/* ncbiBlast.c autoXml generated file */ /**** **** N.B. hand modified to use doubles rather than floats and to convert with sqlNum. ****/ #include "common.h" #include "xap.h" #include "ncbiBlast.h" #include "sqlNum.h" void ncbiBlastBlastOutputFree(struct ncbiBlastBlastOutput **pObj) /* Free up ncbiBlastBlastOutput. */ { struct ncbiBlastBlastOutput *obj = *pObj; if (obj == NULL) return; ncbiBlastBlastOutputProgramFree(&obj->ncbiBlastBlastOutputProgram); ncbiBlastBlastOutputVersionFree(&obj->ncbiBlastBlastOutputVersion); ncbiBlastBlastOutputReferenceFree(&obj->ncbiBlastBlastOutputReference); ncbiBlastBlastOutputDbFree(&obj->ncbiBlastBlastOutputDb); ncbiBlastBlastOutputQueryIDFree(&obj->ncbiBlastBlastOutputQueryID); ncbiBlastBlastOutputQueryDefFree(&obj->ncbiBlastBlastOutputQueryDef); ncbiBlastBlastOutputQueryLenFree(&obj->ncbiBlastBlastOutputQueryLen); ncbiBlastBlastOutputQuerySeqFree(&obj->ncbiBlastBlastOutputQuerySeq); ncbiBlastBlastOutputParamFree(&obj->ncbiBlastBlastOutputParam); ncbiBlastBlastOutputIterationsFree(&obj->ncbiBlastBlastOutputIterations); ncbiBlastBlastOutputMbstatFree(&obj->ncbiBlastBlastOutputMbstat); freez(pObj); } void ncbiBlastBlastOutputFreeList(struct ncbiBlastBlastOutput **pList) /* Free up list of ncbiBlastBlastOutput. */ { struct ncbiBlastBlastOutput *el, *next; for (el = *pList; el != NULL; el = next) { next = el->next; ncbiBlastBlastOutputFree(&el); el = next; } } void ncbiBlastBlastOutputSave(struct ncbiBlastBlastOutput *obj, int indent, FILE *f) /* Save ncbiBlastBlastOutput to file. */ { if (obj == NULL) return; xapIndent(indent, f); fprintf(f, ""); fprintf(f, "\n"); ncbiBlastBlastOutputProgramSave(obj->ncbiBlastBlastOutputProgram, indent+2, f); ncbiBlastBlastOutputVersionSave(obj->ncbiBlastBlastOutputVersion, indent+2, f); ncbiBlastBlastOutputReferenceSave(obj->ncbiBlastBlastOutputReference, indent+2, f); ncbiBlastBlastOutputDbSave(obj->ncbiBlastBlastOutputDb, indent+2, f); ncbiBlastBlastOutputQueryIDSave(obj->ncbiBlastBlastOutputQueryID, indent+2, f); ncbiBlastBlastOutputQueryDefSave(obj->ncbiBlastBlastOutputQueryDef, indent+2, f); ncbiBlastBlastOutputQueryLenSave(obj->ncbiBlastBlastOutputQueryLen, indent+2, f); ncbiBlastBlastOutputQuerySeqSave(obj->ncbiBlastBlastOutputQuerySeq, indent+2, f); ncbiBlastBlastOutputParamSave(obj->ncbiBlastBlastOutputParam, indent+2, f); ncbiBlastBlastOutputIterationsSave(obj->ncbiBlastBlastOutputIterations, indent+2, f); ncbiBlastBlastOutputMbstatSave(obj->ncbiBlastBlastOutputMbstat, indent+2, f); xapIndent(indent, f); fprintf(f, "\n"); } struct ncbiBlastBlastOutput *ncbiBlastBlastOutputLoad(char *fileName) /* Load ncbiBlastBlastOutput from XML file where it is root element. */ { struct ncbiBlastBlastOutput *obj; xapParseAny(fileName, "BlastOutput", ncbiBlastStartHandler, ncbiBlastEndHandler, NULL, &obj); return obj; } struct ncbiBlastBlastOutput *ncbiBlastBlastOutputLoadNext(struct xap *xap) /* Load next ncbiBlastBlastOutput element. Use xapOpen to get xap. */ { return xapNext(xap, "BlastOutput"); } void ncbiBlastBlastOutputProgramFree(struct ncbiBlastBlastOutputProgram **pObj) /* Free up ncbiBlastBlastOutputProgram. */ { struct ncbiBlastBlastOutputProgram *obj = *pObj; if (obj == NULL) return; freeMem(obj->text); freez(pObj); } void ncbiBlastBlastOutputProgramFreeList(struct ncbiBlastBlastOutputProgram **pList) /* Free up list of ncbiBlastBlastOutputProgram. */ { struct ncbiBlastBlastOutputProgram *el, *next; for (el = *pList; el != NULL; el = next) { next = el->next; ncbiBlastBlastOutputProgramFree(&el); el = next; } } void ncbiBlastBlastOutputProgramSave(struct ncbiBlastBlastOutputProgram *obj, int indent, FILE *f) /* Save ncbiBlastBlastOutputProgram to file. */ { if (obj == NULL) return; xapIndent(indent, f); fprintf(f, ""); fprintf(f, "%s", obj->text); fprintf(f, "\n"); } struct ncbiBlastBlastOutputProgram *ncbiBlastBlastOutputProgramLoad(char *fileName) /* Load ncbiBlastBlastOutputProgram from XML file where it is root element. */ { struct ncbiBlastBlastOutputProgram *obj; xapParseAny(fileName, "BlastOutput_program", ncbiBlastStartHandler, ncbiBlastEndHandler, NULL, &obj); return obj; } struct ncbiBlastBlastOutputProgram *ncbiBlastBlastOutputProgramLoadNext(struct xap *xap) /* Load next ncbiBlastBlastOutputProgram element. Use xapOpen to get xap. */ { return xapNext(xap, "BlastOutput_program"); } void ncbiBlastBlastOutputVersionFree(struct ncbiBlastBlastOutputVersion **pObj) /* Free up ncbiBlastBlastOutputVersion. */ { struct ncbiBlastBlastOutputVersion *obj = *pObj; if (obj == NULL) return; freeMem(obj->text); freez(pObj); } void ncbiBlastBlastOutputVersionFreeList(struct ncbiBlastBlastOutputVersion **pList) /* Free up list of ncbiBlastBlastOutputVersion. */ { struct ncbiBlastBlastOutputVersion *el, *next; for (el = *pList; el != NULL; el = next) { next = el->next; ncbiBlastBlastOutputVersionFree(&el); el = next; } } void ncbiBlastBlastOutputVersionSave(struct ncbiBlastBlastOutputVersion *obj, int indent, FILE *f) /* Save ncbiBlastBlastOutputVersion to file. */ { if (obj == NULL) return; xapIndent(indent, f); fprintf(f, ""); fprintf(f, "%s", obj->text); fprintf(f, "\n"); } struct ncbiBlastBlastOutputVersion *ncbiBlastBlastOutputVersionLoad(char *fileName) /* Load ncbiBlastBlastOutputVersion from XML file where it is root element. */ { struct ncbiBlastBlastOutputVersion *obj; xapParseAny(fileName, "BlastOutput_version", ncbiBlastStartHandler, ncbiBlastEndHandler, NULL, &obj); return obj; } struct ncbiBlastBlastOutputVersion *ncbiBlastBlastOutputVersionLoadNext(struct xap *xap) /* Load next ncbiBlastBlastOutputVersion element. Use xapOpen to get xap. */ { return xapNext(xap, "BlastOutput_version"); } void ncbiBlastBlastOutputReferenceFree(struct ncbiBlastBlastOutputReference **pObj) /* Free up ncbiBlastBlastOutputReference. */ { struct ncbiBlastBlastOutputReference *obj = *pObj; if (obj == NULL) return; freeMem(obj->text); freez(pObj); } void ncbiBlastBlastOutputReferenceFreeList(struct ncbiBlastBlastOutputReference **pList) /* Free up list of ncbiBlastBlastOutputReference. */ { struct ncbiBlastBlastOutputReference *el, *next; for (el = *pList; el != NULL; el = next) { next = el->next; ncbiBlastBlastOutputReferenceFree(&el); el = next; } } void ncbiBlastBlastOutputReferenceSave(struct ncbiBlastBlastOutputReference *obj, int indent, FILE *f) /* Save ncbiBlastBlastOutputReference to file. */ { if (obj == NULL) return; xapIndent(indent, f); fprintf(f, ""); fprintf(f, "%s", obj->text); fprintf(f, "\n"); } struct ncbiBlastBlastOutputReference *ncbiBlastBlastOutputReferenceLoad(char *fileName) /* Load ncbiBlastBlastOutputReference from XML file where it is root element. */ { struct ncbiBlastBlastOutputReference *obj; xapParseAny(fileName, "BlastOutput_reference", ncbiBlastStartHandler, ncbiBlastEndHandler, NULL, &obj); return obj; } struct ncbiBlastBlastOutputReference *ncbiBlastBlastOutputReferenceLoadNext(struct xap *xap) /* Load next ncbiBlastBlastOutputReference element. Use xapOpen to get xap. */ { return xapNext(xap, "BlastOutput_reference"); } void ncbiBlastBlastOutputDbFree(struct ncbiBlastBlastOutputDb **pObj) /* Free up ncbiBlastBlastOutputDb. */ { struct ncbiBlastBlastOutputDb *obj = *pObj; if (obj == NULL) return; freeMem(obj->text); freez(pObj); } void ncbiBlastBlastOutputDbFreeList(struct ncbiBlastBlastOutputDb **pList) /* Free up list of ncbiBlastBlastOutputDb. */ { struct ncbiBlastBlastOutputDb *el, *next; for (el = *pList; el != NULL; el = next) { next = el->next; ncbiBlastBlastOutputDbFree(&el); el = next; } } void ncbiBlastBlastOutputDbSave(struct ncbiBlastBlastOutputDb *obj, int indent, FILE *f) /* Save ncbiBlastBlastOutputDb to file. */ { if (obj == NULL) return; xapIndent(indent, f); fprintf(f, ""); fprintf(f, "%s", obj->text); fprintf(f, "\n"); } struct ncbiBlastBlastOutputDb *ncbiBlastBlastOutputDbLoad(char *fileName) /* Load ncbiBlastBlastOutputDb from XML file where it is root element. */ { struct ncbiBlastBlastOutputDb *obj; xapParseAny(fileName, "BlastOutput_db", ncbiBlastStartHandler, ncbiBlastEndHandler, NULL, &obj); return obj; } struct ncbiBlastBlastOutputDb *ncbiBlastBlastOutputDbLoadNext(struct xap *xap) /* Load next ncbiBlastBlastOutputDb element. Use xapOpen to get xap. */ { return xapNext(xap, "BlastOutput_db"); } void ncbiBlastBlastOutputQueryIDFree(struct ncbiBlastBlastOutputQueryID **pObj) /* Free up ncbiBlastBlastOutputQueryID. */ { struct ncbiBlastBlastOutputQueryID *obj = *pObj; if (obj == NULL) return; freeMem(obj->text); freez(pObj); } void ncbiBlastBlastOutputQueryIDFreeList(struct ncbiBlastBlastOutputQueryID **pList) /* Free up list of ncbiBlastBlastOutputQueryID. */ { struct ncbiBlastBlastOutputQueryID *el, *next; for (el = *pList; el != NULL; el = next) { next = el->next; ncbiBlastBlastOutputQueryIDFree(&el); el = next; } } void ncbiBlastBlastOutputQueryIDSave(struct ncbiBlastBlastOutputQueryID *obj, int indent, FILE *f) /* Save ncbiBlastBlastOutputQueryID to file. */ { if (obj == NULL) return; xapIndent(indent, f); fprintf(f, ""); fprintf(f, "%s", obj->text); fprintf(f, "\n"); } struct ncbiBlastBlastOutputQueryID *ncbiBlastBlastOutputQueryIDLoad(char *fileName) /* Load ncbiBlastBlastOutputQueryID from XML file where it is root element. */ { struct ncbiBlastBlastOutputQueryID *obj; xapParseAny(fileName, "BlastOutput_query-ID", ncbiBlastStartHandler, ncbiBlastEndHandler, NULL, &obj); return obj; } struct ncbiBlastBlastOutputQueryID *ncbiBlastBlastOutputQueryIDLoadNext(struct xap *xap) /* Load next ncbiBlastBlastOutputQueryID element. Use xapOpen to get xap. */ { return xapNext(xap, "BlastOutput_query-ID"); } void ncbiBlastBlastOutputQueryDefFree(struct ncbiBlastBlastOutputQueryDef **pObj) /* Free up ncbiBlastBlastOutputQueryDef. */ { struct ncbiBlastBlastOutputQueryDef *obj = *pObj; if (obj == NULL) return; freeMem(obj->text); freez(pObj); } void ncbiBlastBlastOutputQueryDefFreeList(struct ncbiBlastBlastOutputQueryDef **pList) /* Free up list of ncbiBlastBlastOutputQueryDef. */ { struct ncbiBlastBlastOutputQueryDef *el, *next; for (el = *pList; el != NULL; el = next) { next = el->next; ncbiBlastBlastOutputQueryDefFree(&el); el = next; } } void ncbiBlastBlastOutputQueryDefSave(struct ncbiBlastBlastOutputQueryDef *obj, int indent, FILE *f) /* Save ncbiBlastBlastOutputQueryDef to file. */ { if (obj == NULL) return; xapIndent(indent, f); fprintf(f, ""); fprintf(f, "%s", obj->text); fprintf(f, "\n"); } struct ncbiBlastBlastOutputQueryDef *ncbiBlastBlastOutputQueryDefLoad(char *fileName) /* Load ncbiBlastBlastOutputQueryDef from XML file where it is root element. */ { struct ncbiBlastBlastOutputQueryDef *obj; xapParseAny(fileName, "BlastOutput_query-def", ncbiBlastStartHandler, ncbiBlastEndHandler, NULL, &obj); return obj; } struct ncbiBlastBlastOutputQueryDef *ncbiBlastBlastOutputQueryDefLoadNext(struct xap *xap) /* Load next ncbiBlastBlastOutputQueryDef element. Use xapOpen to get xap. */ { return xapNext(xap, "BlastOutput_query-def"); } void ncbiBlastBlastOutputQueryLenFree(struct ncbiBlastBlastOutputQueryLen **pObj) /* Free up ncbiBlastBlastOutputQueryLen. */ { struct ncbiBlastBlastOutputQueryLen *obj = *pObj; if (obj == NULL) return; freez(pObj); } void ncbiBlastBlastOutputQueryLenFreeList(struct ncbiBlastBlastOutputQueryLen **pList) /* Free up list of ncbiBlastBlastOutputQueryLen. */ { struct ncbiBlastBlastOutputQueryLen *el, *next; for (el = *pList; el != NULL; el = next) { next = el->next; ncbiBlastBlastOutputQueryLenFree(&el); el = next; } } void ncbiBlastBlastOutputQueryLenSave(struct ncbiBlastBlastOutputQueryLen *obj, int indent, FILE *f) /* Save ncbiBlastBlastOutputQueryLen to file. */ { if (obj == NULL) return; xapIndent(indent, f); fprintf(f, ""); fprintf(f, "%d", obj->text); fprintf(f, "\n"); } struct ncbiBlastBlastOutputQueryLen *ncbiBlastBlastOutputQueryLenLoad(char *fileName) /* Load ncbiBlastBlastOutputQueryLen from XML file where it is root element. */ { struct ncbiBlastBlastOutputQueryLen *obj; xapParseAny(fileName, "BlastOutput_query-len", ncbiBlastStartHandler, ncbiBlastEndHandler, NULL, &obj); return obj; } struct ncbiBlastBlastOutputQueryLen *ncbiBlastBlastOutputQueryLenLoadNext(struct xap *xap) /* Load next ncbiBlastBlastOutputQueryLen element. Use xapOpen to get xap. */ { return xapNext(xap, "BlastOutput_query-len"); } void ncbiBlastBlastOutputQuerySeqFree(struct ncbiBlastBlastOutputQuerySeq **pObj) /* Free up ncbiBlastBlastOutputQuerySeq. */ { struct ncbiBlastBlastOutputQuerySeq *obj = *pObj; if (obj == NULL) return; freeMem(obj->text); freez(pObj); } void ncbiBlastBlastOutputQuerySeqFreeList(struct ncbiBlastBlastOutputQuerySeq **pList) /* Free up list of ncbiBlastBlastOutputQuerySeq. */ { struct ncbiBlastBlastOutputQuerySeq *el, *next; for (el = *pList; el != NULL; el = next) { next = el->next; ncbiBlastBlastOutputQuerySeqFree(&el); el = next; } } void ncbiBlastBlastOutputQuerySeqSave(struct ncbiBlastBlastOutputQuerySeq *obj, int indent, FILE *f) /* Save ncbiBlastBlastOutputQuerySeq to file. */ { if (obj == NULL) return; xapIndent(indent, f); fprintf(f, ""); fprintf(f, "%s", obj->text); fprintf(f, "\n"); } struct ncbiBlastBlastOutputQuerySeq *ncbiBlastBlastOutputQuerySeqLoad(char *fileName) /* Load ncbiBlastBlastOutputQuerySeq from XML file where it is root element. */ { struct ncbiBlastBlastOutputQuerySeq *obj; xapParseAny(fileName, "BlastOutput_query-seq", ncbiBlastStartHandler, ncbiBlastEndHandler, NULL, &obj); return obj; } struct ncbiBlastBlastOutputQuerySeq *ncbiBlastBlastOutputQuerySeqLoadNext(struct xap *xap) /* Load next ncbiBlastBlastOutputQuerySeq element. Use xapOpen to get xap. */ { return xapNext(xap, "BlastOutput_query-seq"); } void ncbiBlastBlastOutputParamFree(struct ncbiBlastBlastOutputParam **pObj) /* Free up ncbiBlastBlastOutputParam. */ { struct ncbiBlastBlastOutputParam *obj = *pObj; if (obj == NULL) return; ncbiBlastParametersFree(&obj->ncbiBlastParameters); freez(pObj); } void ncbiBlastBlastOutputParamFreeList(struct ncbiBlastBlastOutputParam **pList) /* Free up list of ncbiBlastBlastOutputParam. */ { struct ncbiBlastBlastOutputParam *el, *next; for (el = *pList; el != NULL; el = next) { next = el->next; ncbiBlastBlastOutputParamFree(&el); el = next; } } void ncbiBlastBlastOutputParamSave(struct ncbiBlastBlastOutputParam *obj, int indent, FILE *f) /* Save ncbiBlastBlastOutputParam to file. */ { if (obj == NULL) return; xapIndent(indent, f); fprintf(f, ""); fprintf(f, "\n"); ncbiBlastParametersSave(obj->ncbiBlastParameters, indent+2, f); xapIndent(indent, f); fprintf(f, "\n"); } struct ncbiBlastBlastOutputParam *ncbiBlastBlastOutputParamLoad(char *fileName) /* Load ncbiBlastBlastOutputParam from XML file where it is root element. */ { struct ncbiBlastBlastOutputParam *obj; xapParseAny(fileName, "BlastOutput_param", ncbiBlastStartHandler, ncbiBlastEndHandler, NULL, &obj); return obj; } struct ncbiBlastBlastOutputParam *ncbiBlastBlastOutputParamLoadNext(struct xap *xap) /* Load next ncbiBlastBlastOutputParam element. Use xapOpen to get xap. */ { return xapNext(xap, "BlastOutput_param"); } void ncbiBlastBlastOutputIterationsFree(struct ncbiBlastBlastOutputIterations **pObj) /* Free up ncbiBlastBlastOutputIterations. */ { struct ncbiBlastBlastOutputIterations *obj = *pObj; if (obj == NULL) return; ncbiBlastIterationFreeList(&obj->ncbiBlastIteration); freez(pObj); } void ncbiBlastBlastOutputIterationsFreeList(struct ncbiBlastBlastOutputIterations **pList) /* Free up list of ncbiBlastBlastOutputIterations. */ { struct ncbiBlastBlastOutputIterations *el, *next; for (el = *pList; el != NULL; el = next) { next = el->next; ncbiBlastBlastOutputIterationsFree(&el); el = next; } } void ncbiBlastBlastOutputIterationsSave(struct ncbiBlastBlastOutputIterations *obj, int indent, FILE *f) /* Save ncbiBlastBlastOutputIterations to file. */ { struct ncbiBlastIteration *ncbiBlastIteration; boolean isNode = TRUE; if (obj == NULL) return; xapIndent(indent, f); fprintf(f, ""); for (ncbiBlastIteration = obj->ncbiBlastIteration; ncbiBlastIteration != NULL; ncbiBlastIteration = ncbiBlastIteration->next) { if (isNode) { fprintf(f, "\n"); isNode = FALSE; } ncbiBlastIterationSave(ncbiBlastIteration, indent+2, f); } if (!isNode) xapIndent(indent, f); fprintf(f, "\n"); } struct ncbiBlastBlastOutputIterations *ncbiBlastBlastOutputIterationsLoad(char *fileName) /* Load ncbiBlastBlastOutputIterations from XML file where it is root element. */ { struct ncbiBlastBlastOutputIterations *obj; xapParseAny(fileName, "BlastOutput_iterations", ncbiBlastStartHandler, ncbiBlastEndHandler, NULL, &obj); return obj; } struct ncbiBlastBlastOutputIterations *ncbiBlastBlastOutputIterationsLoadNext(struct xap *xap) /* Load next ncbiBlastBlastOutputIterations element. Use xapOpen to get xap. */ { return xapNext(xap, "BlastOutput_iterations"); } void ncbiBlastBlastOutputMbstatFree(struct ncbiBlastBlastOutputMbstat **pObj) /* Free up ncbiBlastBlastOutputMbstat. */ { struct ncbiBlastBlastOutputMbstat *obj = *pObj; if (obj == NULL) return; ncbiBlastStatisticsFree(&obj->ncbiBlastStatistics); freez(pObj); } void ncbiBlastBlastOutputMbstatFreeList(struct ncbiBlastBlastOutputMbstat **pList) /* Free up list of ncbiBlastBlastOutputMbstat. */ { struct ncbiBlastBlastOutputMbstat *el, *next; for (el = *pList; el != NULL; el = next) { next = el->next; ncbiBlastBlastOutputMbstatFree(&el); el = next; } } void ncbiBlastBlastOutputMbstatSave(struct ncbiBlastBlastOutputMbstat *obj, int indent, FILE *f) /* Save ncbiBlastBlastOutputMbstat to file. */ { if (obj == NULL) return; xapIndent(indent, f); fprintf(f, ""); fprintf(f, "\n"); ncbiBlastStatisticsSave(obj->ncbiBlastStatistics, indent+2, f); xapIndent(indent, f); fprintf(f, "\n"); } struct ncbiBlastBlastOutputMbstat *ncbiBlastBlastOutputMbstatLoad(char *fileName) /* Load ncbiBlastBlastOutputMbstat from XML file where it is root element. */ { struct ncbiBlastBlastOutputMbstat *obj; xapParseAny(fileName, "BlastOutput_mbstat", ncbiBlastStartHandler, ncbiBlastEndHandler, NULL, &obj); return obj; } struct ncbiBlastBlastOutputMbstat *ncbiBlastBlastOutputMbstatLoadNext(struct xap *xap) /* Load next ncbiBlastBlastOutputMbstat element. Use xapOpen to get xap. */ { return xapNext(xap, "BlastOutput_mbstat"); } void ncbiBlastIterationFree(struct ncbiBlastIteration **pObj) /* Free up ncbiBlastIteration. */ { struct ncbiBlastIteration *obj = *pObj; if (obj == NULL) return; ncbiBlastIterationIterNumFree(&obj->ncbiBlastIterationIterNum); ncbiBlastIterationQueryIDFree(&obj->ncbiBlastIterationQueryID); ncbiBlastIterationQueryDefFree(&obj->ncbiBlastIterationQueryDef); ncbiBlastIterationQueryLenFree(&obj->ncbiBlastIterationQueryLen); ncbiBlastIterationHitsFree(&obj->ncbiBlastIterationHits); ncbiBlastIterationStatFree(&obj->ncbiBlastIterationStat); ncbiBlastIterationMessageFree(&obj->ncbiBlastIterationMessage); freez(pObj); } void ncbiBlastIterationFreeList(struct ncbiBlastIteration **pList) /* Free up list of ncbiBlastIteration. */ { struct ncbiBlastIteration *el, *next; for (el = *pList; el != NULL; el = next) { next = el->next; ncbiBlastIterationFree(&el); el = next; } } void ncbiBlastIterationSave(struct ncbiBlastIteration *obj, int indent, FILE *f) /* Save ncbiBlastIteration to file. */ { if (obj == NULL) return; xapIndent(indent, f); fprintf(f, ""); fprintf(f, "\n"); ncbiBlastIterationIterNumSave(obj->ncbiBlastIterationIterNum, indent+2, f); ncbiBlastIterationQueryIDSave(obj->ncbiBlastIterationQueryID, indent+2, f); ncbiBlastIterationQueryDefSave(obj->ncbiBlastIterationQueryDef, indent+2, f); ncbiBlastIterationQueryLenSave(obj->ncbiBlastIterationQueryLen, indent+2, f); ncbiBlastIterationHitsSave(obj->ncbiBlastIterationHits, indent+2, f); ncbiBlastIterationStatSave(obj->ncbiBlastIterationStat, indent+2, f); ncbiBlastIterationMessageSave(obj->ncbiBlastIterationMessage, indent+2, f); xapIndent(indent, f); fprintf(f, "\n"); } struct ncbiBlastIteration *ncbiBlastIterationLoad(char *fileName) /* Load ncbiBlastIteration from XML file where it is root element. */ { struct ncbiBlastIteration *obj; xapParseAny(fileName, "Iteration", ncbiBlastStartHandler, ncbiBlastEndHandler, NULL, &obj); return obj; } struct ncbiBlastIteration *ncbiBlastIterationLoadNext(struct xap *xap) /* Load next ncbiBlastIteration element. Use xapOpen to get xap. */ { return xapNext(xap, "Iteration"); } void ncbiBlastIterationIterNumFree(struct ncbiBlastIterationIterNum **pObj) /* Free up ncbiBlastIterationIterNum. */ { struct ncbiBlastIterationIterNum *obj = *pObj; if (obj == NULL) return; freez(pObj); } void ncbiBlastIterationIterNumFreeList(struct ncbiBlastIterationIterNum **pList) /* Free up list of ncbiBlastIterationIterNum. */ { struct ncbiBlastIterationIterNum *el, *next; for (el = *pList; el != NULL; el = next) { next = el->next; ncbiBlastIterationIterNumFree(&el); el = next; } } void ncbiBlastIterationIterNumSave(struct ncbiBlastIterationIterNum *obj, int indent, FILE *f) /* Save ncbiBlastIterationIterNum to file. */ { if (obj == NULL) return; xapIndent(indent, f); fprintf(f, ""); fprintf(f, "%d", obj->text); fprintf(f, "\n"); } struct ncbiBlastIterationIterNum *ncbiBlastIterationIterNumLoad(char *fileName) /* Load ncbiBlastIterationIterNum from XML file where it is root element. */ { struct ncbiBlastIterationIterNum *obj; xapParseAny(fileName, "Iteration_iter-num", ncbiBlastStartHandler, ncbiBlastEndHandler, NULL, &obj); return obj; } struct ncbiBlastIterationIterNum *ncbiBlastIterationIterNumLoadNext(struct xap *xap) /* Load next ncbiBlastIterationIterNum element. Use xapOpen to get xap. */ { return xapNext(xap, "Iteration_iter-num"); } void ncbiBlastIterationQueryIDFree(struct ncbiBlastIterationQueryID **pObj) /* Free up ncbiBlastIterationQueryID. */ { struct ncbiBlastIterationQueryID *obj = *pObj; if (obj == NULL) return; freeMem(obj->text); freez(pObj); } void ncbiBlastIterationQueryIDFreeList(struct ncbiBlastIterationQueryID **pList) /* Free up list of ncbiBlastIterationQueryID. */ { struct ncbiBlastIterationQueryID *el, *next; for (el = *pList; el != NULL; el = next) { next = el->next; ncbiBlastIterationQueryIDFree(&el); el = next; } } void ncbiBlastIterationQueryIDSave(struct ncbiBlastIterationQueryID *obj, int indent, FILE *f) /* Save ncbiBlastIterationQueryID to file. */ { if (obj == NULL) return; xapIndent(indent, f); fprintf(f, ""); fprintf(f, "%s", obj->text); fprintf(f, "\n"); } struct ncbiBlastIterationQueryID *ncbiBlastIterationQueryIDLoad(char *fileName) /* Load ncbiBlastIterationQueryID from XML file where it is root element. */ { struct ncbiBlastIterationQueryID *obj; xapParseAny(fileName, "Iteration_query-ID", ncbiBlastStartHandler, ncbiBlastEndHandler, NULL, &obj); return obj; } struct ncbiBlastIterationQueryID *ncbiBlastIterationQueryIDLoadNext(struct xap *xap) /* Load next ncbiBlastIterationQueryID element. Use xapOpen to get xap. */ { return xapNext(xap, "Iteration_query-ID"); } void ncbiBlastIterationQueryDefFree(struct ncbiBlastIterationQueryDef **pObj) /* Free up ncbiBlastIterationQueryDef. */ { struct ncbiBlastIterationQueryDef *obj = *pObj; if (obj == NULL) return; freeMem(obj->text); freez(pObj); } void ncbiBlastIterationQueryDefFreeList(struct ncbiBlastIterationQueryDef **pList) /* Free up list of ncbiBlastIterationQueryDef. */ { struct ncbiBlastIterationQueryDef *el, *next; for (el = *pList; el != NULL; el = next) { next = el->next; ncbiBlastIterationQueryDefFree(&el); el = next; } } void ncbiBlastIterationQueryDefSave(struct ncbiBlastIterationQueryDef *obj, int indent, FILE *f) /* Save ncbiBlastIterationQueryDef to file. */ { if (obj == NULL) return; xapIndent(indent, f); fprintf(f, ""); fprintf(f, "%s", obj->text); fprintf(f, "\n"); } struct ncbiBlastIterationQueryDef *ncbiBlastIterationQueryDefLoad(char *fileName) /* Load ncbiBlastIterationQueryDef from XML file where it is root element. */ { struct ncbiBlastIterationQueryDef *obj; xapParseAny(fileName, "Iteration_query-def", ncbiBlastStartHandler, ncbiBlastEndHandler, NULL, &obj); return obj; } struct ncbiBlastIterationQueryDef *ncbiBlastIterationQueryDefLoadNext(struct xap *xap) /* Load next ncbiBlastIterationQueryDef element. Use xapOpen to get xap. */ { return xapNext(xap, "Iteration_query-def"); } void ncbiBlastIterationQueryLenFree(struct ncbiBlastIterationQueryLen **pObj) /* Free up ncbiBlastIterationQueryLen. */ { struct ncbiBlastIterationQueryLen *obj = *pObj; if (obj == NULL) return; freez(pObj); } void ncbiBlastIterationQueryLenFreeList(struct ncbiBlastIterationQueryLen **pList) /* Free up list of ncbiBlastIterationQueryLen. */ { struct ncbiBlastIterationQueryLen *el, *next; for (el = *pList; el != NULL; el = next) { next = el->next; ncbiBlastIterationQueryLenFree(&el); el = next; } } void ncbiBlastIterationQueryLenSave(struct ncbiBlastIterationQueryLen *obj, int indent, FILE *f) /* Save ncbiBlastIterationQueryLen to file. */ { if (obj == NULL) return; xapIndent(indent, f); fprintf(f, ""); fprintf(f, "%d", obj->text); fprintf(f, "\n"); } struct ncbiBlastIterationQueryLen *ncbiBlastIterationQueryLenLoad(char *fileName) /* Load ncbiBlastIterationQueryLen from XML file where it is root element. */ { struct ncbiBlastIterationQueryLen *obj; xapParseAny(fileName, "Iteration_query-len", ncbiBlastStartHandler, ncbiBlastEndHandler, NULL, &obj); return obj; } struct ncbiBlastIterationQueryLen *ncbiBlastIterationQueryLenLoadNext(struct xap *xap) /* Load next ncbiBlastIterationQueryLen element. Use xapOpen to get xap. */ { return xapNext(xap, "Iteration_query-len"); } void ncbiBlastIterationHitsFree(struct ncbiBlastIterationHits **pObj) /* Free up ncbiBlastIterationHits. */ { struct ncbiBlastIterationHits *obj = *pObj; if (obj == NULL) return; ncbiBlastHitFreeList(&obj->ncbiBlastHit); freez(pObj); } void ncbiBlastIterationHitsFreeList(struct ncbiBlastIterationHits **pList) /* Free up list of ncbiBlastIterationHits. */ { struct ncbiBlastIterationHits *el, *next; for (el = *pList; el != NULL; el = next) { next = el->next; ncbiBlastIterationHitsFree(&el); el = next; } } void ncbiBlastIterationHitsSave(struct ncbiBlastIterationHits *obj, int indent, FILE *f) /* Save ncbiBlastIterationHits to file. */ { struct ncbiBlastHit *ncbiBlastHit; boolean isNode = TRUE; if (obj == NULL) return; xapIndent(indent, f); fprintf(f, ""); for (ncbiBlastHit = obj->ncbiBlastHit; ncbiBlastHit != NULL; ncbiBlastHit = ncbiBlastHit->next) { if (isNode) { fprintf(f, "\n"); isNode = FALSE; } ncbiBlastHitSave(ncbiBlastHit, indent+2, f); } if (!isNode) xapIndent(indent, f); fprintf(f, "\n"); } struct ncbiBlastIterationHits *ncbiBlastIterationHitsLoad(char *fileName) /* Load ncbiBlastIterationHits from XML file where it is root element. */ { struct ncbiBlastIterationHits *obj; xapParseAny(fileName, "Iteration_hits", ncbiBlastStartHandler, ncbiBlastEndHandler, NULL, &obj); return obj; } struct ncbiBlastIterationHits *ncbiBlastIterationHitsLoadNext(struct xap *xap) /* Load next ncbiBlastIterationHits element. Use xapOpen to get xap. */ { return xapNext(xap, "Iteration_hits"); } void ncbiBlastIterationStatFree(struct ncbiBlastIterationStat **pObj) /* Free up ncbiBlastIterationStat. */ { struct ncbiBlastIterationStat *obj = *pObj; if (obj == NULL) return; ncbiBlastStatisticsFree(&obj->ncbiBlastStatistics); freez(pObj); } void ncbiBlastIterationStatFreeList(struct ncbiBlastIterationStat **pList) /* Free up list of ncbiBlastIterationStat. */ { struct ncbiBlastIterationStat *el, *next; for (el = *pList; el != NULL; el = next) { next = el->next; ncbiBlastIterationStatFree(&el); el = next; } } void ncbiBlastIterationStatSave(struct ncbiBlastIterationStat *obj, int indent, FILE *f) /* Save ncbiBlastIterationStat to file. */ { if (obj == NULL) return; xapIndent(indent, f); fprintf(f, ""); fprintf(f, "\n"); ncbiBlastStatisticsSave(obj->ncbiBlastStatistics, indent+2, f); xapIndent(indent, f); fprintf(f, "\n"); } struct ncbiBlastIterationStat *ncbiBlastIterationStatLoad(char *fileName) /* Load ncbiBlastIterationStat from XML file where it is root element. */ { struct ncbiBlastIterationStat *obj; xapParseAny(fileName, "Iteration_stat", ncbiBlastStartHandler, ncbiBlastEndHandler, NULL, &obj); return obj; } struct ncbiBlastIterationStat *ncbiBlastIterationStatLoadNext(struct xap *xap) /* Load next ncbiBlastIterationStat element. Use xapOpen to get xap. */ { return xapNext(xap, "Iteration_stat"); } void ncbiBlastIterationMessageFree(struct ncbiBlastIterationMessage **pObj) /* Free up ncbiBlastIterationMessage. */ { struct ncbiBlastIterationMessage *obj = *pObj; if (obj == NULL) return; freeMem(obj->text); freez(pObj); } void ncbiBlastIterationMessageFreeList(struct ncbiBlastIterationMessage **pList) /* Free up list of ncbiBlastIterationMessage. */ { struct ncbiBlastIterationMessage *el, *next; for (el = *pList; el != NULL; el = next) { next = el->next; ncbiBlastIterationMessageFree(&el); el = next; } } void ncbiBlastIterationMessageSave(struct ncbiBlastIterationMessage *obj, int indent, FILE *f) /* Save ncbiBlastIterationMessage to file. */ { if (obj == NULL) return; xapIndent(indent, f); fprintf(f, ""); fprintf(f, "%s", obj->text); fprintf(f, "\n"); } struct ncbiBlastIterationMessage *ncbiBlastIterationMessageLoad(char *fileName) /* Load ncbiBlastIterationMessage from XML file where it is root element. */ { struct ncbiBlastIterationMessage *obj; xapParseAny(fileName, "Iteration_message", ncbiBlastStartHandler, ncbiBlastEndHandler, NULL, &obj); return obj; } struct ncbiBlastIterationMessage *ncbiBlastIterationMessageLoadNext(struct xap *xap) /* Load next ncbiBlastIterationMessage element. Use xapOpen to get xap. */ { return xapNext(xap, "Iteration_message"); } void ncbiBlastParametersFree(struct ncbiBlastParameters **pObj) /* Free up ncbiBlastParameters. */ { struct ncbiBlastParameters *obj = *pObj; if (obj == NULL) return; ncbiBlastParametersMatrixFree(&obj->ncbiBlastParametersMatrix); ncbiBlastParametersExpectFree(&obj->ncbiBlastParametersExpect); ncbiBlastParametersIncludeFree(&obj->ncbiBlastParametersInclude); ncbiBlastParametersScMatchFree(&obj->ncbiBlastParametersScMatch); ncbiBlastParametersScMismatchFree(&obj->ncbiBlastParametersScMismatch); ncbiBlastParametersGapOpenFree(&obj->ncbiBlastParametersGapOpen); ncbiBlastParametersGapExtendFree(&obj->ncbiBlastParametersGapExtend); ncbiBlastParametersFilterFree(&obj->ncbiBlastParametersFilter); ncbiBlastParametersPatternFree(&obj->ncbiBlastParametersPattern); ncbiBlastParametersEntrezQueryFree(&obj->ncbiBlastParametersEntrezQuery); freez(pObj); } void ncbiBlastParametersFreeList(struct ncbiBlastParameters **pList) /* Free up list of ncbiBlastParameters. */ { struct ncbiBlastParameters *el, *next; for (el = *pList; el != NULL; el = next) { next = el->next; ncbiBlastParametersFree(&el); el = next; } } void ncbiBlastParametersSave(struct ncbiBlastParameters *obj, int indent, FILE *f) /* Save ncbiBlastParameters to file. */ { if (obj == NULL) return; xapIndent(indent, f); fprintf(f, ""); fprintf(f, "\n"); ncbiBlastParametersMatrixSave(obj->ncbiBlastParametersMatrix, indent+2, f); ncbiBlastParametersExpectSave(obj->ncbiBlastParametersExpect, indent+2, f); ncbiBlastParametersIncludeSave(obj->ncbiBlastParametersInclude, indent+2, f); ncbiBlastParametersScMatchSave(obj->ncbiBlastParametersScMatch, indent+2, f); ncbiBlastParametersScMismatchSave(obj->ncbiBlastParametersScMismatch, indent+2, f); ncbiBlastParametersGapOpenSave(obj->ncbiBlastParametersGapOpen, indent+2, f); ncbiBlastParametersGapExtendSave(obj->ncbiBlastParametersGapExtend, indent+2, f); ncbiBlastParametersFilterSave(obj->ncbiBlastParametersFilter, indent+2, f); ncbiBlastParametersPatternSave(obj->ncbiBlastParametersPattern, indent+2, f); ncbiBlastParametersEntrezQuerySave(obj->ncbiBlastParametersEntrezQuery, indent+2, f); xapIndent(indent, f); fprintf(f, "\n"); } struct ncbiBlastParameters *ncbiBlastParametersLoad(char *fileName) /* Load ncbiBlastParameters from XML file where it is root element. */ { struct ncbiBlastParameters *obj; xapParseAny(fileName, "Parameters", ncbiBlastStartHandler, ncbiBlastEndHandler, NULL, &obj); return obj; } struct ncbiBlastParameters *ncbiBlastParametersLoadNext(struct xap *xap) /* Load next ncbiBlastParameters element. Use xapOpen to get xap. */ { return xapNext(xap, "Parameters"); } void