tophat_reports v1.1.4 (1709)
---------------------------------------
[samopen] SAM header is present: 250 sequences.
SQ: bur_0_1804399_0 - 113
SQ: bur_0_1856286_0 - 162
SQ: bur_0_1863298_0 - 172
SQ: bur_0_1868430_0 - 180
SQ: bur_0_1873494_0 - 189
SQ: bur_0_1967596_0 - 441
SQ: bur_0_1969548_0 - 683
SQ: bur_0_1999718_0 - 902
SQ: bur_0_2020452_0 - 2363
SQ: bur_0_2021834_0 - 920
SQ: bur_0_2025286_0 - 2846
SQ: bur_0_2032354_0 - 2050
SQ: can_0_3017860_0 - 111
SQ: can_0_3059433_0 - 144
SQ: can_0_3076940_0 - 165
SQ: can_0_3093852_0 - 192
SQ: can_0_3122480_0 - 182
SQ: can_0_3189753_0 - 205
SQ: can_0_3216099_0 - 828
SQ: can_0_3217045_0 - 808
SQ: can_0_3218459_0 - 900
SQ: can_0_3223655_0 - 702
SQ: can_0_3231205_0 - 890
SQ: can_0_3233581_0 - 464
SQ: can_0_3234869_1 - 886
SQ: can_0_3239881_0 - 1070
SQ: can_0_3257137_1 - 306
SQ: can_0_3258779_0 - 824
SQ: can_0_3263637_0 - 880
SQ: can_0_3270131_0 - 2554
SQ: ct_1_3082021_0 - 129
SQ: ct_1_3125173_0 - 180
SQ: ct_1_3132277_0 - 192
SQ: ct_1_3133451_0 - 194
SQ: ct_1_3133995_0 - 195
SQ: ct_1_3241157_0 - 779
SQ: ct_1_3247037_0 - 618
SQ: ct_1_3277323_0 - 1810
SQ: ct_1_3302721_0 - 1731
SQ: edi_0_2723255_0 - 140
SQ: edi_0_2744702_0 - 159
SQ: edi_0_2759827_0 - 178
SQ: edi_0_2859720_0 - 525
SQ: edi_0_2871668_0 - 534
SQ: edi_0_2888586_0 - 1053
SQ: edi_0_2889434_0 - 920
SQ: edi_0_2891226_0 - 1154
SQ: edi_0_2918156_0 - 583
SQ: edi_0_2921730_0 - 1189
SQ: edi_0_2932438_0 - 4576
SQ: edi_0_2934714_0 - 6060
SQ: hi_0_2755116_0 - 143
SQ: hi_0_2773206_0 - 161
SQ: hi_0_2777780_0 - 167
SQ: hi_0_2778596_0 - 168
SQ: hi_0_2795398_0 - 191
SQ: hi_0_2916184_0 - 540
SQ: hi_0_2939638_0 - 643
SQ: hi_0_2953648_0 - 1323
SQ: hi_0_2959094_0 - 919
SQ: hi_0_2961678_0 - 1510
SQ: hi_0_2964064_0 - 1201
SQ: kn_0_3560653_0 - 137
SQ: kn_0_3594465_0 - 159
SQ: kn_0_3605300_0 - 168
SQ: kn_0_3612097_0 - 174
SQ: kn_0_3613403_0 - 176
SQ: kn_0_3617271_0 - 180
SQ: kn_0_3626969_0 - 191
SQ: kn_0_3632633_0 - 198
SQ: kn_0_3751597_0 - 556
SQ: kn_0_3799876_0 - 1517
SQ: kn_0_3802200_0 - 1123
SQ: kn_0_3819922_1 - 2144
SQ: ler_0_3967940_0 - 136
SQ: ler_0_3985172_0 - 150
SQ: ler_0_3998132_0 - 163
SQ: ler_0_3998410_0 - 164
SQ: ler_0_4004770_0 - 171
SQ: ler_0_4018856_0 - 190
SQ: ler_0_4153595_0 - 680
SQ: ler_0_4165287_0 - 740
