/* mouseAPSetEventMap.c was originally generated by the autoSql program, which also * generated mouseAPSetEventMap.h and mouseAPSetEventMap.sql. This module links the database and * the RAM representation of objects. */ #include "common.h" #include "linefile.h" #include "dystring.h" #include "jksql.h" #include "mouseAPSetEventMap.h" struct mouseAPSetEventMap *mouseAPSetEventMapLoad(char **row) /* Load a mouseAPSetEventMap from row fetched with select * from mouseAPSetEventMap * from database. Dispose of this with mouseAPSetEventMapFree(). */ { struct mouseAPSetEventMap *ret; AllocVar(ret); ret->incCount = sqlUnsigned(row[2]); ret->geneCount = sqlUnsigned(row[4]); ret->geneName = cloneString(row[0]); ret->skipPSet = cloneString(row[1]); { int sizeOne; sqlStringDynamicArray(row[3], &ret->incPSets, &sizeOne); assert(sizeOne == ret->incCount); } { int sizeOne; sqlStringDynamicArray(row[5], &ret->genePSets, &sizeOne); assert(sizeOne == ret->geneCount); } return ret; } struct mouseAPSetEventMap *mouseAPSetEventMapLoadAll(char *fileName) /* Load all mouseAPSetEventMap from a whitespace-separated file. * Dispose of this with mouseAPSetEventMapFreeList(). */ { struct mouseAPSetEventMap *list = NULL, *el; struct lineFile *lf = lineFileOpen(fileName, TRUE); char *row[6]; while (lineFileRow(lf, row)) { el = mouseAPSetEventMapLoad(row); slAddHead(&list, el); } lineFileClose(&lf); slReverse(&list); return list; } struct mouseAPSetEventMap *mouseAPSetEventMapLoadAllByChar(char *fileName, char chopper) /* Load all mouseAPSetEventMap from a chopper separated file. * Dispose of this with mouseAPSetEventMapFreeList(). */ { struct mouseAPSetEventMap *list = NULL, *el; struct lineFile *lf = lineFileOpen(fileName, TRUE); char *row[6]; while (lineFileNextCharRow(lf, chopper, row, ArraySize(row))) { el = mouseAPSetEventMapLoad(row); slAddHead(&list, el); } lineFileClose(&lf); slReverse(&list); return list; } struct mouseAPSetEventMap *mouseAPSetEventMapLoadByQuery(struct sqlConnection *conn, char *query) /* Load all mouseAPSetEventMap from table that satisfy the query given. * Where query is of the form 'select * from example where something=something' * or 'select example.* from example, anotherTable where example.something = * anotherTable.something'. * Dispose of this with mouseAPSetEventMapFreeList(). */ { struct mouseAPSetEventMap *list = NULL, *el; struct sqlResult *sr; char **row; sr = sqlGetResult(conn, query); while ((row = sqlNextRow(sr)) != NULL) { el = mouseAPSetEventMapLoad(row); slAddHead(&list, el); } slReverse(&list); sqlFreeResult(&sr); return list; } void mouseAPSetEventMapSaveToDb(struct sqlConnection *conn, struct mouseAPSetEventMap *el, char *tableName, int updateSize) /* Save mouseAPSetEventMap as a row to the table specified by tableName. * As blob fields may be arbitrary size updateSize specifies the approx size * of a string that would contain the entire query. Arrays of native types are * converted to comma separated strings and loaded as such, User defined types are * inserted as NULL. Note that strings must be escaped to allow insertion into the database. * For example "autosql's features include" --> "autosql\'s features include" * If worried about this use mouseAPSetEventMapSaveToDbEscaped() */ { struct dyString *update = newDyString(updateSize); char *incPSetsArray, *genePSetsArray; incPSetsArray = sqlStringArrayToString(el->incPSets, el->incCount); genePSetsArray = sqlStringArrayToString(el->genePSets, el->geneCount); dyStringPrintf(update, "insert into %s values ( '%s','%s',%u,'%s',%u,'%s')", tableName, el->geneName, el->skipPSet, el->incCount, incPSetsArray , el->geneCount, genePSetsArray ); sqlUpdate(conn, update->string); freeDyString(&update); freez(&incPSetsArray); freez(&genePSetsArray); } void mouseAPSetEventMapSaveToDbEscaped(struct sqlConnection *conn, struct mouseAPSetEventMap *el, char *tableName, int updateSize) /* Save