ncbiBlastParametersMatrixFree(struct ncbiBlastParametersMatrix **pObj) /* Free up ncbiBlastParametersMatrix. */ { struct ncbiBlastParametersMatrix *obj = *pObj; if (obj == NULL) return; freeMem(obj->text); freez(pObj); } void ncbiBlastParametersMatrixFreeList(struct ncbiBlastParametersMatrix **pList) /* Free up list of ncbiBlastParametersMatrix. */ { struct ncbiBlastParametersMatrix *el, *next; for (el = *pList; el != NULL; el = next) { next = el->next; ncbiBlastParametersMatrixFree(&el); el = next; } } void ncbiBlastParametersMatrixSave(struct ncbiBlastParametersMatrix *obj, int indent, FILE *f) /* Save ncbiBlastParametersMatrix to file. */ { if (obj == NULL) return; xapIndent(indent, f); fprintf(f, ""); fprintf(f, "%s", obj->text); fprintf(f, "\n"); } struct ncbiBlastParametersMatrix *ncbiBlastParametersMatrixLoad(char *fileName) /* Load ncbiBlastParametersMatrix from XML file where it is root element. */ { struct ncbiBlastParametersMatrix *obj; xapParseAny(fileName, "Parameters_matrix", ncbiBlastStartHandler, ncbiBlastEndHandler, NULL, &obj); return obj; } struct ncbiBlastParametersMatrix *ncbiBlastParametersMatrixLoadNext(struct xap *xap) /* Load next ncbiBlastParametersMatrix element. Use xapOpen to get xap. */ { return xapNext(xap, "Parameters_matrix"); } void ncbiBlastParametersExpectFree(struct ncbiBlastParametersExpect **pObj) /* Free up ncbiBlastParametersExpect. */ { struct ncbiBlastParametersExpect *obj = *pObj; if (obj == NULL) return; freez(pObj); } void ncbiBlastParametersExpectFreeList(struct ncbiBlastParametersExpect **pList) /* Free up list of ncbiBlastParametersExpect. */ { struct ncbiBlastParametersExpect *el, *next; for (el = *pList; el != NULL; el = next) { next = el->next; ncbiBlastParametersExpectFree(&el); el = next; } } void ncbiBlastParametersExpectSave(struct ncbiBlastParametersExpect *obj, int indent, FILE *f) /* Save ncbiBlastParametersExpect to file. */ { if (obj == NULL) return; xapIndent(indent, f); fprintf(f, ""); fprintf(f, "%f", obj->text); fprintf(f, "\n"); } struct ncbiBlastParametersExpect *ncbiBlastParametersExpectLoad(char *fileName) /* Load ncbiBlastParametersExpect from XML file where it is root element. */ { struct ncbiBlastParametersExpect *obj; xapParseAny(fileName, "Parameters_expect", ncbiBlastStartHandler, ncbiBlastEndHandler, NULL, &obj); return obj; } struct ncbiBlastParametersExpect *ncbiBlastParametersExpectLoadNext(struct xap *xap) /* Load next ncbiBlastParametersExpect element. Use xapOpen to get xap. */ { return xapNext(xap, "Parameters_expect"); } void ncbiBlastParametersIncludeFree(struct ncbiBlastParametersInclude **pObj) /* Free up ncbiBlastParametersInclude. */ { struct ncbiBlastParametersInclude *obj = *pObj; if (obj == NULL) return; freez(pObj); } void ncbiBlastParametersIncludeFreeList(struct ncbiBlastParametersInclude **pList) /* Free up list of ncbiBlastParametersInclude. */ { struct ncbiBlastParametersInclude *el, *next; for (el = *pList; el != NULL; el = next) { next = el->next; ncbiBlastParametersIncludeFree(&el); el = next; } } void ncbiBlastParametersIncludeSave(struct ncbiBlastParametersInclude *obj, int indent, FILE *f) /* Save ncbiBlastParametersInclude to file. */ { if (obj == NULL) return; xapIndent(indent, f); fprintf(f, ""); fprintf(f, "%f", obj->text); fprintf(f, "\n"); } struct ncbiBlastParametersInclude *ncbiBlastParametersIncludeLoad(char *fileName) /* Load ncbiBlastParametersInclude from XML file where it is root element. */ { struct ncbiBlastParametersInclude *obj; xapParseAny(fileName, "Parameters_include", ncbiBlastStartHandler, ncbiBlastEndHandler, NULL, &obj); return obj; } struct ncbiBlastParametersInclude *ncbiBlastParametersIncludeLoadNext(struct xap *xap) /* Load next ncbiBlastParametersInclude element. Use xapOpen to get xap. */ { return xapNext(xap, "Parameters_include"); } void ncbiBlastParametersScMatchFree(struct ncbiBlastParametersScMatch **pObj) /* Free up ncbiBlastParametersScMatch. */ { struct ncbiBlastParametersScMatch *obj = *pObj; if (obj == NULL) return; freez(pObj); } void ncbiBlastParametersScMatchFreeList(struct ncbiBlastParametersScMatch **pList) /* Free up list of ncbiBlastParametersScMatch. */ { struct ncbiBlastParametersScMatch *el, *next; for (el = *pList; el != NULL; el = next) { next = el->next; ncbiBlastParametersScMatchFree(&el); el = next; } } void ncbiBlastParametersScMatchSave(struct ncbiBlastParametersScMatch *obj, int indent, FILE *f) /* Save ncbiBlastParametersScMatch to file. */ { if (obj == NULL) return; xapIndent(indent, f); fprintf(f, ""); fprintf(f, "%d", obj->text); fprintf(f, "\n"); } struct ncbiBlastParametersScMatch *ncbiBlastParametersScMatchLoad(char *fileName) /* Load ncbiBlastParametersScMatch from XML file where it is root element. */ { struct ncbiBlastParametersScMatch *obj; xapParseAny(fileName, "Parameters_sc-match", ncbiBlastStartHandler, ncbiBlastEndHandler, NULL, &obj); return obj; } struct ncbiBlastParametersScMatch *ncbiBlastParametersScMatchLoadNext(struct xap *xap) /* Load next ncbiBlastParametersScMatch element. Use xapOpen to get xap. */ { return xapNext(xap, "Parameters_sc-match"); } void ncbiBlastParametersScMismatchFree(struct ncbiBlastParametersScMismatch **pObj) /* Free up ncbiBlastParametersScMismatch. */ { struct ncbiBlastParametersScMismatch *obj = *pObj; if (obj == NULL) return; freez(pObj); } void ncbiBlastParametersScMismatchFreeList(struct ncbiBlastParametersScMismatch **pList) /* Free up list of ncbiBlastParametersScMismatch. */ { struct ncbiBlastParametersScMismatch *el, *next; for (el = *pList; el != NULL; el = next) { next = el->next; ncbiBlastParametersScMismatchFree(&el); el = next; } } void ncbiBlastParametersScMismatchSave(struct ncbiBlastParametersScMismatch *obj, int indent, FILE *f) /* Save ncbiBlastParametersScMismatch to file. */ { if (obj == NULL) return; xapIndent(indent, f); fprintf(f, ""); fprintf(f, "%d", obj->text); fprintf(f, "\n"); } struct ncbiBlastParametersScMismatch *ncbiBlastParametersScMismatchLoad(char *fileName) /* Load ncbiBlastParametersScMismatch from XML file where it is root element. */ { struct ncbiBlastParametersScMismatch *obj; xapParseAny(fileName, "Parameters_sc-mismatch", ncbiBlastStartHandler, ncbiBlastEndHandler, NULL, &obj); return obj; } struct ncbiBlastParametersScMismatch *ncbiBlastParametersScMismatchLoadNext(struct xap *xap) /* Load next ncbiBlastParametersScMismatch element. Use xapOpen to get xap. */ { return xapNext(xap, "Parameters_sc-mismatch"); } void ncbiBlastParametersGapOpenFree(struct ncbiBlastParametersGapOpen **pObj) /* Free up ncbiBlastParametersGapOpen. */ { struct ncbiBlastParametersGapOpen *obj = *pObj; if (obj == NULL) return; freez(pObj); } void ncbiBlastParametersGapOpenFreeList(struct ncbiBlastParametersGapOpen **pList) /* Free up list of ncbiBlastParametersGapOpen. */ { struct ncbiBlastParametersGapOpen *el, *next; for (el = *pList; el != NULL; el = next) { next = el->next; ncbiBlastParametersGapOpenFree(&el); el = next; } } void ncbiBlastParametersGapOpenSave(struct ncbiBlastParametersGapOpen *obj, int indent, FILE *f) /* Save ncbiBlastParametersGapOpen to file. */ { if (obj == NULL) return; xapIndent(indent, f); fprintf(f, ""); fprintf(f, "%d", obj->text); fprintf(f, "\n"); } struct ncbiBlastParametersGapOpen *ncbiBlastParametersGapOpenLoad(char *fileName) /* Load ncbiBlastParametersGapOpen from XML file where it is root element. */ { struct ncbiBlastParametersGapOpen *obj; xapParseAny(fileName, "Parameters_gap-open", ncbiBlastStartHandler, ncbiBlastEndHandler, NULL, &obj); return obj; } struct ncbiBlastParametersGapOpen *ncbiBlastParametersGapOpenLoadNext(struct xap *xap) /* Load next ncbiBlastParametersGapOpen element. Use xapOpen to get xap. */ { return xapNext(xap, "Parameters_gap-open"); } void ncbiBlastParametersGapExtendFree(struct ncbiBlastParametersGapExtend **pObj) /* Free up ncbiBlastParametersGapExtend. */ { struct ncbiBlastParametersGapExtend *obj = *pObj; if (obj == NULL) return; freez(pObj); } void ncbiBlastParametersGapExtendFreeList(struct ncbiBlastParametersGapExtend **pList) /* Free up list of ncbiBlastParametersGapExtend. */ { struct ncbiBlastParametersGapExtend *el, *next; for (el = *pList; el != NULL; el = next) { next = el->next; ncbiBlastParametersGapExtendFree(&el); el = next; } } void ncbiBlastParametersGapExtendSave(struct ncbiBlastParametersGapExtend *obj, int indent, FILE *f) /* Save ncbiBlastParametersGapExtend to file. */ { if (obj == NULL) return; xapIndent(indent, f); fprintf(f, ""); fprintf(f, "%d", obj->text); fprintf(f, "\n"); } struct ncbiBlastParametersGapExtend *ncbiBlastParametersGapExtendLoad(char *fileName) /* Load ncbiBlastParametersGapExtend from XML file where it is root element. */ { struct ncbiBlastParametersGapExtend *obj; xapParseAny(fileName, "Parameters_gap-extend", ncbiBlastStartHandler, ncbiBlastEndHandler, NULL, &obj); return obj; } struct ncbiBlastParametersGapExtend *ncbiBlastParametersGapExtendLoadNext(struct xap *xap) /* Load next ncbiBlastParametersGapExtend element. Use xapOpen to get xap. */ { return xapNext(xap, "Parameters_gap-extend"); } void ncbiBlastParametersFilterFree(struct ncbiBlastParametersFilter **pObj) /* Free up ncbiBlastParametersFilter. */ { struct ncbiBlastParametersFilter *obj = *pObj; if (obj == NULL) return; freeMem(obj->text); freez(pObj); } void ncbiBlastParametersFilterFreeList(struct ncbiBlastParametersFilter **pList) /* Free up list of ncbiBlastParametersFilter. */ { struct ncbiBlastParametersFilter *el, *next; for (el = *pList; el != NULL; el = next) { next = el->next; ncbiBlastParametersFilterFree(&el); el = next; } } void ncbiBlastParametersFilterSave(struct ncbiBlastParametersFilter *obj, int indent, FILE *f) /* Save ncbiBlastParametersFilter to file. */ { if (obj == NULL) return; xapIndent(indent, f); fprintf(f, ""); fprintf(f, "%s", obj->text); fprintf(f, "\n"); } struct ncbiBlastParametersFilter *ncbiBlastParametersFilterLoad(char *fileName) /* Load ncbiBlastParametersFilter from XML file where it is root element. */ { struct ncbiBlastParametersFilter *obj; xapParseAny(fileName, "Parameters_filter", ncbiBlastStartHandler, ncbiBlastEndHandler, NULL, &obj); return obj; } struct ncbiBlastParametersFilter *ncbiBlastParametersFilterLoadNext(struct xap *xap) /* Load next ncbiBlastParametersFilter element. Use xapOpen to get xap. */ { return xapNext(xap, "Parameters_filter"); } void ncbiBlastParametersPatternFree(struct ncbiBlastParametersPattern **pObj) /* Free up ncbiBlastParametersPattern. */ { struct ncbiBlastParametersPattern *obj = *pObj; if (obj == NULL) return; freeMem(obj->text); freez(pObj); } void ncbiBlastParametersPatternFreeList(struct ncbiBlastParametersPattern **pList) /* Free up list of ncbiBlastParametersPattern. */ { struct ncbiBlastParametersPattern *el, *next; for (el = *pList; el != NULL; el = next) { next = el->next; ncbiBlastParametersPatternFree(&el); el = next; } } void ncbiBlastParametersPatternSave(struct ncbiBlastParametersPattern *obj, int indent, FILE *f) /* Save ncbiBlastParametersPattern to file. */ { if (obj == NULL) return; xapIndent(indent, f); fprintf(f, ""); fprintf(f, "%s", obj->text); fprintf(f, "\n"); } struct ncbiBlastParametersPattern *ncbiBlastParametersPatternLoad(char *fileName) /* Load ncbiBlastParametersPattern from XML file where it is root element. */ { struct ncbiBlastParametersPattern *obj; xapParseAny(fileName, "Parameters_pattern", ncbiBlastStartHandler, ncbiBlastEndHandler, NULL, &obj); return obj; } struct ncbiBlastParametersPattern *ncbiBlastParametersPatternLoadNext(struct xap *xap) /* Load next ncbiBlastParametersPattern element. Use xapOpen to get xap. */ { return xapNext(xap, "Parameters_pattern"); } void ncbiBlastParametersEntrezQueryFree(struct ncbiBlastParametersEntrezQuery **pObj) /* Free up ncbiBlastParametersEntrezQuery. */ { struct ncbiBlastParametersEntrezQuery *obj = *pObj; if (obj == NULL) return; freeMem(obj->text); freez(pObj); } void ncbiBlastParametersEntrezQueryFreeList(struct ncbiBlastParametersEntrezQuery **pList) /* Free up list of ncbiBlastParametersEntrezQuery. */ { struct ncbiBlastParametersEntrezQuery *el, *next; for (el = *pList; el != NULL; el = next) { next = el->next; ncbiBlastParametersEntrezQueryFree(&el); el = next; } } void ncbiBlastParametersEntrezQuerySave(struct ncbiBlastParametersEntrezQuery *obj, int indent, FILE *f) /* Save ncbiBlastParametersEntrezQuery to file. */ { if (obj == NULL) return; xapIndent(indent, f); fprintf(f, ""); fprintf(f, "%s", obj->text); fprintf(f, "\n"); } struct ncbiBlastParametersEntrezQuery *ncbiBlastParametersEntrezQueryLoad(char *fileName) /* Load ncbiBlastParametersEntrezQuery from XML file where it is root element. */ { struct ncbiBlastParametersEntrezQuery *obj; xapParseAny(fileName, "Parameters_entrez-query", ncbiBlastStartHandler, ncbiBlastEndHandler, NULL, &obj); return obj; } struct ncbiBlastParametersEntrezQuery *ncbiBlastParametersEntrezQueryLoadNext(struct xap *xap) /* Load next ncbiBlastParametersEntrezQuery element. Use xapOpen to get xap. */ { return xapNext(xap, "Parameters_entrez-query"); } void ncbiBlastStatisticsFree(struct ncbiBlastStatistics **pObj) /* Free up ncbiBlastStatistics. */ { struct ncbiBlastStatistics *obj = *pObj; if (obj == NULL) return; ncbiBlastStatisticsDbNumFree(&obj->ncbiBlastStatisticsDbNum); ncbiBlastStatisticsDbLenFree(&obj->ncbiBlastStatisticsDbLen); ncbiBlastStatisticsHspLenFree(&obj->ncbiBlastStatisticsHspLen); ncbiBlastStatisticsEffSpaceFree(&obj->ncbiBlastStatisticsEffSpace); ncbiBlastStatisticsKappaFree(&obj->ncbiBlastStatisticsKappa); ncbiBlastStatisticsLambdaFree(&obj->ncbiBlastStatisticsLambda); ncbiBlastStatisticsEntropyFree(&obj->ncbiBlastStatisticsEntropy); freez(pObj); } void ncbiBlastStatisticsFreeList(struct ncbiBlastStatistics **pList) /* Free up list of ncbiBlastStatistics. */ { struct ncbiBlastStatistics *el, *next; for (el = *pList; el != NULL; el = next) { next = el->next; ncbiBlastStatisticsFree(&el); el = next; } } void ncbiBlastStatisticsSave(struct ncbiBlastStatistics *obj, int indent, FILE *f) /* Save ncbiBlastStatistics to file. */ { if (obj == NULL) return; xapIndent(indent, f); fprintf(f, ""); fprintf(f, "\n"); ncbiBlastStatisticsDbNumSave(obj->ncbiBlastStatisticsDbNum, indent+2, f); ncbiBlastStatisticsDbLenSave(obj->ncbiBlastStatisticsDbLen, indent+2, f); ncbiBlastStatisticsHspLenSave(obj->ncbiBlastStatisticsHspLen, indent+2, f); ncbiBlastStatisticsEffSpaceSave(obj->ncbiBlastStatisticsEffSpace, indent+2, f); ncbiBlastStatisticsKappaSave(obj->ncbiBlastStatisticsKappa, indent+2, f); ncbiBlastStatisticsLambdaSave(obj->ncbiBlastStatisticsLambda, indent+2, f); ncbiBlastStatisticsEntropySave(obj->ncbiBlastStatisticsEntropy, indent+2, f); xapIndent(indent, f); fprintf(f, "\n"); } struct ncbiBlastStatistics *ncbiBlastStatisticsLoad(char *fileName) /* Load ncbiBlastStatistics from XML file where it is root element. */ { struct ncbiBlastStatistics *obj; xapParseAny(fileName, "Statistics", ncbiBlastStartHandler, ncbiBlastEndHandler, NULL, &obj); return obj; } struct ncbiBlastStatistics *ncbiBlastStatisticsLoadNext(struct xap *xap) /* Load next ncbiBlastStatistics element. Use xapOpen to get xap. */ { return xapNext(xap, "Statistics"); } void ncbiBlastStatisticsDbNumFree(struct ncbiBlastStatisticsDbNum **pObj) /* Free up ncbiBlastStatisticsDbNum. */ { struct ncbiBlastStatisticsDbNum *obj = *pObj; if (obj == NULL) return; freez(pObj); } void ncbiBlastStatisticsDbNumFreeList(struct ncbiBlastStatisticsDbNum **pList) /* Free up list of ncbiBlastStatisticsDbNum. */ { struct ncbiBlastStatisticsDbNum *el, *next; for (el = *pList; el != NULL; el = next) { next = el->next; ncbiBlastStatisticsDbNumFree(&el); el = next; } } void ncbiBlastStatisticsDbNumSave(struct ncbiBlastStatisticsDbNum *obj, int indent, FILE *f) /* Save ncbiBlastStatisticsDbNum to file. */ { if (obj == NULL) return; xapIndent(indent, f); fprintf(f, ""); fprintf(f, "%d", obj->text); fprintf(f, "\n"); } struct ncbiBlastStatisticsDbNum *ncbiBlastStatisticsDbNumLoad(char *fileName) /* Load ncbiBlastStatisticsDbNum from XML