ [*************** ] 61% > Processing Locus CUFF.817_From_sf_2_2524453_ [*************** ] 62% > Processing Locus CUFF.819_From_tsu_0_3036945 [*************** ] 62% > Processing Locus CUFF.821_From_tsu_0_3175121 [*************** ] 63% > Processing Locus CUFF.823_From_tsu_0_3175121 [*************** ] 63% > Processing Locus CUFF.825_From_sf_2_2700286_ [*************** ] 63% > Processing Locus CUFF.827_From_rsch_4_427728 [**************** ] 64% > Processing Locus CUFF.829_From_tsu_0_3135135 [**************** ] 64% > Processing Locus CUFF.831_From_sf_2_2687774_ [**************** ] 65% > Processing Locus CUFF.833_From_tsu_0_3208747 [**************** ] 65% > Processing Locus CUFF.835_From_tsu_0_3211741 [**************** ] 66% > Processing Locus CUFF.837_From_tsu_0_3215671 [**************** ] 66% > Processing Locus CUFF.839_From_sf_2_2680171_ [**************** ] 66% > Processing Locus CUFF.841_From_tsu_0_3243273 [**************** ] 67% > Processing Locus CUFF.843_From_rsch_4_429219 [**************** ] 67% > Processing Locus CUFF.845_From_tsu_0_3243273 [***************** ] 68% > Processing Locus CUFF.847_From_tsu_0_3242833 [***************** ] 68% > Processing Locus CUFF.849_From_tsu_0_3222297 [***************** ] 69% > Processing Locus CUFF.851_From_wil_2_2906137 [***************** ] 69% > Processing Locus CUFF.853_From_wil_2_2920529 [***************** ] 69% > Processing Locus CUFF.855_From_wil_2_2915899 [***************** ] 70% > Processing Locus CUFF.857_From_sf_2_2653966_ [***************** ] 70% > Processing Locus CUFF.859_From_tsu_0_3215737 [***************** ] 71% > Processing Locus CUFF.861_From_mt_0_4528444_ [***************** ] 71% > Processing Locus CUFF.863_From_wil_2_3008461 [****************** ] 72% > Processing Locus CUFF.865_From_wil_2_2892485 [****************** ] 72% > Processing Locus CUFF.867_From_wil_2_2945095 [****************** ] 72% > Processing Locus CUFF.869_From_sf_2_2701328_ [****************** ] 73% > Processing Locus CUFF.871_From_rsch_4_426655 [****************** ] 73% > Processing Locus CUFF.873_From_wil_2_3050523 [****************** ] 74% > Processing Locus CUFF.875_From_wil_2_3052951 [****************** ] 74% > Processing Locus CUFF.877_From_sf_2_2687786_ [****************** ] 75% > Processing Locus CUFF.879_From_rsch_4_405516 [****************** ] 75% > Processing Locus CUFF.881_From_wil_2_2925323 [****************** ] 75% > Processing Locus CUFF.883_From_wil_2_3066229 [******************* ] 76% > Processing Locus CUFF.885_From_wil_2_3063473 [******************* ] 76% > Processing Locus CUFF.887_From_wil_2_3054893 [******************* ] 77% > Processing Locus CUFF.889_From_ws_0_3181530_ [******************* ] 77% > Processing Locus CUFF.891_From_wil_2_3079625 [******************* ] 77% > Processing Locus CUFF.893_From_ws_0_3190679_ [******************* ] 78% > Processing Locus CUFF.895_From_tsu_0_3215821 [******************* ] 78% > Processing Locus CUFF.897_From_ws_0_3298283_ [******************* ] 79% > Processing Locus CUFF.899_From_ws_0_3190963_ [******************* ] 79% > Processing Locus CUFF.901_From_wil_2_3088151 [******************** ] 80% > Processing Locus CUFF.903_From_wil_2_3089541 [******************** ] 80% > Processing Locus CUFF.905_From_ws_0_3339092_ [******************** ] 80% > Processing Locus CUFF.907_From_ws_0_3182508_ [******************** ] 81% > Processing Locus CUFF.909_From_wil_2_3052273 [******************** ] 81% > Processing Locus CUFF.911_From_wil_2_3068737 [******************** ] 82% > Processing Locus CUFF.913_From_wil_2_2834553 [******************** ] 82% > Processing Locus CUFF.915_From_ws_0_3349444_ [******************** ] 83% > Processing Locus CUFF.917_From_ws_0_3371988_ [******************** ] 83% > Processing Locus CUFF.919_From_ws_0_3347582_ [******************** ] 83% > Processing Locus CUFF.921_From_wil_2_3077447 [********************* ] 84% > Processing Locus CUFF.923_From_ws_0_3382728_ [********************* ] 84% > Processing Locus CUFF.925_From_ws_0_3371988_ [********************* ] 85% > Processing Locus CUFF.927_From_wu_0_2655481_ [********************* ] 85% > Processing Locus CUFF.929_From_ws_0_3382728_ [********************* ] 86% > Processing Locus CUFF.931_From_wu_0_2679395_ [********************* ] 86% > Processing Locus CUFF.933_From_tsu_0_3212935 [********************* ] 86% > Processing Locus CUFF.935_From_ws_0_3380934_ [********************* ] 87% > Processing Locus CUFF.937_From_ws_0_3373604_ [********************* ] 87% > Processing Locus CUFF.939_From_ws_0_3365892_ [********************** ] 88% > Processing Locus CUFF.941_From_wu_0_2824308_ [********************** ] 88% > Processing Locus CUFF.943_From_zu_0_3075813_ [********************** ] 88% > Processing Locus CUFF.945_From_wu_0_2678387_ [********************** ] 89% > Processing Locus CUFF.947_From_wu_0_2654219_ [********************** ] 89% > Processing Locus CUFF.949_From_wu_0_2687576_ [********************** ] 90% > Processing Locus CUFF.951_From_wil_2_3087183 [********************** ] 90% > Processing Locus CUFF.953_From_ws_0_3382500_ [********************** ] 91% > Processing Locus CUFF.955_From_ws_0_3340488_ [********************** ] 91% > Processing Locus CUFF.957_From_ws_0_3381390_ [********************** ] 91% > Processing Locus CUFF.959_From_ws_0_3344070_ [*********************** ] 92% > Processing Locus CUFF.961_From_wu_0_2837848_ [*********************** ] 92% > Processing Locus CUFF.963_From_zu_0_3092045_ [*********************** ] 93% > Processing Locus CUFF.965_From_zu_0_3238769_ [*********************** ] 93% > Processing Locus CUFF.967_From_zu_0_3022629_ [*********************** ] 94% > Processing Locus CUFF.969_From_zu_0_3190435_ [*********************** ] 94% > Processing Locus CUFF.971_From_zu_0_3255169_ [*********************** ] 94% > Processing Locus CUFF.973_From_zu_0_3242889_ [*********************** ] 95% > Processing Locus CUFF.975_From_zu_0_3259399_ [*********************** ] 95% > Processing Locus CUFF.977_From_zu_0_3255503_ [************************ ] 96% > Processing Locus CUFF.979_From_zu_0_3278243_ [************************ ] 96% > Processing Locus CUFF.981_From_zu_0_3289907_ [************************ ] 97% > Processing Locus CUFF.983_From_zu_0_3243571_ [************************ ] 97% > Processing Locus CUFF.985_From_zu_0_3280213_ [************************ ] 97% > Processing Locus CUFF.987_From_zu_0_3118546_ [************************ ] 98% > Processing Locus CUFF.989_From_zu_0_3289907_ [************************ ] 98% > Processing Locus CUFF.991_From_zu_0_3277661_ [************************ ] 99% > Processing Locus CUFF.993_From_zu_0_3082201_ [************************ ] 99% > Processed 236 loci. [*************************] 100% [16:52:18] Loading reference annotation and sequence [16:52:18] Learning bias parameters. > Processing Locus CUFF.523_From_bur_0_1804399 [ ] 0% > Processing Locus CUFF.525_From_bur_0_1863298 [ ] 0% > Processing Locus CUFF.527_From_bur_0_1967596 [ ] 0% > Processing Locus CUFF.529_From_bur_0_1873494 [ ] 1% > Processing Locus CUFF.531_From_bur_0_1868430 [ ] 1% > Processing Locus CUFF.533_From_bur_0_2020452 [ ] 2% > Processing Locus CUFF.535_From_bur_0_1969548 [ ] 2% > Processing Locus CUFF.537_From_bur_0_1999718 [ ] 2% > Processing Locus CUFF.539_From_bur_0_2021834 [ ] 3% > Processing Locus CUFF.541_From_can_0_3059433 [ ] 3% > Processing Locus CUFF.543_From_can_0_3017860 [* ] 4% > Processing Locus CUFF.545_From_bur_0_1856286 [* ] 4% > Processing Locus CUFF.547_From_bur_0_2032354 [* ] 5% > Processing Locus CUFF.549_From_can_0_3216099 [* ] 5% > Processing Locus CUFF.551_From_can_0_3122480 [* ] 5% > Processing Locus CUFF.553_From_can_0_3223655 [* ] 6% > Processing Locus CUFF.555_From_can_0_3217045 [* ] 6% > Processing Locus CUFF.557_From_can_0_3234869 [* ] 7% > Processing Locus CUFF.559_From_can_0_3231205 [* ] 7% > Processing Locus CUFF.561_From_can_0_3189753 [** ] 8% > Processing Locus CUFF.563_From_bur_0_2020452 [** ] 8% > Processing Locus CUFF.565_From_can_0_3257137 [** ] 8% > Processing Locus CUFF.567_From_can_0_3258779 [** ] 9% > Processing Locus CUFF.569_From_can_0_3263637 [** ] 9% > Processing Locus CUFF.571_From_can_0_3076940 [** ] 10% > Processing Locus CUFF.573_From_can_0_3233581 [** ] 10% > Processing Locus CUFF.575_From_ct_1_3082021_ [** ] 11% > Processing Locus CUFF.577_From_ct_1_3125173_ [** ] 11% > Processing Locus CUFF.579_From_ct_1_3133451_ [** ] 11% > Processing Locus CUFF.581_From_can_0_3218459 [*** ] 12% > Processing Locus CUFF.583_From_ct_1_3302721_ [*** ] 12% > Processing Locus CUFF.585_From_ct_1_3247037_ [*** ] 13% > Processing Locus CUFF.587_From_ct_1_3277323_ [*** ] 13% > Processing Locus CUFF.589_From_edi_0_2723255 [*** ] 13% > Processing Locus CUFF.591_From_can_0_3239881 [*** ] 14% > Processing Locus CUFF.593_From_can_0_3270131 [*** ] 14% > Processing Locus CUFF.595_From_ct_1_3302721_ [*** ] 15% > Processing Locus CUFF.597_From_edi_0_2759827 [*** ] 15% > Processing Locus CUFF.599_From_edi_0_2744702 [**** ] 16% > Processing Locus CUFF.601_From_edi_0_2934714 [**** ] 16% > Processing Locus CUFF.603_From_bur_0_2025286 [**** ] 16% > Processing Locus CUFF.604_From_edi_0_2934714 [**** ] 17% > Processing Locus CUFF.607_From_edi_0_2891226 [**** ] 17% > Processing Locus CUFF.609_From_hi_0_2755116_ [**** ] 18% > Processing Locus CUFF.611_From_edi_0_2921730 [**** ] 18% > Processing Locus CUFF.613_From_hi_0_2773206_ [**** ] 19% > Processing Locus CUFF.615_From_edi_0_2932438 [**** ] 19% > Processing Locus CUFF.617_From_edi_0_2918156 [**** ] 19% > Processing Locus