SQ: ler_0_4224097_0 - 1753
SQ: ler_0_4225073_0 - 711
SQ: mt_0_4193196_0 - 166
SQ: mt_0_4213448_0 - 182
SQ: mt_0_4217716_0 - 186
SQ: mt_0_4229662_0 - 197
SQ: mt_0_4230874_0 - 198
SQ: mt_0_4231054_0 - 198
SQ: mt_0_4399784_0 - 226
SQ: mt_0_4528444_1 - 1248
SQ: no_0_2885444_0 - 113
SQ: no_0_2905273_0 - 125
SQ: no_0_2922746_0 - 139
SQ: no_0_2934639_0 - 150
SQ: no_0_2936769_0 - 152
SQ: no_0_2951521_0 - 170
SQ: no_0_2956652_0 - 178
SQ: no_0_2959683_0 - 182
SQ: no_0_3088052_0 - 1016
SQ: no_0_3101262_0 - 768
SQ: no_0_3113578_1 - 874
SQ: no_0_3116320_0 - 2197
SQ: no_0_3116640_0 - 1890
SQ: no_0_3120392_0 - 2833
SQ: no_0_3128142_0 - 2961
SQ: oy_0_2936927_0 - 118
SQ: oy_0_2965192_0 - 141
SQ: oy_0_2966542_0 - 143
SQ: oy_0_3001818_0 - 190
SQ: oy_0_3098144_0 - 340
SQ: oy_0_3121110_0 - 900
SQ: oy_0_3148368_0 - 1677
SQ: oy_0_3162092_0 - 2062
SQ: po_0_3293868_0 - 117
SQ: po_0_3299272_0 - 119
SQ: po_0_3306688_0 - 123
SQ: po_0_3324652_0 - 132
SQ: po_0_3330421_0 - 135
SQ: po_0_3332479_0 - 136
SQ: po_0_3340213_0 - 141
SQ: po_0_3372769_0 - 165
SQ: po_0_3382155_0 - 174
SQ: po_0_3393401_0 - 187
SQ: po_0_3507160_0 - 459
SQ: po_0_3573778_0 - 1290
SQ: po_0_3606391_0 - 2915
SQ: po_0_3606391_1 - 2117
SQ: rsch_4_4032032_0 - 101
SQ: rsch_4_4034850_0 - 102
SQ: rsch_4_4055167_0 - 113
SQ: rsch_4_4085063_0 - 134
SQ: rsch_4_4091241_0 - 139
SQ: rsch_4_4106907_0 - 156
SQ: rsch_4_4107621_0 - 156
SQ: rsch_4_4110791_0 - 160
SQ: rsch_4_4118145_0 - 170
SQ: rsch_4_4122727_0 - 176
SQ: rsch_4_4214541_0 - 234
SQ: rsch_4_4219071_0 - 439
SQ: rsch_4_4255532_0 - 564
SQ: rsch_4_4263688_0 - 845
SQ: rsch_4_4266550_0 - 1163
SQ: rsch_4_4275442_0 - 625
SQ: rsch_4_4277288_0 - 1370
SQ: rsch_4_4277566_0 - 1702
SQ: rsch_4_4292194_1 - 1135
SQ: rsch_4_4297142_0 - 304
SQ: sf_2_2459023_0 - 110
SQ: sf_2_2486157_0 - 128
SQ: sf_2_2488391_0 - 130
SQ: sf_2_2504999_0 - 145
SQ: sf_2_2524453_0 - 169
SQ: sf_2_2532172_0 - 181
SQ: sf_2_2653966_0 - 695
SQ: sf_2_2662232_0 - 116
SQ: sf_2_2671632_0 - 995
SQ: sf_2_2676583_0 - 994
SQ: sf_2_2680171_0 - 1173
SQ: sf_2_2682779_0 - 1598
SQ: sf_2_2687774_0 - 1900
SQ: sf_2_2687786_0 - 2198
SQ: sf_2_2700286_0 - 2493
SQ: sf_2_2701328_0 - 737
SQ: tsu_0_2970253_0 - 102
SQ: tsu_0_3036945_0 - 150
SQ: tsu_0_3135135_0 - 212
SQ: tsu_0_3175121_0 - 705