file where it is root element. */ { struct ncbiBlastStatisticsDbNum *obj; xapParseAny(fileName, "Statistics_db-num", ncbiBlastStartHandler, ncbiBlastEndHandler, NULL, &obj); return obj; } struct ncbiBlastStatisticsDbNum *ncbiBlastStatisticsDbNumLoadNext(struct xap *xap) /* Load next ncbiBlastStatisticsDbNum element. Use xapOpen to get xap. */ { return xapNext(xap, "Statistics_db-num"); } void ncbiBlastStatisticsDbLenFree(struct ncbiBlastStatisticsDbLen **pObj) /* Free up ncbiBlastStatisticsDbLen. */ { struct ncbiBlastStatisticsDbLen *obj = *pObj; if (obj == NULL) return; freez(pObj); } void ncbiBlastStatisticsDbLenFreeList(struct ncbiBlastStatisticsDbLen **pList) /* Free up list of ncbiBlastStatisticsDbLen. */ { struct ncbiBlastStatisticsDbLen *el, *next; for (el = *pList; el != NULL; el = next) { next = el->next; ncbiBlastStatisticsDbLenFree(&el); el = next; } } void ncbiBlastStatisticsDbLenSave(struct ncbiBlastStatisticsDbLen *obj, int indent, FILE *f) /* Save ncbiBlastStatisticsDbLen to file. */ { if (obj == NULL) return; xapIndent(indent, f); fprintf(f, ""); fprintf(f, "%d", obj->text); fprintf(f, "\n"); } struct ncbiBlastStatisticsDbLen *ncbiBlastStatisticsDbLenLoad(char *fileName) /* Load ncbiBlastStatisticsDbLen from XML file where it is root element. */ { struct ncbiBlastStatisticsDbLen *obj; xapParseAny(fileName, "Statistics_db-len", ncbiBlastStartHandler, ncbiBlastEndHandler, NULL, &obj); return obj; } struct ncbiBlastStatisticsDbLen *ncbiBlastStatisticsDbLenLoadNext(struct xap *xap) /* Load next ncbiBlastStatisticsDbLen element. Use xapOpen to get xap. */ { return xapNext(xap, "Statistics_db-len"); } void ncbiBlastStatisticsHspLenFree(struct ncbiBlastStatisticsHspLen **pObj) /* Free up ncbiBlastStatisticsHspLen. */ { struct ncbiBlastStatisticsHspLen *obj = *pObj; if (obj == NULL) return; freez(pObj); } void ncbiBlastStatisticsHspLenFreeList(struct ncbiBlastStatisticsHspLen **pList) /* Free up list of ncbiBlastStatisticsHspLen. */ { struct ncbiBlastStatisticsHspLen *el, *next; for (el = *pList; el != NULL; el = next) { next = el->next; ncbiBlastStatisticsHspLenFree(&el); el = next; } } void ncbiBlastStatisticsHspLenSave(struct ncbiBlastStatisticsHspLen *obj, int indent, FILE *f) /* Save ncbiBlastStatisticsHspLen to file. */ { if (obj == NULL) return; xapIndent(indent, f); fprintf(f, ""); fprintf(f, "%d", obj->text); fprintf(f, "\n"); } struct ncbiBlastStatisticsHspLen *ncbiBlastStatisticsHspLenLoad(char *fileName) /* Load ncbiBlastStatisticsHspLen from XML file where it is root element. */ { struct ncbiBlastStatisticsHspLen *obj; xapParseAny(fileName, "Statistics_hsp-len", ncbiBlastStartHandler, ncbiBlastEndHandler, NULL, &obj); return obj; } struct ncbiBlastStatisticsHspLen *ncbiBlastStatisticsHspLenLoadNext(struct xap *xap) /* Load next ncbiBlastStatisticsHspLen element. Use xapOpen to get xap. */ { return xapNext(xap, "Statistics_hsp-len"); } void ncbiBlastStatisticsEffSpaceFree(struct ncbiBlastStatisticsEffSpace **pObj) /* Free up ncbiBlastStatisticsEffSpace. */ { struct ncbiBlastStatisticsEffSpace *obj = *pObj; if (obj == NULL) return; freez(pObj); } void ncbiBlastStatisticsEffSpaceFreeList(struct ncbiBlastStatisticsEffSpace **pList) /* Free up list of ncbiBlastStatisticsEffSpace. */ { struct ncbiBlastStatisticsEffSpace *el, *next; for (el = *pList; el != NULL; el = next) { next = el->next; ncbiBlastStatisticsEffSpaceFree(&el); el = next; } } void ncbiBlastStatisticsEffSpaceSave(struct ncbiBlastStatisticsEffSpace *obj, int indent, FILE *f) /* Save ncbiBlastStatisticsEffSpace to file. */ { if (obj == NULL) return; xapIndent(indent, f); fprintf(f, ""); fprintf(f, "%f", obj->text); fprintf(f, "\n"); } struct ncbiBlastStatisticsEffSpace *ncbiBlastStatisticsEffSpaceLoad(char *fileName) /* Load ncbiBlastStatisticsEffSpace from XML file where it is root element. */ { struct ncbiBlastStatisticsEffSpace *obj; xapParseAny(fileName, "Statistics_eff-space", ncbiBlastStartHandler, ncbiBlastEndHandler, NULL, &obj); return obj; } struct ncbiBlastStatisticsEffSpace *ncbiBlastStatisticsEffSpaceLoadNext(struct xap *xap) /* Load next ncbiBlastStatisticsEffSpace element. Use xapOpen to get xap. */ { return xapNext(xap, "Statistics_eff-space"); } void ncbiBlastStatisticsKappaFree(struct ncbiBlastStatisticsKappa **pObj) /* Free up ncbiBlastStatisticsKappa. */ { struct ncbiBlastStatisticsKappa *obj = *pObj; if (obj == NULL) return; freez(pObj); } void ncbiBlastStatisticsKappaFreeList(struct ncbiBlastStatisticsKappa **pList) /* Free up list of ncbiBlastStatisticsKappa. */ { struct ncbiBlastStatisticsKappa *el, *next; for (el = *pList; el != NULL; el = next) { next = el->next; ncbiBlastStatisticsKappaFree(&el); el = next; } } void ncbiBlastStatisticsKappaSave(struct ncbiBlastStatisticsKappa *obj, int indent, FILE *f) /* Save ncbiBlastStatisticsKappa to file. */ { if (obj == NULL) return; xapIndent(indent, f); fprintf(f, ""); fprintf(f, "%f", obj->text); fprintf(f, "\n"); } struct ncbiBlastStatisticsKappa *ncbiBlastStatisticsKappaLoad(char *fileName) /* Load ncbiBlastStatisticsKappa from XML file where it is root element. */ { struct ncbiBlastStatisticsKappa *obj; xapParseAny(fileName, "Statistics_kappa", ncbiBlastStartHandler, ncbiBlastEndHandler, NULL, &obj); return obj; } struct ncbiBlastStatisticsKappa *ncbiBlastStatisticsKappaLoadNext(struct xap *xap) /* Load next ncbiBlastStatisticsKappa element. Use xapOpen to get xap. */ { return xapNext(xap, "Statistics_kappa"); } void ncbiBlastStatisticsLambdaFree(struct ncbiBlastStatisticsLambda **pObj) /* Free up ncbiBlastStatisticsLambda. */ { struct ncbiBlastStatisticsLambda *obj = *pObj; if (obj == NULL) return; freez(pObj); } void ncbiBlastStatisticsLambdaFreeList(struct ncbiBlastStatisticsLambda **pList) /* Free up list of ncbiBlastStatisticsLambda. */ { struct ncbiBlastStatisticsLambda *el, *next; for (el = *pList; el != NULL; el = next) { next = el->next; ncbiBlastStatisticsLambdaFree(&el); el = next; } } void ncbiBlastStatisticsLambdaSave(struct ncbiBlastStatisticsLambda *obj, int indent, FILE *f) /* Save ncbiBlastStatisticsLambda to file. */ { if (obj == NULL) return; xapIndent(indent, f); fprintf(f, ""); fprintf(f, "%f", obj->text); fprintf(f, "\n"); } struct ncbiBlastStatisticsLambda *ncbiBlastStatisticsLambdaLoad(char *fileName) /* Load ncbiBlastStatisticsLambda from XML file where it is root element. */ { struct ncbiBlastStatisticsLambda *obj; xapParseAny(fileName, "Statistics_lambda", ncbiBlastStartHandler, ncbiBlastEndHandler, NULL, &obj); return obj; } struct ncbiBlastStatisticsLambda *ncbiBlastStatisticsLambdaLoadNext(struct xap *xap) /* Load next ncbiBlastStatisticsLambda element. Use xapOpen to get xap. */ { return xapNext(xap, "Statistics_lambda"); } void ncbiBlastStatisticsEntropyFree(struct ncbiBlastStatisticsEntropy **pObj) /* Free up ncbiBlastStatisticsEntropy. */ { struct ncbiBlastStatisticsEntropy *obj = *pObj; if (obj == NULL) return; freez(pObj); } void ncbiBlastStatisticsEntropyFreeList(struct ncbiBlastStatisticsEntropy **pList) /* Free up list of ncbiBlastStatisticsEntropy. */ { struct ncbiBlastStatisticsEntropy *el, *next; for (el = *pList; el != NULL; el = next) { next = el->next; ncbiBlastStatisticsEntropyFree(&el); el = next; } } void ncbiBlastStatisticsEntropySave(struct ncbiBlastStatisticsEntropy *obj, int indent, FILE *f) /* Save ncbiBlastStatisticsEntropy to file. */ { if (obj == NULL) return; xapIndent(indent, f); fprintf(f, ""); fprintf(f, "%f", obj->text); fprintf(f, "\n"); } struct ncbiBlastStatisticsEntropy *ncbiBlastStatisticsEntropyLoad(char *fileName) /* Load ncbiBlastStatisticsEntropy from XML file where it is root element. */ { struct ncbiBlastStatisticsEntropy *obj; xapParseAny(fileName, "Statistics_entropy", ncbiBlastStartHandler, ncbiBlastEndHandler, NULL, &obj); return obj; } struct ncbiBlastStatisticsEntropy *ncbiBlastStatisticsEntropyLoadNext(struct xap *xap) /* Load next ncbiBlastStatisticsEntropy element. Use xapOpen to get xap. */ { return xapNext(xap, "Statistics_entropy"); } void ncbiBlastHitFree(struct ncbiBlastHit **pObj) /* Free up ncbiBlastHit. */ { struct ncbiBlastHit *obj = *pObj; if (obj == NULL) return; ncbiBlastHitNumFree(&obj->ncbiBlastHitNum); ncbiBlastHitIdFree(&obj->ncbiBlastHitId); ncbiBlastHitDefFree(&obj->ncbiBlastHitDef); ncbiBlastHitAccessionFree(&obj->ncbiBlastHitAccession); ncbiBlastHitLenFree(&obj->ncbiBlastHitLen); ncbiBlastHitHspsFree(&obj->ncbiBlastHitHsps); freez(pObj); } void ncbiBlastHitFreeList(struct ncbiBlastHit **pList) /* Free up list of ncbiBlastHit. */ { struct ncbiBlastHit *el, *next; for (el = *pList; el != NULL; el = next) { next = el->next; ncbiBlastHitFree(&el); el = next; } } void ncbiBlastHitSave(struct ncbiBlastHit *obj, int indent, FILE *f) /* Save ncbiBlastHit to file. */ { if (obj == NULL) return; xapIndent(indent, f); fprintf(f, ""); fprintf(f, "\n"); ncbiBlastHitNumSave(obj->ncbiBlastHitNum, indent+2, f); ncbiBlastHitIdSave(obj->ncbiBlastHitId, indent+2, f); ncbiBlastHitDefSave(obj->ncbiBlastHitDef, indent+2, f); ncbiBlastHitAccessionSave(obj->ncbiBlastHitAccession, indent+2, f); ncbiBlastHitLenSave(obj->ncbiBlastHitLen, indent+2, f); ncbiBlastHitHspsSave(obj->ncbiBlastHitHsps, indent+2, f); xapIndent(indent, f); fprintf(f, "\n"); } struct ncbiBlastHit *ncbiBlastHitLoad(char *fileName) /* Load ncbiBlastHit from XML file where it is root element. */ { struct ncbiBlastHit *obj; xapParseAny(fileName, "Hit", ncbiBlastStartHandler, ncbiBlastEndHandler, NULL, &obj); return obj; } struct ncbiBlastHit *ncbiBlastHitLoadNext(struct xap *xap) /* Load next ncbiBlastHit element. Use xapOpen to get xap. */ { return xapNext(xap, "Hit"); } void ncbiBlastHitNumFree(struct ncbiBlastHitNum **pObj) /* Free up ncbiBlastHitNum. */ { struct ncbiBlastHitNum *obj = *pObj; if (obj == NULL) return; freez(pObj); } void ncbiBlastHitNumFreeList(struct ncbiBlastHitNum **pList) /* Free up list of ncbiBlastHitNum. */ { struct ncbiBlastHitNum *el, *next; for (el = *pList; el != NULL; el = next) { next = el->next; ncbiBlastHitNumFree(&el); el = next; } } void ncbiBlastHitNumSave(struct ncbiBlastHitNum *obj, int indent, FILE *f) /* Save ncbiBlastHitNum to file. */ { if (obj == NULL) return; xapIndent(indent, f); fprintf(f, ""); fprintf(f, "%d", obj->text); fprintf(f, "\n"); } struct ncbiBlastHitNum *ncbiBlastHitNumLoad(char *fileName) /* Load ncbiBlastHitNum from XML file where it is root element. */ { struct ncbiBlastHitNum *obj; xapParseAny(fileName, "Hit_num", ncbiBlastStartHandler, ncbiBlastEndHandler, NULL, &obj); return obj; } struct ncbiBlastHitNum *ncbiBlastHitNumLoadNext(struct xap *xap) /* Load next ncbiBlastHitNum element. Use xapOpen to get xap. */ { return xapNext(xap, "Hit_num"); } void ncbiBlastHitIdFree(struct ncbiBlastHitId **pObj) /* Free up ncbiBlastHitId. */ { struct ncbiBlastHitId *obj = *pObj; if (obj == NULL) return; freeMem(obj->text); freez(pObj); } void ncbiBlastHitIdFreeList(struct ncbiBlastHitId **pList) /* Free up list of ncbiBlastHitId. */ { struct ncbiBlastHitId *el, *next; for (el = *pList; el != NULL; el = next) { next = el->next; ncbiBlastHitIdFree(&el); el = next; } } void ncbiBlastHitIdSave(struct ncbiBlastHitId *obj, int indent, FILE *f) /* Save ncbiBlastHitId to file. */ { if (obj == NULL) return; xapIndent(indent, f); fprintf(f, ""); fprintf(f, "%s", obj->text); fprintf(f, "\n"); } struct ncbiBlastHitId *ncbiBlastHitIdLoad(char *fileName) /* Load ncbiBlastHitId from XML file where it is root element. */ { struct ncbiBlastHitId *obj; xapParseAny(fileName, "Hit_id", ncbiBlastStartHandler, ncbiBlastEndHandler, NULL, &obj); return obj; } struct ncbiBlastHitId *ncbiBlastHitIdLoadNext(struct xap *xap) /* Load next ncbiBlastHitId element. Use xapOpen to get xap. */ { return xapNext(xap, "Hit_id"); } void ncbiBlastHitDefFree(struct ncbiBlastHitDef **pObj) /* Free up ncbiBlastHitDef. */ { struct ncbiBlastHitDef *obj = *pObj; if (obj == NULL) return; freeMem(obj->text); freez(pObj); } void ncbiBlastHitDefFreeList(struct ncbiBlastHitDef **pList) /* Free up list of ncbiBlastHitDef. */ { struct ncbiBlastHitDef *el, *next; for (el = *pList; el != NULL; el = next) { next = el->next; ncbiBlastHitDefFree(&el); el = next; } } void ncbiBlastHitDefSave(struct ncbiBlastHitDef *obj, int indent, FILE *f) /* Save ncbiBlastHitDef to file. */ { if (obj == NULL) return; xapIndent(indent, f); fprintf(f, ""); fprintf(f, "%s", obj->text); fprintf(f, "\n"); } struct ncbiBlastHitDef *ncbiBlastHitDefLoad(char *fileName) /* Load ncbiBlastHitDef from XML file where it is root element. */ { struct ncbiBlastHitDef *obj; xapParseAny(fileName, "Hit_def", ncbiBlastStartHandler, ncbiBlastEndHandler, NULL, &obj); return obj; } struct ncbiBlastHitDef *ncbiBlastHitDefLoadNext(struct xap *xap) /* Load next ncbiBlastHitDef element. Use xapOpen to get xap. */ { return xapNext(xap, "Hit_def"); } void ncbiBlastHitAccessionFree(struct ncbiBlastHitAccession **pObj) /* Free up ncbiBlastHitAccession. */ { struct ncbiBlastHitAccession *obj = *pObj; if (obj == NULL) return; freeMem(obj->text); freez(pObj); } void ncbiBlastHitAccessionFreeList(struct ncbiBlastHitAccession **pList) /* Free up list of ncbiBlastHitAccession. */ { struct ncbiBlastHitAccession *el, *next; for (el = *pList; el != NULL; el = next) { next = el->next; ncbiBlastHitAccessionFree(&el); el = next; } } void ncbiBlastHitAccessionSave(struct ncbiBlastHitAccession *obj, int indent, FILE *f) /* Save ncbiBlastHitAccession to file. */ { if (obj == NULL) return; xapIndent(indent, f); fprintf(f, ""); fprintf(f, "%s", obj->text); fprintf(f, "\n"); } struct ncbiBlastHitAccession *ncbiBlastHitAccessionLoad(char *fileName) /* Load ncbiBlastHitAccession from XML file where it is root element. */ { struct ncbiBlastHitAccession *obj; xapParseAny(fileName, "Hit_accession", ncbiBlastStartHandler, ncbiBlastEndHandler, NULL, &obj); return obj; } struct ncbiBlastHitAccession *ncbiBlastHitAccessionLoadNext(struct xap *xap) /* Load next ncbiBlastHitAccession element. Use xapOpen to get xap. */ { return xapNext(xap, "Hit_accession"); } void ncbiBlastHitLenFree(struct ncbiBlastHitLen **pObj) /* Free up ncbiBlastHitLen. */ { struct ncbiBlastHitLen *obj = *pObj; if (obj == NULL) return; freez(pObj); } void ncbiBlastHitLenFreeList(struct ncbiBlastHitLen **pList) /* Free up list of ncbiBlastHitLen. */ { struct ncbiBlastHitLen *el, *next; for (el = *pList; el != NULL; el = next) { next = el->next; ncbiBlastHitLenFree(&el); el = next; } } void ncbiBlastHitLenSave(struct ncbiBlastHitLen *obj, int indent, FILE *f) /* Save ncbiBlastHitLen to file. */ { if (obj == NULL) return; xapIndent(indent, f); fprintf(f, ""); fprintf(f, "%d", obj->text); fprintf(f, "\n"); } struct ncbiBlastHitLen *ncbiBlastHitLenLoad(char *fileName) /* Load ncbiBlastHitLen from XML file where it is root element. */ { struct ncbiBlastHitLen *obj; xapParseAny(fileName, "Hit_len", ncbiBlastStartHandler, ncbiBlastEndHandler, NULL, &obj); return obj; } struct ncbiBlastHitLen *ncbiBlastHitLenLoadNext(struct xap *xap) /* Load next ncbiBlastHitLen element. Use xapOpen to get xap. */ { return xapNext(xap, "Hit_len"); } void ncbiBlastHitHspsFree(struct ncbiBlastHitHsps **pObj) /* Free up ncbiBlastHitHsps. */ { struct ncbiBlastHitHsps *obj = *pObj; if (obj == NULL) return; ncbiBlastHspFreeList(&obj->ncbiBlastHsp); freez(pObj); } void ncbiBlastHitHspsFreeList(struct ncbiBlastHitHsps **pList) /* Free up list of ncbiBlastHitHsps. */ { struct ncbiBlastHitHsps *el, *next; for (el = *pList; el != NULL; el = next) { next = el->next; ncbiBlastHitHspsFree(&el); el = next; } } void ncbiBlastHitHspsSave(struct ncbiBlastHitHsps *obj, int indent, FILE *f) /* Save ncbiBlastHitHsps to file. */ { struct ncbiBlastHsp *ncbiBlastHsp; boolean isNode = TRUE; if (obj == NULL) return; xapIndent(indent, f); fprintf(f, ""); for (ncbiBlastHsp = obj->ncbiBlastHsp; ncbiBlastHsp != NULL; ncbiBlastHsp = ncbiBlastHsp->next) { if (isNode) { fprintf(f, "\n"); isNode = FALSE; } ncbiBlastHspSave(ncbiBlastHsp, indent+2, f); } if (!isNode) xapIndent(indent, f); fprintf(f, "\n"); } struct ncbiBlastHitHsps *ncbiBlastHitHspsLoad(char *fileName) /* Load ncbiBlastHitHsps from XML file where it is root element. */ { struct ncbiBlastHitHsps *obj; xapParseAny(fileName, "Hit_hsps", ncbiBlastStartHandler, ncbiBlastEndHandler, NULL, &obj); return obj; } struct ncbiBlastHitHsps *ncbiBlastHitHspsLoadNext(struct xap *xap) /* Load next ncbiBlastHitHsps element. Use xapOpen to get xap. */ { return xapNext(xap, "Hit_hsps"); } void ncbiBlastHspFree(struct ncbiBlastHsp **pObj) /* Free up ncbiBlastHsp. */ { struct ncbiBlastHsp *obj = *pObj; if (obj == NULL) return; ncbiBlastHspNumFree(&obj->ncbiBlastHspNum); ncbiBlastHspBitScoreFree(&obj->ncbiBlastHspBitScore); ncbiBlastHspScoreFree(&obj->ncbiBlastHspScore); ncbiBlastHspEvalueFree(&obj->ncbiBlastHspEvalue); ncbiBlastHspQueryFromFree(&obj->ncbiBlastHspQueryFrom); ncbiBlastHspQueryToFree(&obj->ncbiBlastHspQueryTo); ncbiBlastHspHitFromFree(&obj->ncbiBlastHspHitFrom); ncbiBlastHspHitToFree(&obj->ncbiBlastHspHitTo); ncbiBlastHspPatternFromFree(&obj->ncbiBlastHspPatternFrom); ncbiBlastHspPatternToFree(&obj->ncbiBlastHspPatternTo); ncbiBlastHspQueryFrameFree(&obj->ncbiBlastHspQueryFrame); ncbiBlastHspHitFrameFree(&obj->ncbiBlastHspHitFrame); ncbiBlastHspIdentityFree(&obj->ncbiBlastHspIdentity); ncbiBlastHspPositiveFree(&obj->ncbiBlastHspPositive); ncbiBlastHspGapsFree(&obj->ncbiBlastHspGaps); ncbiBlastHspAlignLenFree(&obj->ncbiBlastHspAlignLen); ncbiBlastHspDensityFree(&obj->ncbiBlastHspDensity); ncbiBlastHspQseqFree(&obj->ncbiBlastHspQseq); ncbiBlastHspHseqFree(&obj->ncbiBlastHspHseq); ncbiBlastHspMidlineFree(&obj->ncbiBlastHspMidline); freez(pObj); } void ncbiBlastHspFreeList(struct ncbiBlastHsp **pList) /* Free up list of ncbiBlastHsp. */ { struct ncbiBlastHsp *el, *next; for (el = *pList; el != NULL; el = next) { next = el->next; ncbiBlastHspFree(&el); el = next; } } void ncbiBlastHspSave(struct ncbiBlastHsp *obj, int indent, FILE *f) /* Save ncbiBlastHsp to file. */ { if (obj == NULL) return; xapIndent(indent, f); fprintf(f, ""); fprintf(f, "\n"); ncbiBlastHspNumSave(obj->ncbiBlastHspNum, indent+2, f); ncbiBlastHspBitScoreSave(obj->ncbiBlastHspBitScore, indent+2, f); ncbiBlastHspScoreSave(obj->ncbiBlastHspScore, indent+2, f); ncbiBlastHspEvalueSave(obj->ncbiBlastHspEvalue, indent+2, f); ncbiBlastHspQueryFromSave(obj->ncbiBlastHspQueryFrom, indent+2, f); ncbiBlastHspQueryToSave(obj->ncbiBlastHspQueryTo, indent+2, f); ncbiBlastHspHitFromSave(obj->ncbiBlastHspHitFrom, indent+2, f); ncbiBlastHspHitToSave(obj->ncbiBlastHspHitTo, indent+2, f); ncbiBlastHspPatternFromSave(obj->ncbiBlastHspPatternFrom, indent+2, f); ncbiBlastHspPatternToSave(obj->ncbiBlastHspPatternTo, indent+2, f); ncbiBlastHspQueryFrameSave(obj->ncbiBlastHspQueryFrame, indent+2, f); ncbiBlastHspHitFrameSave(obj->ncbiBlastHspHitFrame, indent+2, f); ncbiBlastHspIdentitySave(obj->ncbiBlastHspIdentity, indent+2, f); ncbiBlastHspPositiveSave(obj->ncbiBlastHspPositive, indent+2, f); ncbiBlastHspGapsSave(obj->ncbiBlastHspGaps, indent+2, f); ncbiBlastHspAlignLenSave(obj->ncbiBlastHspAlignLen, indent+2, f); ncbiBlastHspDensitySave(obj->ncbiBlastHspDensity, indent+2, f); ncbiBlastHspQseqSave(obj->ncbiBlastHspQseq, indent+2, f); ncbiBlastHspHseqSave(obj->ncbiBlastHspHseq, indent+2, f); ncbiBlastHspMidlineSave(obj->ncbiBlastHspMidline, indent+2, f); xapIndent(indent, f); fprintf(f, "\n"); } struct ncbiBlastHsp *ncbiBlastHspLoad(char *fileName) /* Load ncbiBlastHsp from XML file where it is root element. */ { struct ncbiBlastHsp *obj; xapParseAny(fileName, "Hsp", ncbiBlastStartHandler, ncbiBlastEndHandler, NULL, &obj); return obj; } struct ncbiBlastHsp *ncbiBlastHspLoadNext(struct xap *xap) /* Load next ncbiBlastHsp element. Use xapOpen to get xap. */ { return xapNext(xap, "Hsp"); } void ncbiBlastHspNumFree(struct ncbiBlastHspNum **pObj) /* Free up ncbiBlastHspNum. */ { struct ncbiBlastHspNum *obj = *pObj; if (obj == NULL) return; freez(pObj); } void ncbiBlastHspNumFreeList(struct ncbiBlastHspNum **pList) /* Free up list of ncbiBlastHspNum. */ { struct ncbiBlastHspNum *el, *next; for (el = *pList; el != NULL; el = next) { next = el->next; ncbiBlastHspNumFree(&el); el = next; } } void ncbiBlastHspNumSave(struct ncbiBlastHspNum *obj, int indent, FILE *f) /* Save ncbiBlastHspNum to file. */ { if (obj == NULL) return; xapIndent(indent, f); fprintf(f, ""); fprintf(f, "%d", obj->text); fprintf(f, "\n"); } struct ncbiBlastHspNum *ncbiBlastHspNumLoad(char *fileName) /* Load ncbiBlastHspNum from XML file where it is root element. */ { struct ncbiBlastHspNum *obj; xapParseAny(fileName, "Hsp_num", ncbiBlastStartHandler, ncbiBlastEndHandler, NULL, &obj); return obj; } struct ncbiBlastHspNum *ncbiBlastHspNumLoadNext(struct xap *xap) /* Load next ncbiBlastHspNum element. Use xapOpen to get xap. */ { return xapNext(xap, "Hsp_num"); } void ncbiBlastHspBitScoreFree(struct ncbiBlastHspBitScore **pObj) /* Free up ncbiBlastHspBitScore. */ { struct ncbiBlastHspBitScore *obj = *pObj; if (obj == NULL) return; freez(pObj); } void ncbiBlastHspBitScoreFreeList(struct ncbiBlastHspBitScore **pList) /* Free up list of ncbiBlastHspBitScore. */ { struct ncbiBlastHspBitScore *el, *next; for (el = *pList; el != NULL; el = next) { next = el->next; ncbiBlastHspBitScoreFree(&el); el = next; } } void ncbiBlastHspBitScoreSave(struct ncbiBlastHspBitScore *obj, int indent, FILE *f) /* Save ncbiBlastHspBitScore to file. */ { if (obj == NULL) return; xapIndent(indent, f); fprintf(f, ""); fprintf(f, "%f", obj->text); fprintf(f, "\n"); } struct ncbiBlastHspBitScore *ncbiBlastHspBitScoreLoad(char *fileName) /* Load ncbiBlastHspBitScore from XML file where it is root element. */ { struct ncbiBlastHspBitScore *obj; xapParseAny(fileName, "Hsp_bit-score", ncbiBlastStartHandler, ncbiBlastEndHandler, NULL, &obj); return obj; } struct ncbiBlastHspBitScore *ncbiBlastHspBitScoreLoadNext(struct xap *xap) /* Load next ncbiBlastHspBitScore element. Use xapOpen to get xap. */ { return xapNext(xap, "Hsp_bit-score"); } void ncbiBlastHspScoreFree(struct ncbiBlastHspScore **pObj) /* Free up ncbiBlastHspScore. */ { struct ncbiBlastHspScore *obj = *pObj; if (obj == NULL) return; freez(pObj); } void ncbiBlastHspScoreFreeList(struct ncbiBlastHspScore **pList) /* Free up list of ncbiBlastHspScore. */ { struct ncbiBlastHspScore *el, *next; for (el = *pList; el != NULL; el = next) { next = el->next; ncbiBlastHspScoreFree(&el); el = next; } } void ncbiBlastHspScoreSave(struct ncbiBlastHspScore *obj, int indent, FILE *f) /* Save ncbiBlastHspScore to file. */ { if (obj == NULL) return; xapIndent(indent, f); fprintf(f, ""); fprintf(f, "%f", obj->text); fprintf(f, "\n"); } struct ncbiBlastHspScore *ncbiBlastHspScoreLoad(char *fileName) /* Load ncbiBlastHspScore from XML file where it is root element. */ { struct ncbiBlastHspScore *obj; xapParseAny(fileName, "Hsp_score", ncbiBlastStartHandler, ncbiBlastEndHandler, NULL, &obj); return obj; } struct ncbiBlastHspScore *ncbiBlastHspScoreLoadNext(struct xap *xap) /* Load next ncbiBlastHspScore element. Use xapOpen to get xap. */ { return xapNext(xap, "Hsp_score"); } void ncbiBlastHspEvalueFree(struct ncbiBlastHspEvalue **pObj) /* Free up ncbiBlastHspEvalue. */ { struct ncbiBlastHspEvalue *obj = *pObj; if (obj == NULL) return; freez(pObj); } void ncbiBlastHspEvalueFreeList(struct ncbiBlastHspEvalue **pList) /* Free up list of ncbiBlastHspEvalue. */ { struct ncbiBlastHspEvalue *el, *next; for (el = *pList; el != NULL; el = next) { next = el->next; ncbiBlastHspEvalueFree(&el); el = next; } } void ncbiBlastHspEvalueSave(struct ncbiBlastHspEvalue *obj, int indent, FILE *f) /* Save ncbiBlastHspEvalue to file. */ { if (obj == NULL) return; xapIndent(indent, f); fprintf(f, ""); fprintf(f, "%f", obj->text); fprintf(f, "\n"); } struct ncbiBlastHspEvalue *ncbiBlastHspEvalueLoad(char *fileName) /* Load ncbiBlastHspEvalue from XML file where it is root element. */ { struct ncbiBlastHspEvalue *obj; xapParseAny(fileName, "Hsp_evalue", ncbiBlastStartHandler, ncbiBlastEndHandler, NULL, &obj); return obj; } struct ncbiBlastHspEvalue *ncbiBlastHspEvalueLoadNext(struct xap *xap) /* Load next ncbiBlastHspEvalue element. Use xapOpen to get xap. */ { return xapNext(xap, "Hsp_evalue"); } void ncbiBlastHspQueryFromFree(struct ncbiBlastHspQueryFrom **pObj) /* Free up ncbiBlastHspQueryFrom. */ { struct ncbiBlastHspQueryFrom *obj = *pObj; if (obj == NULL) return; freez(pObj); } void ncbiBlastHspQueryFromFreeList(struct ncbiBlastHspQueryFrom **pList) /* Free up list of ncbiBlastHspQueryFrom. */ { struct ncbiBlastHspQueryFrom *el, *next; for (el = *pList; el != NULL; el = next) { next = el->next; ncbiBlastHspQueryFromFree(&el); el = next; } } void ncbiBlastHspQueryFromSave(struct ncbiBlastHspQueryFrom *obj, int indent, FILE *f) /* Save ncbiBlastHspQueryFrom to file. */ { if (obj == NULL) return; xapIndent(indent, f); fprintf(f, ""); fprintf(f, "%d", obj->text); fprintf(f, "\n"); } struct ncbiBlastHspQueryFrom *ncbiBlastHspQueryFromLoad(char *fileName) /* Load ncbiBlastHspQueryFrom from XML file where it is root element. */ { struct ncbiBlastHspQueryFrom *obj; xapParseAny(fileName, "Hsp_query-from", ncbiBlastStartHandler, ncbiBlastEndHandler, NULL, &obj); return obj; } struct ncbiBlastHspQueryFrom *ncbiBlastHspQueryFromLoadNext(struct xap *xap) /* Load next ncbiBlastHspQueryFrom element. Use xapOpen to get xap. */ { return xapNext(xap, "Hsp_query-from"); } void ncbiBlastHspQueryToFree(struct ncbiBlastHspQueryTo **pObj) /* Free up ncbiBlastHspQueryTo. */ { struct ncbiBlastHspQueryTo *obj = *pObj; if (obj == NULL) return; freez(pObj); } void ncbiBlastHspQueryToFreeList(struct ncbiBlastHspQueryTo **pList) /* Free up list of ncbiBlastHspQueryTo. */ { struct ncbiBlastHspQueryTo *el, *next; for (el = *pList; el != NULL; el = next) { next = el->next; ncbiBlastHspQueryToFree(&el); el = next; } } void ncbiBlastHspQueryToSave(struct ncbiBlastHspQueryTo *obj, int indent, FILE *f) /* Save ncbiBlastHspQueryTo to file. */ { if (obj == NULL) return; xapIndent(indent, f); fprintf(f, ""); fprintf(f, "%d", obj->text); fprintf(f, "\n"); } struct ncbiBlastHspQueryTo *ncbiBlastHspQueryToLoad(char *fileName) /* Load ncbiBlastHspQueryTo from XML file where it is root element. */ { struct ncbiBlastHspQueryTo *obj; xapParseAny(fileName, "Hsp_query-to", ncbiBlastStartHandler, ncbiBlastEndHandler, NULL, &obj); return obj; } struct ncbiBlastHspQueryTo *ncbiBlastHspQueryToLoadNext(struct xap *xap) /* Load next ncbiBlastHspQueryTo element. Use xapOpen to get xap. */ { return xapNext(xap, "Hsp_query-to"); } void ncbiBlastHspHitFromFree(struct ncbiBlastHspHitFrom **pObj) /* Free up ncbiBlastHspHitFrom. */ { struct ncbiBlastHspHitFrom *obj = *pObj; if (obj == NULL) return; freez(pObj); } void ncbiBlastHspHitFromFreeList(struct ncbiBlastHspHitFrom **pList) /* Free up list of ncbiBlastHspHitFrom. */ { struct ncbiBlastHspHitFrom *el, *next; for (el = *pList; el != NULL; el = next) { next = el->next; ncbiBlastHspHitFromFree(&el); el = next; } } void ncbiBlastHspHitFromSave(struct ncbiBlastHspHitFrom *obj, int indent, FILE *f) /* Save ncbiBlastHspHitFrom to file. */ { if (obj == NULL) return; xapIndent(indent, f); fprintf(f, ""); fprintf(f, "%d", obj->text); fprintf(f, "\n"); } struct ncbiBlastHspHitFrom *ncbiBlastHspHitFromLoad(char *fileName) /* Load ncbiBlastHspHitFrom from XML file where it is root element. */ { struct ncbiBlastHspHitFrom *obj; xapParseAny(fileName, "Hsp_hit-from", ncbiBlastStartHandler, ncbiBlastEndHandler, NULL, &obj); return obj; } struct ncbiBlastHspHitFrom *ncbiBlastHspHitFromLoadNext(struct xap *xap) /* Load next ncbiBlastHspHitFrom element. Use xapOpen to get xap. */ { return xapNext(xap, "Hsp_hit-from"); } void ncbiBlastHspHitToFree(struct ncbiBlastHspHitTo **pObj) /* Free up ncbiBlastHspHitTo. */ { struct ncbiBlastHspHitTo *obj = *pObj; if (obj == NULL) return; freez(pObj); } void ncbiBlastHspHitToFreeList(struct ncbiBlastHspHitTo **pList) /* Free up list of ncbiBlastHspHitTo. */ { struct ncbiBlastHspHitTo *el, *next; for (el = *pList; el != NULL; el = next) { next = el->next; ncbiBlastHspHitToFree(&el); el = next; } } void ncbiBlastHspHitToSave(struct ncbiBlastHspHitTo *obj, int indent, FILE *f) /* Save ncbiBlastHspHitTo to file. */ { if (obj == NULL) return; xapIndent(indent, f); fprintf(f, ""); fprintf(f, "%d", obj->text); fprintf(f, "\n"); } struct ncbiBlastHspHitTo *ncbiBlastHspHitToLoad(char *fileName) /* Load ncbiBlastHspHitTo from XML file where it is root element. */ { struct ncbiBlastHspHitTo *obj; xapParseAny(fileName, "Hsp_hit-to", ncbiBlastStartHandler, ncbiBlastEndHandler, NULL, &obj); return obj; } struct ncbiBlastHspHitTo *ncbiBlastHspHitToLoadNext(struct xap *xap) /* Load next ncbiBlastHspHitTo element. Use xapOpen to get xap. */ { return xapNext(xap, "Hsp_hit-to"); } void ncbiBlastHspPatternFromFree(struct ncbiBlastHspPatternFrom **pObj) /* Free up ncbiBlastHspPatternFrom. */ { struct ncbiBlastHspPatternFrom *obj = *pObj; if (obj == NULL) return; freez(pObj); } void ncbiBlastHspPatternFromFreeList(struct ncbiBlastHspPatternFrom **pList) /* Free up list of ncbiBlastHspPatternFrom. */ { struct ncbiBlastHspPatternFrom *el, *next; for (el = *pList; el != NULL; el = next) { next = el->next; ncbiBlastHspPatternFromFree(&el); el = next; } } void ncbiBlastHspPatternFromSave(struct ncbiBlastHspPatternFrom *obj, int indent, FILE *f) /* Save ncbiBlastHspPatternFrom to file. */ { if (obj == NULL) return; xapIndent(indent, f); fprintf(f, ""); fprintf(f, "%d", obj->text); fprintf(f, "\n"); } struct ncbiBlastHspPatternFrom *ncbiBlastHspPatternFromLoad(char *fileName) /* Load ncbiBlastHspPatternFrom from XML file where it is root element. */ { struct ncbiBlastHspPatternFrom *obj; xapParseAny(fileName, "Hsp_pattern-from", ncbiBlastStartHandler, ncbiBlastEndHandler, NULL, &obj); return obj; } struct ncbiBlastHspPatternFrom *ncbiBlastHspPatternFromLoadNext(struct xap *xap) /* Load next ncbiBlastHspPatternFrom element. Use xapOpen to get xap. */ { return xapNext(xap, "Hsp_pattern-from"); } void ncbiBlastHspPatternToFree(struct ncbiBlastHspPatternTo **pObj) /* Free up ncbiBlastHspPatternTo. */ { struct ncbiBlastHspPatternTo *obj = *pObj; if (obj == NULL) return; freez(pObj); } void ncbiBlastHspPatternToFreeList(struct ncbiBlastHspPatternTo **pList) /* Free up list of ncbiBlastHspPatternTo. */ { struct ncbiBlastHspPatternTo *el, *next; for (el = *pList; el != NULL; el = next) { next = el->next; ncbiBlastHspPatternToFree(&el); el = next; } } void ncbiBlastHspPatternToSave(struct ncbiBlastHspPatternTo *obj, int indent, FILE *f) /* Save ncbiBlastHspPatternTo to file. */ { if (obj == NULL) return; xapIndent(indent, f); fprintf(f, ""); fprintf(f, "%d", obj->text); fprintf(f, "\n"); } struct ncbiBlastHspPatternTo *ncbiBlastHspPatternToLoad(char *fileName) /* Load ncbiBlastHspPatternTo from XML file where it is root element. */ { struct ncbiBlastHspPatternTo *obj; xapParseAny(fileName, "Hsp_pattern-to", ncbiBlastStartHandler, ncbiBlastEndHandler, NULL, &obj); return obj; } struct ncbiBlastHspPatternTo *ncbiBlastHspPatternToLoadNext(struct xap *xap) /* Load next ncbiBlastHspPatternTo element. Use xapOpen to get xap. */ { return xapNext(xap, "Hsp_pattern-to"); } void ncbiBlastHspQueryFrameFree(struct ncbiBlastHspQueryFrame **pObj) /* Free up ncbiBlastHspQueryFrame. */ { struct ncbiBlastHspQueryFrame *obj = *pObj; if (obj == NULL) return; freez(pObj); } void ncbiBlastHspQueryFrameFreeList(struct ncbiBlastHspQueryFrame **pList) /* Free up list of ncbiBlastHspQueryFrame. */ { struct ncbiBlastHspQueryFrame *el, *next; for (el = *pList; el != NULL; el = next) { next = el->next; ncbiBlastHspQueryFrameFree(&el); el = next; } } void ncbiBlastHspQueryFrameSave(struct ncbiBlastHspQueryFrame *obj, int indent, FILE *f) /* Save ncbiBlastHspQueryFrame to file. */ { if (obj == NULL) return; xapIndent(indent, f); fprintf(f, ""); fprintf(f, "%d", obj->text); fprintf(f, "\n"); } struct ncbiBlastHspQueryFrame *ncbiBlastHspQueryFrameLoad(char *fileName) /* Load ncbiBlastHspQueryFrame from XML file where it is root element. */ { struct ncbiBlastHspQueryFrame *obj; xapParseAny(fileName, "Hsp_query-frame", ncbiBlastStartHandler, ncbiBlastEndHandler, NULL, &obj); return