CUFF.619_From_edi_0_2871668 [***** ] 20% > Processing Locus CUFF.621_From_edi_0_2934714 [***** ] 20% > Processing Locus CUFF.623_From_hi_0_2778596_ [***** ] 21% > Processing Locus CUFF.625_From_hi_0_2964064_ [***** ] 21% > Processing Locus CUFF.627_From_edi_0_2889434 [***** ] 22% > Processing Locus CUFF.629_From_kn_0_3594465_ [***** ] 22% > Processing Locus CUFF.635_From_ct_1_3241157_ [***** ] 22% > Processing Locus CUFF.637_From_kn_0_3626969_ [***** ] 23% > Processing Locus CUFF.639_From_hi_0_2916184_ [***** ] 23% > Processing Locus CUFF.641_From_kn_0_3605300_ [****** ] 24% > Processing Locus CUFF.643_From_kn_0_3799876_ [****** ] 24% > Processing Locus CUFF.645_From_edi_0_2888586 [****** ] 25% > Processing Locus CUFF.647_From_kn_0_3802200_ [****** ] 25% > Processing Locus CUFF.649_From_kn_0_3617271_ [****** ] 25% > Processing Locus CUFF.651_From_ler_0_3967940 [****** ] 26% > Processing Locus CUFF.653_From_kn_0_3751597_ [****** ] 26% > Processing Locus CUFF.655_From_hi_0_2795398_ [****** ] 27% > Processing Locus CUFF.657_From_ler_0_3998132 [****** ] 27% > Processing Locus CUFF.659_From_ler_0_4153595 [****** ] 27% > Processing Locus CUFF.661_From_kn_0_3819922_ [******* ] 28% > Processing Locus CUFF.663_From_kn_0_3613403_ [******* ] 28% > Processing Locus CUFF.665_From_hi_0_2939638_ [******* ] 29% > Processing Locus CUFF.666_From_ler_0_4004770 [******* ] 29% > Processing Locus CUFF.669_From_ler_0_4225073 [******* ] 30% > Processing Locus CUFF.671_From_edi_0_2859720 [******* ] 30% > Processing Locus CUFF.673_From_ler_0_4224097 [******* ] 30% > Processing Locus CUFF.675_From_mt_0_4213448_ [******* ] 31% > Processing Locus CUFF.677_From_ct_1_3133995_ [******* ] 31% > Processing Locus CUFF.679_From_ler_0_3998410 [******** ] 32% > Processing Locus CUFF.681_From_mt_0_4399784_ [******** ] 32% > Processing Locus CUFF.683_From_ler_0_4165287 [******** ] 33% > Processing Locus CUFF.685_From_mt_0_4231054_ [******** ] 33% > Processing Locus CUFF.687_From_mt_0_4230874_ [******** ] 33% > Processing Locus CUFF.689_From_ler_0_4018856 [******** ] 34% > Processing Locus CUFF.691_From_hi_0_2961678_ [******** ] 34% > Processing Locus CUFF.693_From_no_0_2934639_ [******** ] 35% > Processing Locus CUFF.695_From_mt_0_4217716_ [******** ] 35% > Processing Locus CUFF.697_From_mt_0_4229662_ [********* ] 36% > Processing Locus CUFF.699_From_no_0_2905273_ [********* ] 36% > Processing Locus CUFF.701_From_no_0_2951521_ [********* ] 36% > Processing Locus CUFF.703_From_no_0_2885444_ [********* ] 37% > Processing Locus CUFF.705_From_no_0_3113578_ [********* ] 37% > Processing Locus CUFF.707_From_no_0_2959683_ [********* ] 38% > Processing Locus CUFF.709_From_no_0_3101262_ [********* ] 38% > Processing Locus CUFF.711_From_no_0_3088052_ [********* ] 38% > Processing Locus CUFF.713_From_no_0_3116320_ [********* ] 39% > Processing Locus CUFF.715_From_oy_0_3098144_ [********* ] 39% > Processing Locus CUFF.717_From_oy_0_2966542_ [********** ] 40% > Processing Locus CUFF.719_From_oy_0_2936927_ [********** ] 40% > Processing Locus CUFF.721_From_no_0_3120392_ [********** ] 41% > Processing Locus CUFF.723_From_po_0_3306688_ [********** ] 41% > Processing Locus CUFF.725_From_no_0_3116640_ [********** ] 41% > Processing Locus CUFF.727_From_hi_0_2953648_ [********** ] 42% > Processing Locus CUFF.729_From_oy_0_3001818_ [********** ] 42% > Processing Locus CUFF.731_From_po_0_3324652_ [********** ] 43% > Processing Locus CUFF.733_From_no_0_2956652_ [********** ] 43% > Processing Locus CUFF.735_From_po_0_3293868_ [*********** ] 44% > Processing Locus CUFF.737_From_ct_1_3132277_ [*********** ] 44% > Processing Locus CUFF.739_From_po_0_3340213_ [*********** ] 44% > Processing Locus CUFF.741_From_po_0_3382155_ [*********** ] 45% > Processing Locus CUFF.743_From_po_0_3330421_ [*********** ] 45% > Processing Locus CUFF.745_From_po_0_3507160_ [*********** ] 46% > Processing Locus CUFF.747_From_po_0_3299272_ [*********** ] 46% > Processing Locus CUFF.749_From_oy_0_3162092_ [*********** ] 47% > Processing Locus CUFF.751_From_rsch_4_403485 [*********** ] 47% > Processing Locus CUFF.753_From_oy_0_3121110_ [*********** ] 47% > Processing Locus CUFF.755_From_mt_0_4193196_ [************ ] 48% > Processing Locus CUFF.757_From_po_0_3372769_ [************ ] 48% > Processing Locus CUFF.759_From_no_0_2936769_ [************ ] 49% > Processing Locus CUFF.761_From_po_0_3606391_ [************ ] 49% > Processing Locus CUFF.763_From_rsch_4_403203 [************ ] 50% > Processing Locus CUFF.765_From_rsch_4_411079 [************ ] 50% > Processing Locus CUFF.767_From_rsch_4_411814 [************ ] 50% > Processing Locus CUFF.769_From_rsch_4_410762 [************ ] 51% > Processing Locus CUFF.771_From_po_0_3332479_ [************ ] 51% > Processing Locus CUFF.773_From_po_0_3606391_ [************* ] 52% > Processing Locus CUFF.775_From_rsch_4_409124 [************* ] 52% > Processing Locus CUFF.777_From_rsch_4_408506 [************* ] 52% > Processing Locus CUFF.779_From_rsch_4_421454 [************* ] 53% > Processing Locus CUFF.781_From_rsch_4_427756 [************* ] 53% > Processing Locus CUFF.783_From_oy_0_2965192_ [************* ] 54% > Processing Locus CUFF.785_From_no_0_3128142_ [************* ] 54% > Processing Locus CUFF.787_From_rsch_4_427756 [************* ] 55% > Processing Locus CUFF.789_From_rsch_4_427544 [************* ] 55% > Processing Locus CUFF.791_From_rsch_4_425553 [************* ] 55% > Processing Locus CUFF.793_From_sf_2_2504999_ [************** ] 56% > Processing Locus CUFF.795_From_rsch_4_429714 [************** ] 56% > Processing Locus CUFF.797_From_sf_2_2676583_ [************** ] 57% > Processing Locus CUFF.799_From_sf_2_2662232_ [************** ] 57% > Processing Locus CUFF.801_From_sf_2_2532172_ [************** ] 58% > Processing Locus CUFF.803_From_po_0_3573778_ [************** ] 58% > Processing Locus CUFF.805_From_sf_2_2486157_ [************** ] 58% > Processing Locus CUFF.807_From_sf_2_2488391_ [************** ] 59% > Processing Locus CUFF.809_From_sf_2_2682779_ [************** ] 59% > Processing Locus CUFF.811_From_sf_2_2459023_ [*************** ] 60% > Processing Locus CUFF.813_From_tsu_0_2970253 [*************** ] 60% > Processing Locus CUFF.815_From_sf_2_2671632_ [*************** ] 61% > Processing Locus CUFF.817_From_sf_2_2524453_ [*************** ] 61% > Processing Locus CUFF.819_From_tsu_0_3036945 [*************** ] 61% > Processing Locus CUFF.821_From_tsu_0_3175121 [*************** ] 62% > Processing Locus CUFF.823_From_tsu_0_3175121 [*************** ] 62% > Processing Locus CUFF.825_From_sf_2_2700286_ [*************** ] 63% > Processing Locus CUFF.827_From_rsch_4_427728 [*************** ] 63% > Processing Locus CUFF.829_From_tsu_0_3135135 [*************** ] 63% > Processing Locus CUFF.831_From_sf_2_2687774_ [**************** ] 64% > Processing Locus CUFF.833_From_tsu_0_3208747 [**************** ] 64% > Processing Locus CUFF.835_From_tsu_0_3211741 [**************** ] 65% > Processing Locus CUFF.837_From_tsu_0_3215671 [**************** ] 65% > Processing Locus CUFF.839_From_sf_2_2680171_ [**************** ] 66% > Processing Locus CUFF.841_From_tsu_0_3243273 [**************** ] 66% > Processing Locus CUFF.843_From_rsch_4_429219 [**************** ] 66% > Processing Locus CUFF.845_From_tsu_0_3243273 [**************** ] 67% > Processing Locus CUFF.847_From_tsu_0_3242833 [**************** ] 67% > Processing Locus CUFF.849_From_tsu_0_3222297 [***************** ] 68% > Processing Locus CUFF.851_From_wil_2_2906137 [***************** ] 68% > Processing Locus CUFF.853_From_wil_2_2920529 [***************** ] 69% > Processing Locus CUFF.855_From_wil_2_2915899 [***************** ] 69% > Processing Locus CUFF.857_From_sf_2_2653966_ [***************** ] 69% > Processing Locus CUFF.859_From_tsu_0_3215737 [***************** ] 70% > Processing Locus CUFF.861_From_mt_0_4528444_ [***************** ] 70% > Processing Locus CUFF.863_From_wil_2_3008461 [***************** ] 71% > Processing Locus CUFF.865_From_wil_2_2892485 [***************** ] 71% > Processing Locus CUFF.867_From_wil_2_2945095 [****************** ] 72% > Processing Locus CUFF.869_From_sf_2_2701328_ [****************** ] 72% > Processing Locus CUFF.871_From_rsch_4_426655 [****************** ] 72% > Processing Locus CUFF.873_From_wil_2_3050523 [****************** ] 73% > Processing Locus CUFF.875_From_wil_2_3052951 [****************** ] 73% > Processing Locus CUFF.877_From_sf_2_2687786_ [****************** ] 74% > Processing Locus CUFF.879_From_rsch_4_405516 [****************** ] 74% > Processing Locus CUFF.881_From_wil_2_2925323 [****************** ] 75% > Processing Locus CUFF.883_From_wil_2_3066229 [****************** ] 75% > Processing Locus CUFF.885_From_wil_2_3063473 [****************** ] 75% > Processing Locus CUFF.887_From_wil_2_3054893 [******************* ] 76% > Processing Locus CUFF.889_From_ws_0_3181530_ [******************* ] 76% > Processing Locus CUFF.891_From_wil_2_3079625 [******************* ] 77% > Processing Locus CUFF.893_From_ws_0_3190679_ [******************* ] 77% > Processing Locus CUFF.895_From_tsu_0_3215821 [******************* ] 77% > Processing Locus CUFF.897_From_ws_0_3298283_ [******************* ] 78% > Processing Locus CUFF.899_From_ws_0_3190963_ [******************* ] 78% > Processing Locus CUFF.901_From_wil_2_3088151 [******************* ] 79% > Processing Locus CUFF.903_From_wil_2_3089541 [******************* ] 79% > Processing Locus CUFF.905_From_ws_0_3339092_ [******************** ] 80% > Processing Locus CUFF.907_From_ws_0_3182508_ [******************** ] 