# Config file for the UCSC Human Genome server

# the format is in the form of name/value pairs
# written 'name=value' (note that there is no space between
# the name and its value. Also, no blank lines should be in
# this file
###########################################################

include hg.conf.users

# trackDb table to use
db.trackDb=trackDb

# changing to relative path (adding "..")
browser.background=../images/floretBeta.jpg
# Comment out to disable new double/query insert highlighting options:
browser.indelOptions=on

# track search index name.  Since this resides in /gbdb/ then beta must have a uniquely named ix 
browser.trixPath=/data/trix/$db_trackDb.ix

#  customTracks database is used to hold custom tracks
#	For performance and security, it is on a separate server.
#       The database name is fixed at: customTrash
#       This is a define CUSTOM_TRASH in hg/inc/customTrack.h
#	switched to hgwslave on 2009-02-12 about 16:00
#customTracks.host=hgwslave
#	switched to customdb on 2011-12-06 at 11:00
customTracks.useAll=yes
customTracks.tmpdir=/data/tmp/ct

#  /data/tmp is the default tmpdir location, change this if desired elsewhere.
#  What you want is for it to be on a local filesystem, and it must be
#  read/write/delete enabled for the Apache browser effective user

# location of grepIndex files
grepIndex.genbank=/gbdb/genbank/grepIndex
grepIndex.default=/gbdb

# wiki items to use the login system in the genomewiki for
#       session management
#  New browser function as of May 2012, using stand alone hgLogin CGI
#  login system to replace authentication service provided by
#  genomewiki.
#  To enable the hgLogin function, set the login.systemName and
#  wiki.host
#  as below. Note, do not set the values of the two cookies to other
#  value.
login.systemName=hgLogin CGI
wiki.host=hgwbeta.cse.ucsc.edu
wiki.userNameCookie=wikidb_mw1_UserName
wiki.loggedInCookie=wikidb_mw1_UserID

# Settings to allow mirrors to set their own mail signature and return email address for hgLogin
# emails.
login.browserName=UCSC Genome Browser
login.browserAddr=http://genome.ucsc.edu
login.mailSignature=UCSC Genome Browser Staff
login.mailReturnAddr=genome-www@soe.ucsc.edu


# wikiTrack function turned on 2009, set read-only June 2012
wikiTrack.readOnly=yes
#  URL is the wiki location for the article pages
wikiTrack.URL=http://genomewiki.ucsc.edu
#  browser is the site to create links to for new wiki articles
wikiTrack.browser=hgwbeta.cse.ucsc.edu

#  List of wiki user names that have super user edit privileges
#       to wiki track items.  Currently this is only a delete item privilege.
wikiTrack.editors=Hiram
#  List of databases to enable the wikiTrack function
wikiTrack.dbList=hg18,mm9,hg19
# session cookie is used during wiki page edits
wiki.sessionCookie=wikidb_mw1__session


# Comment out to turn off survey link in hgTracks and hgGateway
# survey=on
# Change to survey=off (or remove survey setting) to retire the survey.
# survey=https://www.surveymonkey.com/s/5YYTRWQ
# surveyLabel=2011 ENCODE Usability Survey

# log signals
signalsHandler=on

# log stack dumps
browser.dumpStack=on

# node id
# browser.node=2

# Programs required for per-SNP geographic maps of HGDP population
# allele frequencies:
hgc.psxyPath=/hive/data/outside/GMT4.3.1/bin/psxy
hgc.ps2rasterPath=/hive/data/outside/GMT4.3.1/bin/ps2raster
hgc.ghostscriptPath=/usr/bin/ghostscript

udc.cacheDir=../trash/udcCache

#makes browser timeout after only 1min (instead of 20min)
#browser.cgiExpireMinutes=1

# Parallel fetching of remote network resources using bigDataUrl such as trackHubs and customTracks
# how many threads to use (set to 0 to disable)
parallelFetch.threads=100
# how long to wait in seconds for parallel fetch to finish
parallelFetch.timeout=90

# Temporary flag to help disable new custom track validator if needed
# If you turn the flag off, it reverts to the old validator 
newCustomTrackValidate=on