obj; } struct ncbiBlastHspQueryFrame *ncbiBlastHspQueryFrameLoadNext(struct xap *xap) /* Load next ncbiBlastHspQueryFrame element. Use xapOpen to get xap. */ { return xapNext(xap, "Hsp_query-frame"); } void ncbiBlastHspHitFrameFree(struct ncbiBlastHspHitFrame **pObj) /* Free up ncbiBlastHspHitFrame. */ { struct ncbiBlastHspHitFrame *obj = *pObj; if (obj == NULL) return; freez(pObj); } void ncbiBlastHspHitFrameFreeList(struct ncbiBlastHspHitFrame **pList) /* Free up list of ncbiBlastHspHitFrame. */ { struct ncbiBlastHspHitFrame *el, *next; for (el = *pList; el != NULL; el = next) { next = el->next; ncbiBlastHspHitFrameFree(&el); el = next; } } void ncbiBlastHspHitFrameSave(struct ncbiBlastHspHitFrame *obj, int indent, FILE *f) /* Save ncbiBlastHspHitFrame to file. */ { if (obj == NULL) return; xapIndent(indent, f); fprintf(f, ""); fprintf(f, "%d", obj->text); fprintf(f, "\n"); } struct ncbiBlastHspHitFrame *ncbiBlastHspHitFrameLoad(char *fileName) /* Load ncbiBlastHspHitFrame from XML file where it is root element. */ { struct ncbiBlastHspHitFrame *obj; xapParseAny(fileName, "Hsp_hit-frame", ncbiBlastStartHandler, ncbiBlastEndHandler, NULL, &obj); return obj; } struct ncbiBlastHspHitFrame *ncbiBlastHspHitFrameLoadNext(struct xap *xap) /* Load next ncbiBlastHspHitFrame element. Use xapOpen to get xap. */ { return xapNext(xap, "Hsp_hit-frame"); } void ncbiBlastHspIdentityFree(struct ncbiBlastHspIdentity **pObj) /* Free up ncbiBlastHspIdentity. */ { struct ncbiBlastHspIdentity *obj = *pObj; if (obj == NULL) return; freez(pObj); } void ncbiBlastHspIdentityFreeList(struct ncbiBlastHspIdentity **pList) /* Free up list of ncbiBlastHspIdentity. */ { struct ncbiBlastHspIdentity *el, *next; for (el = *pList; el != NULL; el = next) { next = el->next; ncbiBlastHspIdentityFree(&el); el = next; } } void ncbiBlastHspIdentitySave(struct ncbiBlastHspIdentity *obj, int indent, FILE *f) /* Save ncbiBlastHspIdentity to file. */ { if (obj == NULL) return; xapIndent(indent, f); fprintf(f, ""); fprintf(f, "%d", obj->text); fprintf(f, "\n"); } struct ncbiBlastHspIdentity *ncbiBlastHspIdentityLoad(char *fileName) /* Load ncbiBlastHspIdentity from XML file where it is root element. */ { struct ncbiBlastHspIdentity *obj; xapParseAny(fileName, "Hsp_identity", ncbiBlastStartHandler, ncbiBlastEndHandler, NULL, &obj); return obj; } struct ncbiBlastHspIdentity *ncbiBlastHspIdentityLoadNext(struct xap *xap) /* Load next ncbiBlastHspIdentity element. Use xapOpen to get xap. */ { return xapNext(xap, "Hsp_identity"); } void ncbiBlastHspPositiveFree(struct ncbiBlastHspPositive **pObj) /* Free up ncbiBlastHspPositive. */ { struct ncbiBlastHspPositive *obj = *pObj; if (obj == NULL) return; freez(pObj); } void ncbiBlastHspPositiveFreeList(struct ncbiBlastHspPositive **pList) /* Free up list of ncbiBlastHspPositive. */ { struct ncbiBlastHspPositive *el, *next; for (el = *pList; el != NULL; el = next) { next = el->next; ncbiBlastHspPositiveFree(&el); el = next; } } void ncbiBlastHspPositiveSave(struct ncbiBlastHspPositive *obj, int indent, FILE *f) /* Save ncbiBlastHspPositive to file. */ { if (obj == NULL) return; xapIndent(indent, f); fprintf(f, ""); fprintf(f, "%d", obj->text); fprintf(f, "\n"); } struct ncbiBlastHspPositive *ncbiBlastHspPositiveLoad(char *fileName) /* Load ncbiBlastHspPositive from XML file where it is root element. */ { struct ncbiBlastHspPositive *obj; xapParseAny(fileName, "Hsp_positive", ncbiBlastStartHandler, ncbiBlastEndHandler, NULL, &obj); return obj; } struct ncbiBlastHspPositive *ncbiBlastHspPositiveLoadNext(struct xap *xap) /* Load next ncbiBlastHspPositive element. Use xapOpen to get xap. */ { return xapNext(xap, "Hsp_positive"); } void ncbiBlastHspGapsFree(struct ncbiBlastHspGaps **pObj) /* Free up ncbiBlastHspGaps. */ { struct ncbiBlastHspGaps *obj = *pObj; if (obj == NULL) return; freez(pObj); } void ncbiBlastHspGapsFreeList(struct ncbiBlastHspGaps **pList) /* Free up list of ncbiBlastHspGaps. */ { struct ncbiBlastHspGaps *el, *next; for (el = *pList; el != NULL; el = next) { next = el->next; ncbiBlastHspGapsFree(&el); el = next; } } void ncbiBlastHspGapsSave(struct ncbiBlastHspGaps *obj, int indent, FILE *f) /* Save ncbiBlastHspGaps to file. */ { if (obj == NULL) return; xapIndent(indent, f); fprintf(f, ""); fprintf(f, "%d", obj->text); fprintf(f, "\n"); } struct ncbiBlastHspGaps *ncbiBlastHspGapsLoad(char *fileName) /* Load ncbiBlastHspGaps from XML file where it is root element. */ { struct ncbiBlastHspGaps *obj; xapParseAny(fileName, "Hsp_gaps", ncbiBlastStartHandler, ncbiBlastEndHandler, NULL, &obj); return obj; } struct ncbiBlastHspGaps *ncbiBlastHspGapsLoadNext(struct xap *xap) /* Load next ncbiBlastHspGaps element. Use xapOpen to get xap. */ { return xapNext(xap, "Hsp_gaps"); } void ncbiBlastHspAlignLenFree(struct ncbiBlastHspAlignLen **pObj) /* Free up ncbiBlastHspAlignLen. */ { struct ncbiBlastHspAlignLen *obj = *pObj; if (obj == NULL) return; freez(pObj); } void ncbiBlastHspAlignLenFreeList(struct ncbiBlastHspAlignLen **pList) /* Free up list of ncbiBlastHspAlignLen. */ { struct ncbiBlastHspAlignLen *el, *next; for (el = *pList; el != NULL; el = next) { next = el->next; ncbiBlastHspAlignLenFree(&el); el = next; } } void ncbiBlastHspAlignLenSave(struct ncbiBlastHspAlignLen *obj, int indent, FILE *f) /* Save ncbiBlastHspAlignLen to file. */ { if (obj == NULL) return; xapIndent(indent, f); fprintf(f, ""); fprintf(f, "%d", obj->text); fprintf(f, "\n"); } struct ncbiBlastHspAlignLen *ncbiBlastHspAlignLenLoad(char *fileName) /* Load ncbiBlastHspAlignLen from XML file where it is root element. */ { struct ncbiBlastHspAlignLen *obj; xapParseAny(fileName, "Hsp_align-len", ncbiBlastStartHandler, ncbiBlastEndHandler, NULL, &obj); return obj; } struct ncbiBlastHspAlignLen *ncbiBlastHspAlignLenLoadNext(struct xap *xap) /* Load next ncbiBlastHspAlignLen element. Use xapOpen to get xap. */ { return xapNext(xap, "Hsp_align-len"); } void ncbiBlastHspDensityFree(struct ncbiBlastHspDensity **pObj) /* Free up ncbiBlastHspDensity. */ { struct ncbiBlastHspDensity *obj = *pObj; if (obj == NULL) return; freez(pObj); } void ncbiBlastHspDensityFreeList(struct ncbiBlastHspDensity **pList) /* Free up list of ncbiBlastHspDensity. */ { struct ncbiBlastHspDensity *el, *next; for (el = *pList; el != NULL; el = next) { next = el->next; ncbiBlastHspDensityFree(&el); el = next; } } void ncbiBlastHspDensitySave(struct ncbiBlastHspDensity *obj, int indent, FILE *f) /* Save ncbiBlastHspDensity to file. */ { if (obj == NULL) return; xapIndent(indent, f); fprintf(f, ""); fprintf(f, "%d", obj->text); fprintf(f, "\n"); } struct ncbiBlastHspDensity *ncbiBlastHspDensityLoad(char *fileName) /* Load ncbiBlastHspDensity from XML file where it is root element. */ { struct ncbiBlastHspDensity *obj; xapParseAny(fileName, "Hsp_density", ncbiBlastStartHandler, ncbiBlastEndHandler, NULL, &obj); return obj; } struct ncbiBlastHspDensity *ncbiBlastHspDensityLoadNext(struct xap *xap) /* Load next ncbiBlastHspDensity element. Use xapOpen to get xap. */ { return xapNext(xap, "Hsp_density"); } void ncbiBlastHspQseqFree(struct ncbiBlastHspQseq **pObj) /* Free up ncbiBlastHspQseq. */ { struct ncbiBlastHspQseq *obj = *pObj; if (obj == NULL) return; freeMem(obj->text); freez(pObj); } void ncbiBlastHspQseqFreeList(struct ncbiBlastHspQseq **pList) /* Free up list of ncbiBlastHspQseq. */ { struct ncbiBlastHspQseq *el, *next; for (el = *pList; el != NULL; el = next) { next = el->next; ncbiBlastHspQseqFree(&el); el = next; } } void ncbiBlastHspQseqSave(struct ncbiBlastHspQseq *obj, int indent, FILE *f) /* Save ncbiBlastHspQseq to file. */ { if (obj == NULL) return; xapIndent(indent, f); fprintf(f, ""); fprintf(f, "%s", obj->text); fprintf(f, "\n"); } struct ncbiBlastHspQseq *ncbiBlastHspQseqLoad(char *fileName) /* Load ncbiBlastHspQseq from XML file where it is root element. */ { struct ncbiBlastHspQseq *obj; xapParseAny(fileName, "Hsp_qseq", ncbiBlastStartHandler, ncbiBlastEndHandler, NULL, &obj); return obj; } struct ncbiBlastHspQseq *ncbiBlastHspQseqLoadNext(struct xap *xap) /* Load next ncbiBlastHspQseq element. Use xapOpen to get xap. */ { return xapNext(xap, "Hsp_qseq"); } void ncbiBlastHspHseqFree(struct ncbiBlastHspHseq **pObj) /* Free up ncbiBlastHspHseq. */ { struct ncbiBlastHspHseq *obj = *pObj; if (obj == NULL) return; freeMem(obj->text); freez(pObj); } void ncbiBlastHspHseqFreeList(struct ncbiBlastHspHseq **pList) /* Free up list of ncbiBlastHspHseq. */ { struct ncbiBlastHspHseq *el, *next; for (el = *pList; el != NULL; el = next) { next = el->next; ncbiBlastHspHseqFree(&el); el = next; } } void ncbiBlastHspHseqSave(struct ncbiBlastHspHseq *obj, int indent, FILE *f) /* Save ncbiBlastHspHseq to file. */ { if (obj == NULL) return; xapIndent(indent, f); fprintf(f, ""); fprintf(f, "%s", obj->text); fprintf(f, "\n"); } struct ncbiBlastHspHseq *ncbiBlastHspHseqLoad(char *fileName) /* Load ncbiBlastHspHseq from XML file where it is root element. */ { struct ncbiBlastHspHseq *obj; xapParseAny(fileName, "Hsp_hseq", ncbiBlastStartHandler, ncbiBlastEndHandler, NULL, &obj); return obj; } struct ncbiBlastHspHseq *ncbiBlastHspHseqLoadNext(struct xap *xap) /* Load next ncbiBlastHspHseq element. Use xapOpen to get xap. */ { return xapNext(xap, "Hsp_hseq"); } void ncbiBlastHspMidlineFree(struct ncbiBlastHspMidline **pObj) /* Free up ncbiBlastHspMidline. */ { struct ncbiBlastHspMidline *obj = *pObj; if (obj == NULL) return; freeMem(obj->text); freez(pObj); } void ncbiBlastHspMidlineFreeList(struct ncbiBlastHspMidline **pList) /* Free up list of ncbiBlastHspMidline. */ { struct ncbiBlastHspMidline *el, *next; for (el = *pList; el != NULL; el = next) { next = el->next; ncbiBlastHspMidlineFree(&el); el = next; } } void ncbiBlastHspMidlineSave(struct ncbiBlastHspMidline *obj, int indent, FILE *f) /* Save ncbiBlastHspMidline to file. */ { if (obj == NULL) return; xapIndent(indent, f); fprintf(f, ""); fprintf(f, "%s", obj->text); fprintf(f, "\n"); } struct ncbiBlastHspMidline *ncbiBlastHspMidlineLoad(char *fileName) /* Load ncbiBlastHspMidline from XML file where it is root element. */ { struct ncbiBlastHspMidline *obj; xapParseAny(fileName, "Hsp_midline", ncbiBlastStartHandler, ncbiBlastEndHandler, NULL, &obj); return obj; } struct ncbiBlastHspMidline *ncbiBlastHspMidlineLoadNext(struct xap *xap) /* Load next ncbiBlastHspMidline element. Use xapOpen to get xap. */ { return xapNext(xap, "Hsp_midline"); } void *ncbiBlastStartHandler(struct xap *xp, char *name, char **atts) /* Called by xap with start tag. Does most of the parsing work. */ { struct xapStack *st = xp->stack+1; int depth = xp->stackDepth; if (sameString(name, "BlastOutput")) { struct ncbiBlastBlastOutput *obj; AllocVar(obj); return obj; } else if (sameString(name, "BlastOutput_program")) { struct ncbiBlastBlastOutputProgram *obj; AllocVar(obj); if (depth > 1) { if (sameString(st->elName, "BlastOutput")) { struct ncbiBlastBlastOutput *parent = st->object; slAddHead(&parent->ncbiBlastBlastOutputProgram, obj); } } return obj; } else if (sameString(name, "BlastOutput_version")) { struct ncbiBlastBlastOutputVersion *obj; AllocVar(obj); if (depth > 1) { if (sameString(st->elName, "BlastOutput")) { struct ncbiBlastBlastOutput *parent = st->object; slAddHead(&parent->ncbiBlastBlastOutputVersion, obj); } } return obj; } else if (sameString(name, "BlastOutput_reference")) { struct ncbiBlastBlastOutputReference *obj; AllocVar(obj); if (depth > 1) { if (sameString(st->elName, "BlastOutput")) { struct ncbiBlastBlastOutput *parent = st->object; slAddHead(&parent->ncbiBlastBlastOutputReference, obj); } } return obj; } else if (sameString(name, "BlastOutput_db")) { struct ncbiBlastBlastOutputDb *obj; AllocVar(obj); if (depth > 1) { if (sameString(st->elName, "BlastOutput")) { struct ncbiBlastBlastOutput *parent = st->object; slAddHead(&parent->ncbiBlastBlastOutputDb, obj); } } return obj; } else if (sameString(name, "BlastOutput_query-ID")) { struct ncbiBlastBlastOutputQueryID *obj; AllocVar(obj); if (depth > 1) { if (sameString(st->elName, "BlastOutput")) { struct ncbiBlastBlastOutput *parent = st->object; slAddHead(&parent->ncbiBlastBlastOutputQueryID, obj); } } return obj; } else if (sameString(name, "BlastOutput_query-def")) { struct ncbiBlastBlastOutputQueryDef *obj; AllocVar(obj); if (depth > 1) { if (sameString(st->elName, "BlastOutput")) { struct ncbiBlastBlastOutput *parent = st->object; slAddHead(&parent->ncbiBlastBlastOutputQueryDef, obj); } } return obj; } else if (sameString(name, "BlastOutput_query-len")) { struct ncbiBlastBlastOutputQueryLen *obj; AllocVar(obj); if (depth > 1) { if (sameString(st->elName, "BlastOutput")) { struct ncbiBlastBlastOutput *parent = st->object; slAddHead(&parent->ncbiBlastBlastOutputQueryLen, obj); } } return obj; } else if (sameString(name, "BlastOutput_query-seq")) { struct ncbiBlastBlastOutputQuerySeq *obj; AllocVar(obj); if (depth > 1) { if (sameString(st->elName, "BlastOutput")) { struct ncbiBlastBlastOutput *parent = st->object; slAddHead(&parent->ncbiBlastBlastOutputQuerySeq, obj); } } return obj; } else if (sameString(name, "BlastOutput_param")) { struct ncbiBlastBlastOutputParam *obj; AllocVar(obj); if (depth > 1) { if (sameString(st->elName, "BlastOutput")) { struct ncbiBlastBlastOutput *parent = st->object; slAddHead(&parent->ncbiBlastBlastOutputParam, obj); } } return obj; } else if (sameString(name, "BlastOutput_iterations")) { struct ncbiBlastBlastOutputIterations *obj; AllocVar(obj); if (depth > 1) { if (sameString(st->elName, "BlastOutput")) { struct ncbiBlastBlastOutput *parent = st->object; slAddHead(&parent->ncbiBlastBlastOutputIterations, obj); } } return obj; } else if (sameString(name, "BlastOutput_mbstat")) { struct ncbiBlastBlastOutputMbstat *obj; AllocVar(obj); if (depth > 1) { if (sameString(st->elName, "BlastOutput")) { struct ncbiBlastBlastOutput *parent = st->object; slAddHead(&parent->ncbiBlastBlastOutputMbstat, obj); } } return obj; } else if (sameString(name, "Iteration")) { struct ncbiBlastIteration *obj; AllocVar(obj); if (depth > 1) { if (sameString(st->elName, "BlastOutput_iterations")) { struct ncbiBlastBlastOutputIterations *parent = st->object; slAddHead(&parent->ncbiBlastIteration, obj); } } return obj; } else if (sameString(name, "Iteration_iter-num")) { struct ncbiBlastIterationIterNum *obj; AllocVar(obj); if (depth > 1) { if (sameString(st->elName, "Iteration")) { struct ncbiBlastIteration *parent = st->object; slAddHead(&parent->ncbiBlastIterationIterNum, obj); } } return obj; } else if (sameString(name, "Iteration_query-ID")) { struct ncbiBlastIterationQueryID *obj; AllocVar(obj); if (depth > 1) { if (sameString(st->elName, "Iteration")) { struct ncbiBlastIteration *parent = st->object; slAddHead(&parent->ncbiBlastIterationQueryID, obj); } } return obj; } else if (sameString(name, "Iteration_query-def")) { struct ncbiBlastIterationQueryDef *obj; AllocVar(obj); if (depth > 1) { if (sameString(st->elName, "Iteration")) { struct ncbiBlastIteration *parent = st->object; slAddHead(&parent->ncbiBlastIterationQueryDef, obj); } } return obj; } else if (sameString(name, "Iteration_query-len")) { struct ncbiBlastIterationQueryLen *obj; AllocVar(obj); if (depth > 1) { if (sameString(st->elName, "Iteration")) { struct ncbiBlastIteration *parent = st->object; slAddHead(&parent->ncbiBlastIterationQueryLen, obj); } } return obj; } else if (sameString(name, "Iteration_hits")) { struct ncbiBlastIterationHits *obj; AllocVar(obj); if (depth > 1) { if (sameString(st->elName, "Iteration")) { struct ncbiBlastIteration *parent = st->object; slAddHead(&parent->ncbiBlastIterationHits, obj); } } return obj; } else if (sameString(name, "Iteration_stat")) { struct ncbiBlastIterationStat *obj; AllocVar(obj); if (depth > 1) { if (sameString(st->elName, "Iteration")) { struct ncbiBlastIteration *parent = st->object; slAddHead(&parent->ncbiBlastIterationStat, obj); } } return obj; } else if (sameString(name, "Iteration_message")) { struct ncbiBlastIterationMessage *obj; AllocVar(obj); if (depth > 