80% > Processing Locus CUFF.909_From_wil_2_3052273 [******************** ] 80% > Processing Locus CUFF.911_From_wil_2_3068737 [******************** ] 81% > Processing Locus CUFF.913_From_wil_2_2834553 [******************** ] 81% > Processing Locus CUFF.915_From_ws_0_3349444_ [******************** ] 82% > Processing Locus CUFF.917_From_ws_0_3371988_ [******************** ] 82% > Processing Locus CUFF.919_From_ws_0_3347582_ [******************** ] 83% > Processing Locus CUFF.921_From_wil_2_3077447 [******************** ] 83% > Processing Locus CUFF.923_From_ws_0_3382728_ [******************** ] 83% > Processing Locus CUFF.925_From_ws_0_3371988_ [********************* ] 84% > Processing Locus CUFF.927_From_wu_0_2655481_ [********************* ] 84% > Processing Locus CUFF.929_From_ws_0_3382728_ [********************* ] 85% > Processing Locus CUFF.931_From_wu_0_2679395_ [********************* ] 85% > Processing Locus CUFF.933_From_tsu_0_3212935 [********************* ] 86% > Processing Locus CUFF.935_From_ws_0_3380934_ [********************* ] 86% > Processing Locus CUFF.937_From_ws_0_3373604_ [********************* ] 86% > Processing Locus CUFF.939_From_ws_0_3365892_ [********************* ] 87% > Processing Locus CUFF.941_From_wu_0_2824308_ [********************* ] 87% > Processing Locus CUFF.943_From_zu_0_3075813_ [********************** ] 88% > Processing Locus CUFF.945_From_wu_0_2678387_ [********************** ] 88% > Processing Locus CUFF.947_From_wu_0_2654219_ [********************** ] 88% > Processing Locus CUFF.949_From_wu_0_2687576_ [********************** ] 89% > Processing Locus CUFF.951_From_wil_2_3087183 [********************** ] 89% > Processing Locus CUFF.953_From_ws_0_3382500_ [********************** ] 90% > Processing Locus CUFF.955_From_ws_0_3340488_ [********************** ] 90% > Processing Locus CUFF.957_From_ws_0_3381390_ [********************** ] 91% > Processing Locus CUFF.959_From_ws_0_3344070_ [********************** ] 91% > Processing Locus CUFF.961_From_wu_0_2837848_ [********************** ] 91% > Processing Locus CUFF.963_From_zu_0_3092045_ [*********************** ] 92% > Processing Locus CUFF.965_From_zu_0_3238769_ [*********************** ] 92% > Processing Locus CUFF.967_From_zu_0_3022629_ [*********************** ] 93% > Processing Locus CUFF.969_From_zu_0_3190435_ [*********************** ] 93% > Processing Locus CUFF.971_From_zu_0_3255169_ [*********************** ] 94% > Processing Locus CUFF.973_From_zu_0_3242889_ [*********************** ] 94% > Processing Locus CUFF.975_From_zu_0_3259399_ [*********************** ] 94% > Processing Locus CUFF.977_From_zu_0_3255503_ [*********************** ] 95% > Processing Locus CUFF.979_From_zu_0_3278243_ [*********************** ] 95% > Processing Locus CUFF.981_From_zu_0_3289907_ [************************ ] 96% > Processing Locus CUFF.983_From_zu_0_3243571_ [************************ ] 96% > Processing Locus CUFF.985_From_zu_0_3280213_ [************************ ] 97% > Processing Locus CUFF.987_From_zu_0_3118546_ [************************ ] 97% > Processing Locus CUFF.989_From_zu_0_3289907_ [************************ ] 97% > Processing Locus CUFF.991_From_zu_0_3277661_ [************************ ] 98% > Processing Locus CUFF.993_From_zu_0_3082201_ [************************ ] 98% > Processed 234 loci. [*************************] 100% [16:52:19] Assembling transcripts and estimating abundances. > Processing Locus CUFF.523_From_bur_0_1804399 [ ] 0% > Processing Locus CUFF.525_From_bur_0_1863298 [ ] 0% > Processing Locus CUFF.527_From_bur_0_1967596 [ ] 0% > Processing Locus CUFF.529_From_bur_0_1873494 [ ] 1% > Processing Locus CUFF.531_From_bur_0_1868430 [ ] 1% > Processing Locus CUFF.533_From_bur_0_2020452 [ ] 2% > Processing Locus CUFF.535_From_bur_0_1969548 [ ] 2% > Processing Locus CUFF.537_From_bur_0_1999718 [ ] 2% > Processing Locus CUFF.539_From_bur_0_2021834 [ ] 3% > Processing Locus CUFF.541_From_can_0_3059433 [ ] 3% > Processing Locus CUFF.543_From_can_0_3017860 [* ] 4% > Processing Locus CUFF.545_From_bur_0_1856286 [* ] 4% > Processing Locus CUFF.547_From_bur_0_2032354 [* ] 5% > Processing Locus CUFF.549_From_can_0_3216099 [* ] 5% > Processing Locus CUFF.551_From_can_0_3122480 [* ] 5% > Processing Locus CUFF.553_From_can_0_3223655 [* ] 6% > Processing Locus CUFF.555_From_can_0_3217045 [* ] 6% > Processing Locus CUFF.557_From_can_0_3234869 [* ] 7% > Processing Locus CUFF.559_From_can_0_3231205 [* ] 7% > Processing Locus CUFF.561_From_can_0_3189753 [** ] 8% > Processing Locus CUFF.563_From_bur_0_2020452 [** ] 8% > Processing Locus CUFF.565_From_can_0_3257137 [** ] 8% > Processing Locus CUFF.567_From_can_0_3258779 [** ] 9% > Processing Locus CUFF.569_From_can_0_3263637 [** ] 9% > Processing Locus