mouseAPSetEventMap as a row to the table specified by tableName. * As blob fields may be arbitrary size updateSize specifies the approx size. * of a string that would contain the entire query. Automatically * escapes all simple strings (not arrays of string) but may be slower than mouseAPSetEventMapSaveToDb(). * For example automatically copies and converts: * "autosql's features include" --> "autosql\'s features include" * before inserting into database. */ { struct dyString *update = newDyString(updateSize); char *geneName, *skipPSet, *incPSetsArray, *genePSetsArray; geneName = sqlEscapeString(el->geneName); skipPSet = sqlEscapeString(el->skipPSet); incPSetsArray = sqlStringArrayToString(el->incPSets, el->incCount); genePSetsArray = sqlStringArrayToString(el->genePSets, el->geneCount); dyStringPrintf(update, "insert into %s values ( '%s','%s',%u,'%s',%u,'%s')", tableName, geneName, skipPSet, el->incCount , incPSetsArray , el->geneCount , genePSetsArray ); sqlUpdate(conn, update->string); freeDyString(&update); freez(&geneName); freez(&skipPSet); freez(&incPSetsArray); freez(&genePSetsArray); } struct mouseAPSetEventMap *mouseAPSetEventMapCommaIn(char **pS, struct mouseAPSetEventMap *ret) /* Create a mouseAPSetEventMap out of a comma separated string. * This will fill in ret if non-null, otherwise will * return a new mouseAPSetEventMap */ { char *s = *pS; if (ret == NULL) AllocVar(ret); ret->geneName = sqlStringComma(&s); ret->skipPSet = sqlStringComma(&s); ret->incCount = sqlUnsignedComma(&s); { int i; s = sqlEatChar(s, '{'); AllocArray(ret->incPSets, ret->incCount); for (i=0; iincCount; ++i) { ret->incPSets[i] = sqlStringComma(&s); } s = sqlEatChar(s, '}'); s = sqlEatChar(s, ','); } ret->geneCount = sqlUnsignedComma(&s); { int i; s = sqlEatChar(s, '{'); AllocArray(ret->genePSets, ret->geneCount); for (i=0; igeneCount; ++i) { ret->genePSets[i] = sqlStringComma(&s); } s = sqlEatChar(s, '}'); s = sqlEatChar(s, ','); } *pS = s; return ret; } void mouseAPSetEventMapFree(struct mouseAPSetEventMap **pEl) /* Free a single dynamically allocated mouseAPSetEventMap such as created * with mouseAPSetEventMapLoad(). */ { struct mouseAPSetEventMap *el; if ((el = *pEl) == NULL) return; freeMem(el->geneName); freeMem(el->skipPSet); /* All strings in incPSets are allocated at once, so only need to free first. */ if (el->incPSets != NULL) freeMem(el->incPSets[0]); freeMem(el->incPSets); /* All strings in genePSets are allocated at once, so only need to free first. */ if (el->genePSets != NULL) freeMem(el->genePSets[0]); freeMem(el->genePSets); freez(pEl); } void mouseAPSetEventMapFreeList(struct mouseAPSetEventMap **pList) /* Free a list of dynamically allocated mouseAPSetEventMap's */ { struct mouseAPSetEventMap *el, *next; for (el = *pList; el != NULL; el = next) { next = el->next; mouseAPSetEventMapFree(&el); } *pList = NULL; } void mouseAPSetEventMapOutput(struct mouseAPSetEventMap *el, FILE *f, char sep, char lastSep) /* Print out mouseAPSetEventMap. Separate fields with sep. Follow last field with lastSep. */ { if (sep == ',') fputc('"',f); fprintf(f, "%s", el->geneName); if (sep == ',') fputc('"',f); fputc(sep,f); if (sep == ',') fputc('"',f); fprintf(f, "%s", el->skipPSet); if (sep == ',') fputc('"',f); fputc(sep,f); fprintf(f, "%u", el->incCount); fputc(sep,f); { int i; if (sep == ',') fputc('{',f); for (i=0; iincCount; ++i) { if (sep == ',') fputc('"',f); fprintf(f, "%s", el->incPSets[i]); if (sep == ',') fputc('"',f); fputc(',', f); } if (sep == ',') fputc('}',f); } fputc(sep,f); fprintf(f, "%u", el->geneCount); fputc(sep,f); { int i; if (sep == ',') fputc('{',f); for (i=0; igeneCount; ++i) { if (sep == ',') fputc('"',f); fprintf(f, "%s", el->genePSets[i]); if (sep == ',') fputc('"',f); fputc(',', f); } if (sep == ',') fputc('}',f); } fputc(lastSep,f); } /* -------------------------------- End autoSql Generated Code -------------------------------- */