1) { if (sameString(st->elName, "Iteration")) { struct ncbiBlastIteration *parent = st->object; slAddHead(&parent->ncbiBlastIterationMessage, obj); } } return obj; } else if (sameString(name, "Parameters")) { struct ncbiBlastParameters *obj; AllocVar(obj); if (depth > 1) { if (sameString(st->elName, "BlastOutput_param")) { struct ncbiBlastBlastOutputParam *parent = st->object; slAddHead(&parent->ncbiBlastParameters, obj); } } return obj; } else if (sameString(name, "Parameters_matrix")) { struct ncbiBlastParametersMatrix *obj; AllocVar(obj); if (depth > 1) { if (sameString(st->elName, "Parameters")) { struct ncbiBlastParameters *parent = st->object; slAddHead(&parent->ncbiBlastParametersMatrix, obj); } } return obj; } else if (sameString(name, "Parameters_expect")) { struct ncbiBlastParametersExpect *obj; AllocVar(obj); if (depth > 1) { if (sameString(st->elName, "Parameters")) { struct ncbiBlastParameters *parent = st->object; slAddHead(&parent->ncbiBlastParametersExpect, obj); } } return obj; } else if (sameString(name, "Parameters_include")) { struct ncbiBlastParametersInclude *obj; AllocVar(obj); if (depth > 1) { if (sameString(st->elName, "Parameters")) { struct ncbiBlastParameters *parent = st->object; slAddHead(&parent->ncbiBlastParametersInclude, obj); } } return obj; } else if (sameString(name, "Parameters_sc-match")) { struct ncbiBlastParametersScMatch *obj; AllocVar(obj); if (depth > 1) { if (sameString(st->elName, "Parameters")) { struct ncbiBlastParameters *parent = st->object; slAddHead(&parent->ncbiBlastParametersScMatch, obj); } } return obj; } else if (sameString(name, "Parameters_sc-mismatch")) { struct ncbiBlastParametersScMismatch *obj; AllocVar(obj); if (depth > 1) { if (sameString(st->elName, "Parameters")) { struct ncbiBlastParameters *parent = st->object; slAddHead(&parent->ncbiBlastParametersScMismatch, obj); } } return obj; } else if (sameString(name, "Parameters_gap-open")) { struct ncbiBlastParametersGapOpen *obj; AllocVar(obj); if (depth > 1) { if (sameString(st->elName, "Parameters")) { struct ncbiBlastParameters *parent = st->object; slAddHead(&parent->ncbiBlastParametersGapOpen, obj); } } return obj; } else if (sameString(name, "Parameters_gap-extend")) { struct ncbiBlastParametersGapExtend *obj; AllocVar(obj); if (depth > 1) { if (sameString(st->elName, "Parameters")) { struct ncbiBlastParameters *parent = st->object; slAddHead(&parent->ncbiBlastParametersGapExtend, obj); } } return obj; } else if (sameString(name, "Parameters_filter")) { struct ncbiBlastParametersFilter *obj; AllocVar(obj); if (depth > 1) { if (sameString(st->elName, "Parameters")) { struct ncbiBlastParameters *parent = st->object; slAddHead(&parent->ncbiBlastParametersFilter, obj); } } return obj; } else if (sameString(name, "Parameters_pattern")) { struct ncbiBlastParametersPattern *obj; AllocVar(obj); if (depth > 1) { if (sameString(st->elName, "Parameters")) { struct ncbiBlastParameters *parent = st->object; slAddHead(&parent->ncbiBlastParametersPattern, obj); } } return obj; } else if (sameString(name, "Parameters_entrez-query")) { struct ncbiBlastParametersEntrezQuery *obj; AllocVar(obj); if (depth > 1) { if (sameString(st->elName, "Parameters")) { struct ncbiBlastParameters *parent = st->object; slAddHead(&parent->ncbiBlastParametersEntrezQuery, obj); } } return obj; } else if (sameString(name, "Statistics")) { struct ncbiBlastStatistics *obj; AllocVar(obj); if (depth > 1) { if (sameString(st->elName, "BlastOutput_mbstat")) { struct ncbiBlastBlastOutputMbstat *parent = st->object; slAddHead(&parent->ncbiBlastStatistics, obj); } else if (sameString(st->elName, "Iteration_stat")) { struct ncbiBlastIterationStat *parent = st->object; slAddHead(&parent->ncbiBlastStatistics, obj); } } return obj; } else if (sameString(name, "Statistics_db-num")) { struct ncbiBlastStatisticsDbNum *obj; AllocVar(obj); if (depth > 1) { if (sameString(st->elName, "Statistics")) { struct ncbiBlastStatistics *parent = st->object; slAddHead(&parent->ncbiBlastStatisticsDbNum, obj); } } return obj; } else if (sameString(name, "Statistics_db-len")) { struct ncbiBlastStatisticsDbLen *obj; AllocVar(obj); if (depth > 1) { if (sameString(st->elName, "Statistics")) { struct ncbiBlastStatistics *parent = st->object; slAddHead(&parent->ncbiBlastStatisticsDbLen, obj); } } return obj; } else if (sameString(name, "Statistics_hsp-len")) { struct ncbiBlastStatisticsHspLen *obj; AllocVar(obj); if (depth > 1) { if (sameString(st->elName, "Statistics")) { struct ncbiBlastStatistics *parent = st->object; slAddHead(&parent->ncbiBlastStatisticsHspLen, obj); } } return obj; } else if (sameString(name, "Statistics_eff-space")) { struct ncbiBlastStatisticsEffSpace *obj; AllocVar(obj); if (depth > 1) { if (sameString(st->elName, "Statistics")) { struct ncbiBlastStatistics *parent = st->object; slAddHead(&parent->ncbiBlastStatisticsEffSpace, obj); } } return obj; } else if (sameString(name, "Statistics_kappa")) { struct ncbiBlastStatisticsKappa *obj; AllocVar(obj); if (depth > 1) { if (sameString(st->elName, "Statistics")) { struct ncbiBlastStatistics *parent = st->object; slAddHead(&parent->ncbiBlastStatisticsKappa, obj); } } return obj; } else if (sameString(name, "Statistics_lambda")) { struct ncbiBlastStatisticsLambda *obj; AllocVar(obj); if (depth > 1) { if (sameString(st->elName, "Statistics")) { struct ncbiBlastStatistics *parent = st->object; slAddHead(&parent->ncbiBlastStatisticsLambda, obj); } } return obj; } else if (sameString(name, "Statistics_entropy")) { struct ncbiBlastStatisticsEntropy *obj; AllocVar(obj); if (depth > 1) { if (sameString(st->elName, "Statistics")) { struct ncbiBlastStatistics *parent = st->object; slAddHead(&parent->ncbiBlastStatisticsEntropy, obj); } } return obj; } else if (sameString(name, "Hit")) { struct ncbiBlastHit *obj; AllocVar(obj); if (depth > 1) { if (sameString(st->elName, "Iteration_hits")) { struct ncbiBlastIterationHits *parent = st->object; slAddHead(&parent->ncbiBlastHit, obj); } } return obj; } else if (sameString(name, "Hit_num")) { struct ncbiBlastHitNum *obj; AllocVar(obj); if (depth > 1) { if (sameString(st->elName, "Hit")) { struct ncbiBlastHit *parent = st->object; slAddHead(&parent->ncbiBlastHitNum, obj); } } return obj; } else if (sameString(name, "Hit_id")) { struct ncbiBlastHitId *obj; AllocVar(obj); if (depth > 1) { if (sameString(st->elName, "Hit")) { struct ncbiBlastHit *parent = st->object; slAddHead(&parent->ncbiBlastHitId, obj); } } return obj; } else if (sameString(name, "Hit_def")) { struct ncbiBlastHitDef *obj; AllocVar(obj); if (depth > 1) { if (sameString(st->elName, "Hit")) { struct ncbiBlastHit *parent = st->object; slAddHead(&parent->ncbiBlastHitDef, obj); } } return obj; } else if (sameString(name, "Hit_accession")) { struct ncbiBlastHitAccession *obj; AllocVar(obj); if (depth > 1) { if (sameString(st->elName, "Hit")) { struct ncbiBlastHit *parent = st->object; slAddHead(&parent->ncbiBlastHitAccession, obj); } } return obj; } else if (sameString(name, "Hit_len")) { struct ncbiBlastHitLen *obj; AllocVar(obj); if (depth > 1) { if (sameString(st->elName, "Hit")) { struct ncbiBlastHit *parent = st->object; slAddHead(&parent->ncbiBlastHitLen, obj); } } return obj; } else if (sameString(name, "Hit_hsps")) { struct ncbiBlastHitHsps *obj; AllocVar(obj); if (depth > 1) { if (sameString(st->elName, "Hit")) { struct ncbiBlastHit *parent = st->object; slAddHead(&parent->ncbiBlastHitHsps, obj); } } return obj; } else if (sameString(name, "Hsp")) { struct ncbiBlastHsp *obj; AllocVar(obj); if (depth > 1) { if (sameString(st->elName, "Hit_hsps")) { struct ncbiBlastHitHsps *parent = st->object; slAddHead(&parent->ncbiBlastHsp, obj); } } return obj; } else if (sameString(name, "Hsp_num")) { struct ncbiBlastHspNum *obj; AllocVar(obj); if (depth > 1) { if (sameString(st->elName, "Hsp")) { struct ncbiBlastHsp *parent = st->object; slAddHead(&parent->ncbiBlastHspNum, obj); } } return obj; } else if (sameString(name, "Hsp_bit-score")) { struct ncbiBlastHspBitScore *obj; AllocVar(obj); if (depth > 1) { if (sameString(st->elName, "Hsp")) { struct ncbiBlastHsp *parent = st->object; slAddHead(&parent->ncbiBlastHspBitScore, obj); } } return obj; } else if (sameString(name, "Hsp_score")) { struct ncbiBlastHspScore *obj; AllocVar(obj); if (depth > 1) { if (sameString(st->elName, "Hsp")) { struct ncbiBlastHsp *parent = st->object; slAddHead(&parent->ncbiBlastHspScore, obj); } } return obj; } else if (sameString(name, "Hsp_evalue")) { struct ncbiBlastHspEvalue *obj; AllocVar(obj); if (depth > 1) { if (sameString(st->elName, "Hsp")) { struct ncbiBlastHsp *parent = st->object; slAddHead(&parent->ncbiBlastHspEvalue, obj); } } return obj; } else if (sameString(name, "Hsp_query-from")) { struct ncbiBlastHspQueryFrom *obj; AllocVar(obj); if (depth > 1) { if (sameString(st->elName, "Hsp")) { struct ncbiBlastHsp *parent = st->object; slAddHead(&parent->ncbiBlastHspQueryFrom, obj); } } return obj; } else if (sameString(name, "Hsp_query-to")) { struct ncbiBlastHspQueryTo *obj; AllocVar(obj); if (depth > 1) { if (sameString(st->elName, "Hsp")) { struct ncbiBlastHsp *parent = st->object; slAddHead(&parent->ncbiBlastHspQueryTo, obj); } } return obj; } else if (sameString(name, "Hsp_hit-from")) { struct ncbiBlastHspHitFrom *obj; AllocVar(obj); if (depth > 1) { if (sameString(st->elName, "Hsp")) { struct ncbiBlastHsp *parent = st->object; slAddHead(&parent->ncbiBlastHspHitFrom, obj); } } return obj; } else if (sameString(name, "Hsp_hit-to")) { struct ncbiBlastHspHitTo *obj; AllocVar(obj); if (depth > 1) { if (sameString(st->elName, "Hsp")) { struct ncbiBlastHsp *parent = st->object; slAddHead(&parent->ncbiBlastHspHitTo, obj); } } return obj; } else if (sameString(name, "Hsp_pattern-from")) { struct ncbiBlastHspPatternFrom *obj; AllocVar(obj); if (depth > 1) { if (sameString(st->elName, "Hsp")) { struct ncbiBlastHsp *parent = st->object; slAddHead(&parent->ncbiBlastHspPatternFrom, obj); } } return obj; } else if (sameString(name, "Hsp_pattern-to")) { struct ncbiBlastHspPatternTo *obj; AllocVar(obj); if (depth > 1) { if (sameString(st->elName, "Hsp")) { struct ncbiBlastHsp *parent = st->object; slAddHead(&parent->ncbiBlastHspPatternTo, obj); } } return obj; } else if (sameString(name, "Hsp_query-frame")) { struct ncbiBlastHspQueryFrame *obj; AllocVar(obj); if (depth > 1) { if (sameString(st->elName, "Hsp")) { struct ncbiBlastHsp *parent = st->object; slAddHead(&parent->ncbiBlastHspQueryFrame, obj); } } return obj; } else if (sameString(name, "Hsp_hit-frame")) { struct ncbiBlastHspHitFrame *obj; AllocVar(obj); if (depth > 1) { if (sameString(st->elName, "Hsp")) { struct ncbiBlastHsp *parent = st->object; slAddHead(&parent->ncbiBlastHspHitFrame, obj); } } return obj; } else if (sameString(name, "Hsp_identity")) { struct ncbiBlastHspIdentity *obj; AllocVar(obj); if (depth > 1) { if (sameString(st->elName, "Hsp")) { struct ncbiBlastHsp *parent = st->object; slAddHead(&parent->ncbiBlastHspIdentity, obj); } } return obj; } else if (sameString(name, "Hsp_positive")) { struct ncbiBlastHspPositive *obj; AllocVar(obj); if (depth > 1) { if (sameString(st->elName, "Hsp")) { struct ncbiBlastHsp *parent = st->object; slAddHead(&parent->ncbiBlastHspPositive, obj); } } return obj; } else if (sameString(name, "Hsp_gaps")) { struct ncbiBlastHspGaps *obj; AllocVar(obj); if (depth > 1) { if (sameString(st->elName, "Hsp")) { struct ncbiBlastHsp *parent = st->object; slAddHead(&parent->ncbiBlastHspGaps, obj); } } return obj; } else if (sameString(name, "Hsp_align-len")) { struct ncbiBlastHspAlignLen *obj; AllocVar(obj); if (depth > 1) { if (sameString(st->elName, "Hsp")) { struct ncbiBlastHsp *parent = st->object; slAddHead(&parent->ncbiBlastHspAlignLen, obj); } } return obj; } else if (sameString(name, "Hsp_density")) { struct ncbiBlastHspDensity *obj; AllocVar(obj); if (depth > 1) { if (sameString(st->elName, "Hsp")) { struct ncbiBlastHsp *parent = st->object; slAddHead(&parent->ncbiBlastHspDensity, obj); } } return obj; } else if (sameString(name, "Hsp_qseq")) { struct ncbiBlastHspQseq *obj; AllocVar(obj); if (depth > 1) { if (sameString(st->elName, "Hsp")) { struct ncbiBlastHsp *parent = st->object; slAddHead(&parent->ncbiBlastHspQseq, obj); } } return obj; } else if (sameString(name, "Hsp_hseq")) { struct ncbiBlastHspHseq *obj; AllocVar(obj); if (depth > 1) { if (sameString(st->elName, "Hsp")) { struct ncbiBlastHsp *parent = st->object; slAddHead(&parent->ncbiBlastHspHseq, obj); } } return obj; } else if (sameString(name, "Hsp_midline")) { struct ncbiBlastHspMidline *obj; AllocVar(obj); if (depth > 1) { if (sameString(st->elName, "Hsp")) { struct ncbiBlastHsp *parent = st->object; slAddHead(&parent->ncbiBlastHspMidline, obj); } } return obj; } else { xapSkip(xp); return NULL; } } void ncbiBlastEndHandler(struct xap *xp, char *name) /* Called by xap with end tag. Checks all required children are loaded. */ { struct xapStack *stack = xp->stack; if (sameString(name, "BlastOutput")) { struct ncbiBlastBlastOutput *obj = stack->object; if (obj->ncbiBlastBlastOutputProgram == NULL) xapError(xp, "Missing BlastOutput_program"); if (obj->ncbiBlastBlastOutputProgram->next != NULL) xapError(xp, "Multiple BlastOutput_program"); if (obj->ncbiBlastBlastOutputVersion == NULL) xapError(xp, "Missing BlastOutput_version"); if (obj->ncbiBlastBlastOutputVersion->next != NULL) xapError(xp, "Multiple BlastOutput_version"); if (obj->ncbiBlastBlastOutputReference == NULL) xapError(xp, "Missing BlastOutput_reference"); if (obj->ncbiBlastBlastOutputReference->next != NULL) xapError(xp, "Multiple BlastOutput_reference"); if (obj->ncbiBlastBlastOutputDb == NULL) xapError(xp, "Missing BlastOutput_db"); if (obj->ncbiBlastBlastOutputDb->next != NULL) xapError(xp, "Multiple BlastOutput_db"); if (obj->ncbiBlastBlastOutputQueryID == NULL) xapError(xp, "Missing BlastOutput_query-ID"); if (obj->ncbiBlastBlastOutputQueryID->next != NULL) xapError(xp, "Multiple BlastOutput_query-ID"); if (obj->ncbiBlastBlastOutputQueryDef == NULL) xapError(xp, "Missing BlastOutput_query-def"); if (obj->ncbiBlastBlastOutputQueryDef->next != NULL) xapError(xp, "Multiple BlastOutput_query-def"); if (obj->ncbiBlastBlastOutputQueryLen == NULL) xapError(xp, "Missing BlastOutput_query-len"); if (obj->ncbiBlastBlastOutputQueryLen->next != NULL) xapError(xp, "Multiple BlastOutput_query-len"); if (obj->ncbiBlastBlastOutputQuerySeq != NULL && obj->ncbiBlastBlastOutputQuerySeq->next != NULL) xapError(xp, "Multiple BlastOutput_query-seq"); if (obj->ncbiBlastBlastOutputParam == NULL) xapError(xp, "Missing BlastOutput_param"); if (obj->ncbiBlastBlastOutputParam->next != NULL) xapError(xp, "Multiple BlastOutput_param"); if (obj->ncbiBlastBlastOutputIterations == NULL) xapError(xp, "Missing BlastOutput_iterations"); if (obj->ncbiBlastBlastOutputIterations->next != NULL) xapError(xp, "Multiple BlastOutput_iterations"); if (obj->ncbiBlastBlastOutputMbstat != NULL && obj->ncbiBlastBlastOutputMbstat->next != NULL) xapError(xp, "Multiple BlastOutput_mbstat"); } else if (sameString(name, "BlastOutput_program")) { struct ncbiBlastBlastOutputProgram *obj = stack->object; obj->text = cloneString(stack->text->string); } else if (sameString(name, "BlastOutput_version")) { struct ncbiBlastBlastOutputVersion *obj = stack->object; obj->text = cloneString(stack->text->string); } else if (sameString(name, "BlastOutput_reference")) { struct ncbiBlastBlastOutputReference *obj = stack->object; obj->text = cloneString(stack->text->string); } else if (sameString(name, "BlastOutput_db")) { struct ncbiBlastBlastOutputDb *obj = stack->object; obj->text = cloneString(stack->text->string); } else if (sameString(name, "BlastOutput_query-ID")) { struct ncbiBlastBlastOutputQueryID *obj = stack->object; obj->text = cloneString(stack->text->string); } else if (sameString(name, "BlastOutput_query-def")) { struct ncbiBlastBlastOutputQueryDef *obj = stack->object; obj->text = cloneString(stack->text->string); } else if (sameString(name, "BlastOutput_query-len")) { struct ncbiBlastBlastOutputQueryLen *obj = stack->object; obj->text = sqlSigned(stack->text->string); } else if (sameString(name, "BlastOutput_query-seq")) { struct ncbiBlastBlastOutputQuerySeq *obj = stack->object; obj->text = cloneString(stack->text->string); } else if (sameString(name, "BlastOutput_param")) { struct ncbiBlastBlastOutputParam *obj = stack->object; if (obj->ncbiBlastParameters == NULL) xapError(xp, "Missing Parameters"); if (obj->ncbiBlastParameters->next != NULL) xapError(xp, "Multiple Parameters"); } else if (sameString(name, "BlastOutput_iterations")) { struct ncbiBlastBlastOutputIterations *obj = stack->object; slReverse(&obj->ncbiBlastIteration); } else if (sameString(name, "BlastOutput_mbstat")) { struct ncbiBlastBlastOutputMbstat *obj = stack->object; if (obj->ncbiBlastStatistics == NULL) xapError(xp, "Missing Statistics"); if (obj->ncbiBlastStatistics->next != NULL) xapError(xp, "Multiple Statistics"); } else if (sameString(name, "Iteration")) { struct ncbiBlastIteration *obj = stack->object; if (obj->ncbiBlastIterationIterNum == NULL) xapError(xp, "Missing Iteration_iter-num"); if (obj->ncbiBlastIterationIterNum->next != NULL) xapError(xp, "Multiple Iteration_iter-num"); if (obj->ncbiBlastIterationQueryID != NULL && obj->ncbiBlastIterationQueryID->next != NULL) xapError(xp, "Multiple Iteration_query-ID"); if (obj->ncbiBlastIterationQueryDef != NULL && obj->ncbiBlastIterationQueryDef->next != NULL) xapError(xp, "Multiple Iteration_query-def"); if (obj->ncbiBlastIterationQueryLen != NULL && obj->ncbiBlastIterationQueryLen->next != NULL) xapError(xp, "Multiple Iteration_query-len"); if (obj->ncbiBlastIterationHits != NULL && obj->ncbiBlastIterationHits->next != NULL) xapError(xp, "Multiple Iteration_hits"); if (obj->ncbiBlastIterationStat != NULL && obj->ncbiBlastIterationStat->next != NULL) xapError(xp, "Multiple Iteration_stat"); if (obj->ncbiBlastIterationMessage != NULL && obj->ncbiBlastIterationMessage->next != NULL) xapError(xp, "Multiple Iteration_message"); } else if (sameString(name, "Iteration_iter-num")) { struct ncbiBlastIterationIterNum *obj = stack->object; obj->text = sqlSigned(stack->text->string); } else if (sameString(name, "Iteration_query-ID")) { struct ncbiBlastIterationQueryID *obj = stack->object; obj->text = cloneString(stack->text->string); } else if (sameString(name, "Iteration_query-def")) { struct ncbiBlastIterationQueryDef *obj = stack->object; obj->text = cloneString(stack->text->string); } else if (sameString(name, "Iteration_query-len")) { struct ncbiBlastIterationQueryLen *obj = stack->object; obj->text = sqlSigned(stack->text->string); } else if (sameString(name, "Iteration_hits")) { struct ncbiBlastIterationHits *obj = stack->object; slReverse(&obj->ncbiBlastHit); } else if (sameString(name, "Iteration_stat")) { struct ncbiBlastIterationStat *obj = stack->object; if (obj->ncbiBlastStatistics == NULL) xapError(xp, "Missing Statistics"); if (obj->ncbiBlastStatistics->next != NULL) xapError(xp, "Multiple Statistics"); } else if (sameString(name, "Iteration_message")) { struct ncbiBlastIterationMessage *obj = stack->object; obj->text = cloneString(stack->text->string); } else if (sameString(name, "Parameters")) { struct ncbiBlastParameters *obj = stack->object; if (obj->ncbiBlastParametersMatrix != NULL && obj->ncbiBlastParametersMatrix->next != NULL) xapError(xp, "Multiple Parameters_matrix"); if (obj->ncbiBlastParametersExpect == NULL) xapError(xp, "Missing Parameters_expect"); if (obj->ncbiBlastParametersExpect->next != NULL) xapError(xp, "Multiple Parameters_expect"); if (obj->ncbiBlastParametersInclude != NULL && obj->ncbiBlastParametersInclude->next != NULL) xapError(xp, "Multiple Parameters_include"); if (obj->ncbiBlastParametersScMatch != NULL && obj->ncbiBlastParametersScMatch->next != NULL) xapError(xp, "Multiple Parameters_sc-match"); if (obj->ncbiBlastParametersScMismatch != NULL && obj->ncbiBlastParametersScMismatch->next != NULL) xapError(xp, "Multiple Parameters_sc-mismatch"); if (obj->ncbiBlastParametersGapOpen == NULL) xapError(xp, "Missing Parameters_gap-open"); if (obj->ncbiBlastParametersGapOpen->next != NULL) xapError(xp, "Multiple Parameters_gap-open"); if (obj->ncbiBlastParametersGapExtend == NULL) xapError(xp, "Missing Parameters_gap-extend"); if (obj->ncbiBlastParametersGapExtend->next != NULL) xapError(xp, "Multiple Parameters_gap-extend"); if (obj->ncbiBlastParametersFilter != NULL && obj->ncbiBlastParametersFilter->next != NULL) xapError(xp, "Multiple Parameters_filter"); if (obj->ncbiBlastParametersPattern != NULL && obj->ncbiBlastParametersPattern->next != NULL) xapError(xp, "Multiple Parameters_pattern"); if (obj->ncbiBlastParametersEntrezQuery != NULL && obj->ncbiBlastParametersEntrezQuery->next != NULL) xapError(xp, "Multiple Parameters_entrez-query"); } else if (sameString(name, "Parameters_matrix")) { struct ncbiBlastParametersMatrix *obj = stack->object; obj->text = cloneString(stack->text->string); } else if (sameString(name, "Parameters_expect")) { struct ncbiBlastParametersExpect *obj = stack->object; obj->text = sqlDouble(stack->text->string); } else if (sameString(name, "Parameters_include")) { struct ncbiBlastParametersInclude *obj = stack->object; obj->text = sqlDouble(stack->text->string); } else if (sameString(name, "Parameters_sc-match")) { struct ncbiBlastParametersScMatch *obj = stack->object; obj->text = sqlSigned(stack->text->string); } else if (sameString(name, "Parameters_sc-mismatch")) { struct ncbiBlastParametersScMismatch *obj = stack->object; obj->text = sqlSigned(stack->text->string); } else if (sameString(name, "Parameters_gap-open")) { struct ncbiBlastParametersGapOpen *obj = stack->object; obj->text = sqlSigned(stack->text->string); } else if (sameString(name, "Parameters_gap-extend")) { struct ncbiBlastParametersGapExtend *obj = stack->object; obj->text = sqlSigned(stack->text->string); } else if (sameString(name, "Parameters_filter")) { struct ncbiBlastParametersFilter *obj = stack->object; obj->text = cloneString(stack->text->string); } else if (sameString(name, "Parameters_pattern")) { struct ncbiBlastParametersPattern *obj = stack->object; obj->text = cloneString(stack->text->string); } else if (sameString(name, "Parameters_entrez-query")) { struct ncbiBlastParametersEntrezQuery *obj = stack->object; obj->text = cloneString(stack->text->string); } else if (sameString(name, "Statistics")) { struct ncbiBlastStatistics *obj = stack->object; if (obj->ncbiBlastStatisticsDbNum == NULL) xapError(xp, "Missing Statistics_db-num"); if (obj->ncbiBlastStatisticsDbNum->next != NULL) xapError(xp, "Multiple Statistics_db-num"); if (obj->ncbiBlastStatisticsDbLen == NULL) xapError(xp, "Missing Statistics_db-len"); if (obj->ncbiBlastStatisticsDbLen->next != NULL) xapError(xp, "Multiple Statistics_db-len"); if (obj->ncbiBlastStatisticsHspLen == NULL) xapError(xp, "Missing Statistics_hsp-len"); if (obj->ncbiBlastStatisticsHspLen->next != NULL) xapError(xp, "Multiple Statistics_hsp-len"); if (obj->ncbiBlastStatisticsEffSpace == NULL) xapError(xp, "Missing Statistics_eff-space"); if (obj->ncbiBlastStatisticsEffSpace->next != NULL) xapError(xp, "Multiple Statistics_eff-space"); if (obj->ncbiBlastStatisticsKappa == NULL) xapError(xp, "Missing Statistics_kappa"); if (obj->ncbiBlastStatisticsKappa->next != NULL) xapError(xp, "Multiple Statistics_kappa"); if (obj->ncbiBlastStatisticsLambda == NULL) xapError(xp, "Missing Statistics_lambda"); if (obj->ncbiBlastStatisticsLambda->next != NULL) xapError(xp, "Multiple Statistics_lambda"); if (obj->ncbiBlastStatisticsEntropy == NULL) xapError(xp, "Missing Statistics_entropy"); if (obj->ncbiBlastStatisticsEntropy->next != NULL) xapError(xp, "Multiple Statistics_entropy"); } else if (sameString(name, "Statistics_db-num")) { struct ncbiBlastStatisticsDbNum *obj = stack->object; obj->text = sqlSigned(stack->text->string); } else if (sameString(name, "Statistics_db-len")) { struct ncbiBlastStatisticsDbLen *obj = stack->object; obj->text = sqlSigned(stack->text->string); } else if (sameString(name, "Statistics_hsp-len")) { struct ncbiBlastStatisticsHspLen *obj = stack->object; obj->text = sqlSigned(stack->text->string); } else if (sameString(name, "Statistics_eff-space")) { struct ncbiBlastStatisticsEffSpace *obj = stack->object; obj->text = sqlDouble(stack->text->string); } else if (sameString(name, "Statistics_kappa")) { struct ncbiBlastStatisticsKappa *obj = stack->object; obj->text = sqlDouble(stack->text->string); } else if (sameString(name, "Statistics_lambda")) { struct ncbiBlastStatisticsLambda *obj = stack->object; obj->text = sqlDouble(stack->text->string); } else if (sameString(name, "Statistics_entropy")) { struct ncbiBlastStatisticsEntropy *obj = stack->object; obj->text = sqlDouble(stack->text->string); } else if (sameString(name, "Hit")) { struct ncbiBlastHit *obj = stack->object; if (obj->ncbiBlastHitNum == NULL) xapError(xp, "Missing Hit_num"); if (obj->ncbiBlastHitNum->next != NULL) xapError(xp, "Multiple Hit_num"); if (obj->ncbiBlastHitId == NULL) xapError(xp, "Missing Hit_id"); if (obj->ncbiBlastHitId->next != NULL) xapError(xp, "Multiple Hit_id"); if (obj->ncbiBlastHitDef == NULL) xapError(xp, "Missing Hit_def"); if (obj->ncbiBlastHitDef->next != NULL) xapError(xp, "Multiple Hit_def"); if (obj->ncbiBlastHitAccession == NULL) xapError(xp, "Missing Hit_accession"); if (obj->ncbiBlastHitAccession->next != NULL) xapError(xp, "Multiple Hit_accession"); if (obj->ncbiBlastHitLen == NULL) xapError(xp, "Missing Hit_len"); if (obj->ncbiBlastHitLen->next != NULL) xapError(xp, "Multiple Hit_len"); if (obj->ncbiBlastHitHsps != NULL && obj->ncbiBlastHitHsps->next != NULL) xapError(xp, "Multiple Hit_hsps"); } else if (sameString(name, "Hit_num")) { struct ncbiBlastHitNum *obj = stack->object; obj->text = sqlSigned(stack->text->string); } else if (sameString(name, "Hit_id")) { struct ncbiBlastHitId *obj = stack->object; obj->text = cloneString(stack->text->string); } else if (sameString(name, "Hit_def")) { struct ncbiBlastHitDef *obj = stack->object; obj->text = cloneString(stack->text->string); } else if (sameString(name, "Hit_accession")) { struct ncbiBlastHitAccession *obj = stack->object; obj->text = cloneString(stack->text->string); } else if (sameString(name, "Hit_len")) { struct ncbiBlastHitLen *obj = stack->object; obj->text = sqlSigned(stack->text->string); } else if (sameString(name, "Hit_hsps")) { struct ncbiBlastHitHsps *obj = stack->object; slReverse(&obj->ncbiBlastHsp); } else if (sameString(name, "Hsp")) { struct ncbiBlastHsp *obj = stack->object; if (obj->ncbiBlastHspNum == NULL) xapError(xp, "Missing Hsp_num"); if (obj->ncbiBlastHspNum->next != NULL) xapError(xp, "Multiple Hsp_num"); if (obj->ncbiBlastHspBitScore == NULL) xapError(xp, "Missing Hsp_bit-score"); if (obj->ncbiBlastHspBitScore->next != NULL) xapError(xp, "Multiple Hsp_bit-score"); if (obj->ncbiBlastHspScore == NULL) xapError(xp, "Missing Hsp_score"); if (obj->ncbiBlastHspScore->next != NULL) xapError(xp, "Multiple Hsp_score"); if (obj->ncbiBlastHspEvalue == NULL) xapError(xp, "Missing Hsp_evalue"); if (obj->ncbiBlastHspEvalue->next != NULL) xapError(xp, "Multiple Hsp_evalue"); if (obj->ncbiBlastHspQueryFrom == NULL) xapError(xp, "Missing Hsp_query-from"); if (obj->ncbiBlastHspQueryFrom->next != NULL) xapError(xp, "Multiple Hsp_query-from"); if (obj->ncbiBlastHspQueryTo == NULL) xapError(xp, "Missing Hsp_query-to"); if (obj->ncbiBlastHspQueryTo->next != NULL) xapError(xp, "Multiple Hsp_query-to"); if (obj->ncbiBlastHspHitFrom == NULL) xapError(xp, "Missing Hsp_hit-from"); if (obj->ncbiBlastHspHitFrom->next != NULL) xapError(xp, "Multiple Hsp_hit-from"); if (obj->ncbiBlastHspHitTo == NULL) xapError(xp, "Missing Hsp_hit-to"); if (obj->ncbiBlastHspHitTo->next != NULL) xapError(xp, "Multiple Hsp_hit-to"); if (obj->ncbiBlastHspPatternFrom != NULL && obj->ncbiBlastHspPatternFrom->next != NULL) xapError(xp, "Multiple Hsp_pattern-from"); if (obj->ncbiBlastHspPatternTo != NULL && obj->ncbiBlastHspPatternTo->next != NULL) xapError(xp, "Multiple Hsp_pattern-to"); if (obj->ncbiBlastHspQueryFrame != NULL && obj->ncbiBlastHspQueryFrame->next != NULL) xapError(xp, "Multiple Hsp_query-frame"); if (obj->ncbiBlastHspHitFrame != NULL && obj->ncbiBlastHspHitFrame->next != NULL) xapError(xp, "Multiple Hsp_hit-frame"); if (obj->ncbiBlastHspIdentity != NULL && obj->ncbiBlastHspIdentity->next != NULL) xapError(xp, "Multiple Hsp_identity"); if (obj->ncbiBlastHspPositive != NULL && obj->ncbiBlastHspPositive->next != NULL) xapError(xp, "Multiple Hsp_positive"); if (obj->ncbiBlastHspGaps != NULL && obj->ncbiBlastHspGaps->next != NULL) xapError(xp, "Multiple Hsp_gaps"); if (obj->ncbiBlastHspAlignLen != NULL && obj->ncbiBlastHspAlignLen->next != NULL) xapError(xp, "Multiple Hsp_align-len"); if (obj->ncbiBlastHspDensity != NULL && obj->ncbiBlastHspDensity->next != NULL) xapError(xp, "Multiple Hsp_density"); if (obj->ncbiBlastHspQseq == NULL) xapError(xp, "Missing Hsp_qseq"); if (obj->ncbiBlastHspQseq->next != NULL) xapError(xp, "Multiple Hsp_qseq"); if (obj->ncbiBlastHspHseq == NULL) xapError(xp, "Missing Hsp_hseq"); if (obj->ncbiBlastHspHseq->next != NULL) xapError(xp, "Multiple Hsp_hseq"); if (obj->ncbiBlastHspMidline != NULL && obj->ncbiBlastHspMidline->next != NULL) xapError(xp, "Multiple Hsp_midline"); } else if (sameString(name, "Hsp_num")) { struct ncbiBlastHspNum *obj = stack->object; obj->text = sqlSigned(stack->text->string); } else if (sameString(name, "Hsp_bit-score")) { struct ncbiBlastHspBitScore *obj = stack->object; obj->text = sqlDouble(stack->text->string); } else if (sameString(name, "Hsp_score")) { struct ncbiBlastHspScore *obj = stack->object; obj->text = sqlDouble(stack->text->string); } else if (sameString(name, "Hsp_evalue")) { struct ncbiBlastHspEvalue *obj = stack->object; obj->text = sqlDouble(stack->text->string); } else if (sameString(name, "Hsp_query-from")) { struct ncbiBlastHspQueryFrom *obj = stack->object; obj->text = sqlSigned(stack->text->string); } else if (sameString(name, "Hsp_query-to")) { struct ncbiBlastHspQueryTo *obj = stack->object; obj->text = sqlSigned(stack->text->string); } else if (sameString(name, "Hsp_hit-from")) { struct ncbiBlastHspHitFrom *obj = stack->object; obj->text = sqlSigned(stack->text->string); } else if (sameString(name, "Hsp_hit-to")) { struct ncbiBlastHspHitTo *obj = stack->object; obj->text = sqlSigned(stack->text->string); } else if (sameString(name, "Hsp_pattern-from")) { struct ncbiBlastHspPatternFrom *obj = stack->object; obj->text = sqlSigned(stack->text->string); } else if (sameString(name, "Hsp_pattern-to")) { struct ncbiBlastHspPatternTo *obj = stack->object; obj->text = sqlSigned(stack->text->string); } else if (sameString(name, "Hsp_query-frame")) { struct ncbiBlastHspQueryFrame *obj = stack->object; obj->text = sqlSigned(stack->text->string); } else if (sameString(name, "Hsp_hit-frame")) { struct ncbiBlastHspHitFrame *obj = stack->object; obj->text = sqlSigned(stack->text->string); } else if (sameString(name, "Hsp_identity")) { struct ncbiBlastHspIdentity *obj = stack->object; obj->text = sqlSigned(stack->text->string); } else if (sameString(name, "Hsp_positive")) { struct ncbiBlastHspPositive *obj = stack->object; obj->text = sqlSigned(stack->text->string); } else if (sameString(name, "Hsp_gaps")) { struct ncbiBlastHspGaps *obj = stack->object; obj->text = sqlSigned(stack->text->string); } else if (sameString(name, "Hsp_align-len")) { struct ncbiBlastHspAlignLen *obj = stack->object; obj->text = sqlSigned(stack->text->string); } else if (sameString(name, "Hsp_density")) { struct ncbiBlastHspDensity *obj = stack->object; obj->text = sqlSigned(stack->text->string); } else if (sameString(name, "Hsp_qseq")) { struct ncbiBlastHspQseq *obj = stack->object; obj->text = cloneString(stack->text->string); } else if (sameString(name, "Hsp_hseq")) { struct ncbiBlastHspHseq *obj = stack->object; obj->text = cloneString(stack->text->string); } else if (sameString(name, "Hsp_midline")) { struct ncbiBlastHspMidline *obj = stack->object; obj->text = cloneString(stack->text->string); } }