CUFF.571_From_can_0_3076940 [** ] 10% > Processing Locus CUFF.573_From_can_0_3233581 [** ] 10% > Processing Locus CUFF.575_From_ct_1_3082021_ [** ] 11% > Processing Locus CUFF.577_From_ct_1_3125173_ [** ] 11% > Processing Locus CUFF.579_From_ct_1_3133451_ [** ] 11% > Processing Locus CUFF.581_From_can_0_3218459 [*** ] 12% > Processing Locus CUFF.583_From_ct_1_3302721_ [*** ] 12% > Processing Locus CUFF.585_From_ct_1_3247037_ [*** ] 13% > Processing Locus CUFF.587_From_ct_1_3277323_ [*** ] 13% > Processing Locus CUFF.589_From_edi_0_2723255 [*** ] 13% > Processing Locus CUFF.591_From_can_0_3239881 [*** ] 14% > Processing Locus CUFF.593_From_can_0_3270131 [*** ] 14% > Processing Locus CUFF.595_From_ct_1_3302721_ [*** ] 15% > Processing Locus CUFF.597_From_edi_0_2759827 [*** ] 15% > Processing Locus CUFF.599_From_edi_0_2744702 [**** ] 16% > Processing Locus CUFF.601_From_edi_0_2934714 [**** ] 16% > Processing Locus CUFF.603_From_bur_0_2025286 [**** ] 16% > Processing Locus CUFF.604_From_edi_0_2934714 [**** ] 17% > Processing Locus CUFF.607_From_edi_0_2891226 [**** ] 17% > Processing Locus CUFF.609_From_hi_0_2755116_ [**** ] 18% > Processing Locus CUFF.611_From_edi_0_2921730 [**** ] 18% > Processing Locus CUFF.613_From_hi_0_2773206_ [**** ] 19% > Processing Locus CUFF.615_From_edi_0_2932438 [**** ] 19% > Processing Locus CUFF.617_From_edi_0_2918156 [**** ] 19% > Processing Locus CUFF.619_From_edi_0_2871668 [***** ] 20% > Processing Locus CUFF.621_From_edi_0_2934714 [***** ] 20% > Processing Locus CUFF.623_From_hi_0_2778596_ [***** ] 21% > Processing Locus CUFF.625_From_hi_0_2964064_ [***** ] 21% > Processing Locus CUFF.627_From_edi_0_2889434 [***** ] 22% > Processing Locus CUFF.629_From_kn_0_3594465_ [***** ] 22% > Processing Locus CUFF.635_From_ct_1_3241157_ [***** ] 22% > Processing Locus CUFF.637_From_kn_0_3626969_ [***** ] 23% > Processing Locus CUFF.639_From_hi_0_2916184_ [***** ] 23% > Processing Locus CUFF.641_From_kn_0_3605300_ [****** ] 24% > Processing Locus CUFF.643_From_kn_0_3799876_ [****** ] 24% > Processing Locus CUFF.645_From_edi_0_2888586 [****** ] 25% > Processing Locus CUFF.647_From_kn_0_3802200_ [****** ] 25% > Processing Locus CUFF.649_From_kn_0_3617271_ [****** ] 25% > Processing Locus CUFF.651_From_ler_0_3967940 [****** ] 26% > Processing Locus CUFF.653_From_kn_0_3751597_ [****** ] 26% > Processing Locus CUFF.655_From_hi_0_2795398_ [****** ] 27% > Processing Locus CUFF.657_From_ler_0_3998132 [****** ] 27% > Processing Locus CUFF.659_From_ler_0_4153595 [****** ] 27% > Processing Locus CUFF.661_From_kn_0_3819922_ [******* ] 28% > Processing Locus CUFF.663_From_kn_0_3613403_ [******* ] 28% > Processing Locus CUFF.665_From_hi_0_2939638_ [******* ] 29% > Processing Locus CUFF.666_From_ler_0_4004770 [******* ] 29% > Processing Locus CUFF.669_From_ler_0_4225073 [******* ] 30% > Processing Locus CUFF.671_From_edi_0_2859720 [******* ] 30% > Processing Locus CUFF.673_From_ler_0_4224097 [******* ] 30% > Processing Locus CUFF.675_From_mt_0_4213448_ [******* ] 31% > Processing Locus CUFF.677_From_ct_1_3133995_ [******* ] 31% > Processing Locus CUFF.679_From_ler_0_3998410 [******** ] 32% > Processing Locus CUFF.681_From_mt_0_4399784_ [******** ] 32% > Processing Locus CUFF.683_From_ler_0_4165287 [******** ] 33% > Processing Locus CUFF.685_From_mt_0_4231054_ [******** ] 33% > Processing Locus CUFF.687_From_mt_0_4230874_ [******** ] 33% > Processing Locus CUFF.689_From_ler_0_4018856 [******** ] 34% > Processing Locus CUFF.691_From_hi_0_2961678_ [******** ] 34% > Processing Locus CUFF.693_From_no_0_2934639_ [******** ] 35% > Processing Locus CUFF.695_From_mt_0_4217716_ [******** ] 35% > Processing Locus CUFF.697_From_mt_0_4229662_ [********* ] 36% > Processing Locus CUFF.699_From_no_0_2905273_ [********* ] 36% > Processing Locus CUFF.701_From_no_0_2951521_ [********* ] 36% > Processing Locus CUFF.703_From_no_0_2885444_ [********* ] 37% > Processing Locus CUFF.705_From_no_0_3113578_ [********* ] 37% > Processing Locus CUFF.707_From_no_0_2959683_ [********* ] 38% > Processing Locus CUFF.709_From_no_0_3101262_ [********* ] 38% > Processing Locus CUFF.711_From_no_0_3088052_ [********* ] 38% > Processing Locus CUFF.713_From_no_0_3116320_ [********* ] 39% > Processing Locus CUFF.715_From_oy_0_3098144_ [********* ] 39% > Processing Locus CUFF.717_From_oy_0_2966542_ [********** ] 40% > Processing Locus CUFF.719_From_oy_0_2936927_ [********** ] 40% > Processing Locus CUFF.721_From_no_0_3120392_ [********** ] 41% > Processing Locus CUFF.723_From_po_0_3306688_ [********** ] 41% > Processing Locus CUFF.725_From_no_0_3116640_ [********** ] 41% > Processing Locus CUFF.727_From_hi_0_2953648_ [********** ] 42% > Processing Locus CUFF.729_From_oy_0_3001818_ [********** ] 42% > Processing Locus CUFF.731_From_po_0_3324652_ [********** ] 43% > Processing Locus CUFF.733_From_no_0_2956652_ [********** ] 43% > Processing Locus CUFF.735_From_po_0_3293868_ [*********** ] 44% > Processing Locus CUFF.737_From_ct_1_3132277_ [*********** ] 44% > Processing Locus CUFF.739_From_po_0_3340213_ [*********** ] 44% > Processing Locus CUFF.741_From_po_0_3382155_ [*********** ] 45% > Processing Locus CUFF.743_From_po_0_3330421_ [*********** ] 45% > Processing Locus CUFF.745_From_po_0_3507160_ [*********** ] 46% > Processing Locus CUFF.747_From_po_0_3299272_ [*********** ] 46% > Processing Locus CUFF.749_From_oy_0_3162092_ [*********** ] 47% > Processing Locus CUFF.751_From_rsch_4_403485 [*********** ] 47% > Processing Locus CUFF.753_From_oy_0_3121110_ [*********** ] 47% > Processing Locus CUFF.755_From_mt_0_4193196_ [************ ] 48% > Processing Locus CUFF.757_From_po_0_3372769_ [************ ] 48% > Processing Locus CUFF.759_From_no_0_2936769_ [************ ] 49% > Processing Locus CUFF.761_From_po_0_3606391_ [************ ] 49% > Processing Locus CUFF.763_From_rsch_4_403203 [************ ] 50% > Processing Locus CUFF.765_From_rsch_4_411079 [************ ] 50% > Processing Locus CUFF.767_From_rsch_4_411814 [************ ] 50% > Processing Locus CUFF.769_From_rsch_4_410762 [************ ] 51% > Processing Locus CUFF.771_From_po_0_3332479_ [************ ] 51% > Processing Locus CUFF.773_From_po_0_3606391_ [************* ] 52% > Processing Locus CUFF.775_From_rsch_4_409124 [************* ] 52% > Processing Locus CUFF.777_From_rsch_4_408506 [************* ] 52% > Processing Locus CUFF.779_From_rsch_4_421454 [************* ] 53% > Processing Locus CUFF.781_From_rsch_4_427756 [************* ] 53% > Processing Locus CUFF.783_From_oy_0_2965192_ [************* ] 54% > Processing Locus CUFF.785_From_no_0_3128142_ [************* ] 54% > Processing Locus CUFF.787_From_rsch_4_427756 [************* ] 55% > Processing Locus CUFF.789_From_rsch_4_427544 [************* ] 55% > Processing Locus CUFF.791_From_rsch_4_425553 [************* ] 55% > Processing Locus CUFF.793_From_sf_2_2504999_ [************** ] 56% > Processing Locus CUFF.795_From_rsch_4_429714 [************** ] 56% > Processing Locus CUFF.797_From_sf_2_2676583_ [************** ] 57% > Processing Locus CUFF.799_From_sf_2_2662232_ [************** ] 57% > Processing Locus CUFF.801_From_sf_2_2532172_ [************** ] 58% > Processing Locus CUFF.803_From_po_0_3573778_ [************** ] 58% > Processing Locus CUFF.805_From_sf_2_2486157_ [************** ] 58% > Processing Locus CUFF.807_From_sf_2_2488391_ [************** ] 59% > Processing Locus CUFF.809_From_sf_2_2682779_ [************** ] 59% > Processing Locus CUFF.811_From_sf_2_2459023_ [*************** ] 60% > Processing Locus CUFF.813_From_tsu_0_2970253 [*************** ] 60% > Processing Locus CUFF.815_From_sf_2_2671632_ [*************** ] 61% > Processing Locus CUFF.817_From_sf_2_2524453_ [*************** ] 61% > Processing Locus CUFF.819_From_tsu_0_3036945 [*************** ] 61% > Processing Locus CUFF.821_From_tsu_0_3175121 [*************** ] 62% > Processing Locus CUFF.823_From_tsu_0_3175121 [*************** ] 62% > Processing Locus CUFF.825_From_sf_2_2700286_ [*************** ] 63% > Processing Locus CUFF.827_From_rsch_4_427728 [*************** ] 63% > Processing Locus CUFF.829_From_tsu_0_3135135 [*************** ] 63% > Processing Locus CUFF.831_From_sf_2_2687774_ [**************** ] 64% > Processing Locus CUFF.833_From_tsu_0_3208747 [**************** ] 64% > Processing Locus CUFF.835_From_tsu_0_3211741 [**************** ] 65% > Processing Locus CUFF.837_From_tsu_0_3215671 [**************** ] 65% > Processing Locus CUFF.839_From_sf_2_2680171_ [**************** ] 66% > Processing Locus CUFF.841_From_tsu_0_3243273 [**************** ] 66% > Processing Locus CUFF.843_From_rsch_4_429219 [**************** ] 66% > Processing Locus CUFF.845_From_tsu_0_3243273 [**************** ] 67% > Processing Locus CUFF.847_From_tsu_0_3242833 [**************** ] 67% > Processing Locus CUFF.849_From_tsu_0_3222297 [***************** ] 68% > Processing Locus CUFF.851_From_wil_2_2906137 [***************** ] 68% > Processing Locus CUFF.853_From_wil_2_2920529 [***************** ] 69% > Processing Locus CUFF.855_From_wil_2_2915899 [***************** ] 69% > Processing Locus CUFF.857_From_sf_2_2653966_ [***************** ] 69% > Processing Locus CUFF.859_From_tsu_0_3215737 [***************** ] 70% > Processing Locus CUFF.861_From_mt_0_4528444_ [***************** ] 70% > Processing Locus CUFF.863_From_wil_2_3008461 [***************** ] 71% > Processing Locus CUFF.865_From_wil_2_2892485 [***************** ] 71% > Processing Locus CUFF.867_From_wil_2_2945095 [****************** ] 72% > Processing Locus CUFF.869_From_sf_2_2701328_ [****************** ] 72% > Processing Locus CUFF.871_From_rsch_4_426655 [****************** ] 72% > Processing Locus CUFF.873_From_wil_2_3050523 [****************** ] 73% > Processing Locus CUFF.875_From_wil_2_3052951 [****************** ] 73% > Processing Locus CUFF.877_From_sf_2_2687786_ [****************** ] 74% > Processing Locus CUFF.879_From_rsch_4_405516 [****************** ] 74% > Processing Locus CUFF.881_From_wil_2_2925323 [****************** ] 75% > Processing Locus CUFF.883_From_wil_2_3066229 [****************** ] 75% > Processing Locus CUFF.885_From_wil_2_3063473 [****************** ] 75% > Processing Locus CUFF.887_From_wil_2_3054893 [******************* ] 76% > Processing Locus CUFF.889_From_ws_0_3181530_ [******************* ] 76% > Processing Locus CUFF.891_From_wil_2_3079625 [******************* ] 77% > Processing Locus CUFF.893_From_ws_0_3190679_ [******************* ] 77% > Processing Locus CUFF.895_From_tsu_0_3215821 [******************* ] 77% > Processing Locus CUFF.897_From_ws_0_3298283_ [******************* ] 78% > Processing Locus CUFF.899_From_ws_0_3190963_ [******************* ] 78% > Processing Locus CUFF.901_From_wil_2_3088151 [******************* ] 79% > Processing Locus CUFF.903_From_wil_2_3089541 [******************* ] 79% > Processing Locus CUFF.905_From_ws_0_3339092_ [******************** ] 80% > Processing Locus CUFF.907_From_ws_0_3182508_ [******************** ] 80% > Processing Locus CUFF.909_From_wil_2_3052273 [******************** ] 80% > Processing Locus CUFF.911_From_wil_2_3068737 [******************** ] 81% > Processing Locus CUFF.913_From_wil_2_2834553 [******************** ] 81% > Processing Locus CUFF.915_From_ws_0_3349444_ [******************** ] 82% > Processing Locus CUFF.917_From_ws_0_3371988_ [******************** ] 82% > Processing Locus CUFF.919_From_ws_0_3347582_ [******************** ] 83% > Processing Locus CUFF.921_From_wil_2_3077447 [******************** ] 83% > Processing Locus CUFF.923_From_ws_0_3382728_ [******************** ] 83% > Processing Locus CUFF.925_From_ws_0_3371988_ [********************* ] 84% > Processing Locus CUFF.927_From_wu_0_2655481_ [********************* ] 84% > Processing Locus CUFF.929_From_ws_0_3382728_ [********************* ] 85% > Processing Locus CUFF.931_From_wu_0_2679395_ [********************* ] 85% > Processing Locus CUFF.933_From_tsu_0_3212935 [********************* ] 86% > Processing Locus CUFF.935_From_ws_0_3380934_ [********************* ] 86% > Processing Locus CUFF.937_From_ws_0_3373604_ [********************* ] 86% > Processing Locus CUFF.939_From_ws_0_3365892_ [********************* ] 87% > Processing Locus CUFF.941_From_wu_0_2824308_ [********************* ] 87% > Processing Locus CUFF.943_From_zu_0_3075813_ [********************** ] 88% > Processing Locus CUFF.945_From_wu_0_2678387_ [********************** ] 88% > Processing Locus CUFF.947_From_wu_0_2654219_ [********************** ] 88% > Processing Locus CUFF.949_From_wu_0_2687576_ [********************** ] 89% > Processing Locus CUFF.951_From_wil_2_3087183 [********************** ] 89% > Processing Locus CUFF.953_From_ws_0_3382500_ [********************** ] 90% > Processing Locus CUFF.955_From_ws_0_3340488_ [********************** ] 90% > Processing Locus CUFF.957_From_ws_0_3381390_ [********************** ] 91% > Processing Locus CUFF.959_From_ws_0_3344070_ [********************** ] 91% > Processing Locus CUFF.961_From_wu_0_2837848_ [********************** ] 91% > Processing Locus CUFF.963_From_zu_0_3092045_ [*********************** ] 92% > Processing Locus CUFF.965_From_zu_0_3238769_ [*********************** ] 92% > Processing Locus CUFF.967_From_zu_0_3022629_ [*********************** ] 93% > Processing Locus CUFF.969_From_zu_0_3190435_ [*********************** ] 93% > Processing Locus CUFF.971_From_zu_0_3255169_ [*********************** ] 94% > Processing Locus CUFF.973_From_zu_0_3242889_ [*********************** ] 94% > Processing Locus CUFF.975_From_zu_0_3259399_ [*********************** ] 94% > Processing Locus CUFF.977_From_zu_0_3255503_ [*********************** ] 95% > Processing Locus CUFF.979_From_zu_0_3278243_ [*********************** ] 95% > Processing Locus CUFF.981_From_zu_0_3289907_ [************************ ] 96% > Processing Locus CUFF.983_From_zu_0_3243571_ [************************ ] 96% > Processing Locus CUFF.985_From_zu_0_3280213_ [************************ ] 97% > Processing Locus CUFF.987_From_zu_0_3118546_ [************************ ] 97% > Processing Locus CUFF.989_From_zu_0_3289907_ [************************ ] 97% > Processing Locus CUFF.991_From_zu_0_3277661_ [************************ ] 98% > Processing Locus CUFF.993_From_zu_0_3082201_ [************************ ] 98% > Processed 234 loci. [*************************] 100%