");
fprintf(out, "\n");
fprintf(out, "");
makeGbClusterLink(js, dy);
fprintf(out, "Id: %s ", dy->string);
makeGbLink(js, dy);
fprintf(out, "GeneName: %s ", dy->string);
makePlotLinks(js, dy);
fprintf(out, "Plots: %s ", dy->string);
fprintf(out, "Score: %.2f", js->score);
fprintf(out, " Type: %s", spliceTypeName(js->spliceType));
safef(affyName, sizeof(affyName), "%s", js->junctUsed[0]);
tmp = strchr(affyName, '@');
assert(tmp);
*tmp = '\0';
fprintf(out, " Affy \n", affyName);
fprintf(out, " | \n");
if(js->cassette == 1 && js->exonPsProbs != NULL)
{
fprintf(out,
"Exon Corr: %.2f Exon %%: %.2f Junct %%: %.2f "
"Expressed: %d | \n",
js->exonCorr, js->exonSjPercent, js->sjExonPercent, js->exonAgree + js->exonDisagree);
fprintf(out, "Exon ps: %s | \n", js->exonPsName);
}
fprintf(out, "\n");
for(junctIx = 0; junctIx < js->junctUsedCount; junctIx++)
{
col = "#bebebe";
makeJunctMdbLink(js, bedHash, dy, junctIx, probM);
fprintf(out, "Junct: %s | ", col, dy->string);
makeJunctExpressedTissues(js, dy, junctIx, probM);
col = "#ffffff";
fprintf(out, "Exp: %s | ",col, dy->string);
makeJunctNotExpressedTissues(js, dy, junctIx, probM);
fprintf(out, "Not Exp: %s | ", col, dy->string);
}
fprintf(out, " | \n");
fprintf(out, " |