SQ: tsu_0_3195605_0 - 517
SQ: tsu_0_3208747_0 - 402
SQ: tsu_0_3211741_0 - 814
SQ: tsu_0_3212935_0 - 1050
SQ: tsu_0_3215671_0 - 869
SQ: tsu_0_3215737_0 - 1108
SQ: tsu_0_3215821_0 - 1361
SQ: tsu_0_3222297_0 - 477
SQ: tsu_0_3229935_0 - 2473
SQ: tsu_0_3242833_1 - 915
SQ: tsu_0_3243273_0 - 7681
SQ: wil_2_2834553_0 - 104
SQ: wil_2_2892485_0 - 147
SQ: wil_2_2906137_0 - 164
SQ: wil_2_2915899_0 - 179
SQ: wil_2_2920529_0 - 187
SQ: wil_2_2925323_0 - 195
SQ: wil_2_2945095_0 - 205
SQ: wil_2_3008461_1 - 372
SQ: wil_2_3050523_0 - 274
SQ: wil_2_3052273_0 - 1184
SQ: wil_2_3052951_0 - 917
SQ: wil_2_3054893_0 - 575
SQ: wil_2_3063473_0 - 760
SQ: wil_2_3066229_0 - 1751
SQ: wil_2_3068737_0 - 1796
SQ: wil_2_3077447_0 - 1249
SQ: wil_2_3079625_0 - 723
SQ: wil_2_3087183_0 - 844
SQ: wil_2_3088151_0 - 1916
SQ: wil_2_3089541_0 - 464
SQ: wil_2_3090237_0 - 495
SQ: wil_2_3092619_0 - 1832
SQ: ws_0_3181530_0 - 183
SQ: ws_0_3182508_0 - 185
SQ: ws_0_3190679_0 - 197
SQ: ws_0_3190963_0 - 197
SQ: ws_0_3298283_0 - 534
SQ: ws_0_3326342_0 - 850
SQ: ws_0_3339092_0 - 662
SQ: ws_0_3340488_0 - 1184
SQ: ws_0_3344070_0 - 916
SQ: ws_0_3347582_0 - 1380
SQ: ws_0_3349444_1 - 750
SQ: ws_0_3365892_0 - 2040
SQ: ws_0_3371988_0 - 2503
SQ: ws_0_3372048_0 - 2123
SQ: ws_0_3373604_0 - 3230
SQ: ws_0_3380934_0 - 3237
SQ: ws_0_3381390_0 - 1739
SQ: ws_0_3382500_0 - 4066
SQ: ws_0_3382728_0 - 3088
SQ: wu_0_2640353_0 - 135
SQ: wu_0_2654219_0 - 149
SQ: wu_0_2655481_0 - 151
SQ: wu_0_2670057_0 - 169
SQ: wu_0_2678387_0 - 182
SQ: wu_0_2679395_0 - 184
SQ: wu_0_2687576_0 - 199
SQ: wu_0_2824308_0 - 1840
SQ: wu_0_2837848_0 - 2726
SQ: zu_0_3022629_0 - 113
SQ: zu_0_3075813_0 - 144
SQ: zu_0_3082201_0 - 149
SQ: zu_0_3091101_0 - 157
SQ: zu_0_3092045_0 - 158
SQ: zu_0_3118546_0 - 192
SQ: zu_0_3119698_0 - 193
SQ: zu_0_3190435_0 - 303
SQ: zu_0_3238769_0 - 469
SQ: zu_0_3242889_0 - 635
SQ: zu_0_3243571_0 - 801
SQ: zu_0_3255169_0 - 1400
SQ: zu_0_3255503_0 - 1394
SQ: zu_0_3259399_1 - 320
SQ: zu_0_3260131_0 - 401
SQ: zu_0_3277661_0 - 913
SQ: zu_0_3278243_0 - 826
SQ: zu_0_3280213_0 - 2114
SQ: zu_0_3287867_0 - 3984
SQ: zu_0_3289907_1 - 5821
Loaded 223 junctions
Reporting final accepted alignments...done
Printing junction BED track...done
Found 213 junctions from happy spliced reads